Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401166.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4317.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1186
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.32

Warning! 197 characters in sequence are not A, C, G, or T


Found at i:780 original size:171 final size:170

Alignment explanation


    Indices: 226--825  Score: 507
    Period size: 171  Copynumber: 3.5  Consensus size: 170

        216 NNNNNNNNNN

                 *        *    *                               *   *         
        226 ATTGAGAAGAAAAGCCTATCTATAGTCACCATTCTTTCAAAAGCCTTATTAGTCGATTTAAATGG
          1 ATTGACAAGAAAAGTCTATTTATAGTCACCATTCTTTCAAAAGCCTTATTACTCGCTTTAAATGG

                                             *                          **   
        291 TTTTATAATCTCATAATTGATTTTG-AGTTGAAGTTTTTTACACTTTTGGTTGC-AACAGGTTAT
         66 TTTTATAATCTCATAATTGA-TTTGAAGTTGAACTTTTTTACACTTTTGGTT-CAAACAGACTAT

                   *         * *    *              **    
        354 AATTGAAAGTCTGT-CTTAGGAAACATG-G-AGAAAAAGCCATTC
        129 AATTGAATGT-T-TAC-CATGAAAAATGTGAAGAAAAAGATATTC

            *    *          *                                      *      ***
        396 TTTGAAAAGAAAAGTCCATTTATAGTCACGCATTCTTTCAAAAGCCTTATTACTCACTTTAANNN
          1 ATTGACAAGAAAAGTCTATTTATAGTCAC-CATTCTTTCAAAAGCCTTATTACTCGCTTTAAATG

            ******* *     *         *     *       *    *        *   *   *    
        461 NNNNNNNAGTCTCAAAATTGATTTTAAGTTAAACTTTTCTACATTTTTGGTTAAAATAGAGTATA
         65 GTTTTATAATCTCATAATTGATTTGAAGTTGAACTTTTTTACACTTTTGGTTCAAACAGACTATA

                    **      *                         
        526 ATTGAATGCCTACC-TCAAGAAATGTGAAGAAAAAGATATTC
        130 ATTGAATGTTTACCATGAA-AAATGTGAAGAAAAAGATATTC

                                       ********                              
        567 ATTGACAAGAAAAGTCTATTTATAGNNNNNNNNNNC-TTCAAAAGCCTTATTACTCGCTTTAAAT
          1 ATTGACAAGAAAAGTCTATTTATAG--TCACCATTCTTTCAAAAGCCTTATTACTCGCTTTAAAT

              *         *                     *       *                      
        631 GGGTTTATAATCCCATAATTGATTTGAAGTTGAATTTTTTTATACTTTTGGTTCAAACAGACTAT
         64 GGTTTTATAATCTCATAATTGATTTGAAGTTGAACTTTTTTACACTTTTGGTTCAAACAGACTAT

                                                       
        696 AATTGAATGTTTACCATGAAAAATGTGAAGAAAAA-AGTATTC
        129 AATTGAATGTTTACCATGAAAAATGTGAAGAAAAAGA-TATTC

                * *                    *      *                              
        738 ATTGGCTAGAAAAGTCTATTTATAGTCTCCTATTATTTCAAAAGCCTTATTACT-GACTTTAAAT
          1 ATTGACAAGAAAAGTCTATTTATAGTCACC-ATTCTTTCAAAAGCCTTATTACTCG-CTTTAAAT

             *           *          
        802 GCTTTTATAATCTTATAATTGATT
         64 GGTTTTATAATCTCATAATTGATT

        826 CNNNNNNNNN


Statistics
Matches: 326,  Mismatches: 90, Indels: 27
        0.74            0.20        0.06

Matches are distributed among these distances:
 168    2  0.01
 169    5  0.02
 170   31  0.10
 171  284  0.87
 172    4  0.01

ACGTcount: A:0.34, C:0.13, G:0.14, T:0.36


Consensus pattern (170 bp):   
ATTGACAAGAAAAGTCTATTTATAGTCACCATTCTTTCAAAAGCCTTATTACTCGCTTTAAATGG
TTTTATAATCTCATAATTGATTTGAAGTTGAACTTTTTTACACTTTTGGTTCAAACAGACTATAA
TTGAATGTTTACCATGAAAAATGTGAAGAAAAAGATATTC
Done.