Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401162.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4313.1, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2346
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.34

Warning! 116 characters in sequence are not A, C, G, or T


Found at i:1959 original size:171 final size:166

Alignment explanation


    Indices: 1698--2171  Score: 441
    Period size: 171  Copynumber: 2.8  Consensus size: 166

       1688 TGATGGAATG

                  *                 *      *   * *     *    *      *         
       1698 GGTGACCATAAATAGACTTTTCCTGC-CAATGAATGCTTTTTTCTTCATGTTTCTTAAGGTAGAC
          1 GGTGACTATAAATAGACTTTT-CTTCTCAATAAATACATTTTTATTCACGTTTCTAAAGGTAGAC

              *         *                                                    
       1762 ATGCAATTATAGATTGTTTTAACCAAAAATGTGAAAAAATTCAACTTAAAATCAATTATGAGATT
         65 ATTCAATTATAGGTTGTTTTAACCAAAAATGTGAAAAAATTCAACTTAAAATCAATTATGAGATT

                   ***********                        
       1827 ATNNNNNNNNNNNNNNNNAGTAATAATGCTTTTGAAAGTATA
        130 AT-----TATTTAAAGCGAGTAATAATGCTTTTGAAAGTATA

                         *                     *                  *          
       1869 GGTGACTATAAATGGACTTTTCTTCTCAATAAATAGATTTTTATTCACGTTTCTGAAGGTAGACA
          1 GGTGACTATAAATAGACTTTTCTTCTCAATAAATACATTTTTATTCACGTTTCTAAAGGTAGACA

                                                *   *                        
       1934 TTCAATTATAGGTTGTTTTAACCAAAAATGTGAAAACATTTAACTTAAAATCAATTATGAGNNNN
         66 TTCAATTATAGGTTGTTTTAACCAAAAATGTGAAAAAATTCAACTTAAAATCAATTATGAG----

             *****                                   
       1999 NNNNNNTATTTAAAGCGAGTAATAATGCTTTTGAAAGTATA
        127 -ATTATTATTTAAAGCGAGTAATAATGCTTTTGAAAGTATA

                                                                       *     
       2040 GGTGACTATAAATAGACTTTTCTTCTCAATAAATACATTTTTATTCACGTTTCTAAAGGAACG-C
          1 GGTGACTATAAATAGACTTTTCTTCTCAATAAATACATTTTTATTCACGTTTCTAAAGGTA-GAC

                            *      **  *    **            *       *          
       2104 ATTCAATTATA-GTCTTTTTTAATGAAGAATGCAAAAAGAATTCAAGTTAAAATGAATTATGAGA
         65 ATTCAATTATAGGT-TGTTTTAACCAAAAATGTGAAAA-AATTCAACTTAAAATCAATTATGAGA

                
       2168 TTAT
        128 TTAT

       2172 AAAACNNNNN


Statistics
Matches: 245,  Mismatches: 49, Indels: 22
        0.78            0.16        0.07

Matches are distributed among these distances:
 170    5  0.02
 171  218  0.89
 172   22  0.09

ACGTcount: A:0.35, C:0.11, G:0.13, T:0.35


Consensus pattern (166 bp):   
GGTGACTATAAATAGACTTTTCTTCTCAATAAATACATTTTTATTCACGTTTCTAAAGGTAGACA
TTCAATTATAGGTTGTTTTAACCAAAAATGTGAAAAAATTCAACTTAAAATCAATTATGAGATTA
TTATTTAAAGCGAGTAATAATGCTTTTGAAAGTATA
Done.