Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401161.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4313.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2922
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.32

Warning! 253 characters in sequence are not A, C, G, or T


Found at i:1267 original size:170 final size:160

Alignment explanation


    Indices: 1067--1706  Score: 475
    Period size: 170  Copynumber: 3.8  Consensus size: 160

       1057 NNNNNNNNNN

                        *       *                        *        *          
       1067 AAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTCCATATAAATGGGTTTTTCTACA
          1 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTCCAAATAAATGGATTTTTCTACA

                  **      **                                                 
       1132 TGTTTCTTAAGGCACACATT-AATTTACAGTCTGTTTTAATGAAAAATGTAAAAAATTCAACTTA
         66 TGTTTCCCAAGGCAGGCATTCAATTTA-AGTCTGTTTTAATGAAAAATGTAAAAAATTCAACTTA

                                           *  *      
       1196 AAATCNNNNNNNNNNTTATAAAACCATTTAACGCGAGTAAT
        130 AAATC----------TTATAAAACCATTTAAAGCAAGTAAT

                              *    *          *         *    *     *         
       1237 AAGGCTTTTGAAGGAATGAGAGAGTATAAATGGAATTTT-TCTCTAAATGAATGGCTTTTT-TAC
          1 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCT-TCCAAATAAATGGATTTTTCTAC

             *                                 *     **                      
       1300 ACGTTTCCCAAGGCAGGCATTCAATTATAA-TCTGCTTTAACAAAAAATGTAAAAAAGTTCAACT
         65 ATGTTTCCCAAGGCAGGCATTCAATT-TAAGTCTGTTTTAATGAAAAATGTAAAAAA-TTCAACT

                                                       
       1364 TAAAATCNNNNNNNNNNTTATAAAACCATTTAAAGCAAGTAAT
        128 TAAAATC----------TTATAAAACCATTTAAAGCAAGTAAT

                 *   *                 *                           *       * 
       1407 AAGGCGTTTAAAGGAATGGGAGACTATCAATGGACTTTTCTTCCAAATAAATGGACTTTTCTATA
          1 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTCCAAATAAATGGATTTTTCTACA

                      *                    *                *   *            
       1472 TGTTTCCCAAAGCAGGCATTCAA-TTATAGTTTGTTTTAATGAAAAATATAACAAATTCAACTTA
         66 TGTTTCCCAAGGCAGGCATTCAATTTA-AGTCTGTTTTAATGAAAAATGTAAAAAATTCAACTTA

                              **             **      
       1536 AAATCAATTANNNNNNNNNNAAACCATTTAAAGTGAGTAAT
        130 AAATC--TTA--------TAAAACCATTTAAAGCAAGTAAT

                       *        * *                          *   ***  *    * 
       1577 AAGGCTTTTGATGGAATGGGTGCCTATAAATGGACTTTTCTTCTC-AATGAATTTCTTGTTCTCC
          1 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTC-CAAATAAATGGATTTTTCTAC

                         *  *                    *                      *    
       1641 ATGTTTCCCAAGGTAGACATTCAATTATAA-TCTGTTATAATGAAAAATGTAAAAAAATTGAACT
         65 ATGTTTCCCAAGGCAGGCATTCAATT-TAAGTCTGTTTTAATGAAAAATGT-AAAAAATTCAACT

              
       1705 TA
        128 TA

       1707 CAATTAATTT


Statistics
Matches: 384,  Mismatches: 66, Indels: 39
        0.79            0.13        0.08

Matches are distributed among these distances:
 162    3  0.01
 169   45  0.12
 170  271  0.71
 171   63  0.16
 172    2  0.01

ACGTcount: A:0.36, C:0.13, G:0.14, T:0.33


Consensus pattern (160 bp):   
AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTCCAAATAAATGGATTTTTCTACA
TGTTTCCCAAGGCAGGCATTCAATTTAAGTCTGTTTTAATGAAAAATGTAAAAAATTCAACTTAA
AATCTTATAAAACCATTTAAAGCAAGTAAT
Done.