Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401169.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4320.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1471
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.26

Warning! 383 characters in sequence are not A, C, G, or T


Found at i:379 original size:171 final size:170

Alignment explanation


    Indices: 1--385  Score: 404
    Period size: 171  Copynumber: 2.2  Consensus size: 170

                                 *             **               **  *        
          1 CATTCATTGGCAAGAAAAGTCCATTTATAGTCACCGTTTCCTGCAAAAGCCTTTTTGCTCACTTT
          1 CATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCCT-CAAAAGCCTCATTACTCACTTT

               *             *              *                     *         *
         66 ATTTTGTTTTATAATCTTAAAATTGATTTGAATTTGAATTCTTTATACATTTTTTGTTAAAACAT
         65 A-TATGTTTTATAATCTCAAAATTGATTTGAAGTTGAATTCTTTATACATTTTTGGTTAAAACAG

             *       * *                   *          
        131 ATTATAATTGAGTGTCAACTTCAAGAAACATGAAGAAAAAGA
        129 ACTATAATTCACTGTCAACTTCAAGAAACATAAAGAAAAAGA

               *      *       *                                              
        173 CATACATTGGGAAGAAAAATCTATTTATAGTCACCCATTCCGTCAAAAGCCTCATTACTCACTTT
          1 CATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCC-TCAAAAGCCTCATTACTCACTTT

                                 *         *                  *          *   
        238 CA-ATGCTTTTATAATGC-CATAATTGATTTTAAGTTGAAATT-TTT-TATATTTTTGGTTGAAA
         65 -ATATG-TTTTATAAT-CTCAAAATTGATTTGAAGTTG-AATTCTTTATACATTTTTGGTTAAAA

            *                         *                   *
        299 TAGACTATAATTCACTGTCAA-TCTCTAGAAAC-TCAAAGAAAAAGG
        126 CAGACTATAATTCACTGTCAACT-TCAAGAAACAT-AAAGAAAAAGA

            *                   *                     
        344 TATTCATTGGCAAGAAAAGTATATTTATAGTCACCCATTCCT
          1 CATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCCT

        386 TCAANNNNNN


Statistics
Matches: 176,  Mismatches: 30, Indels: 16
        0.79            0.14        0.07

Matches are distributed among these distances:
 170    3  0.02
 171   85  0.48
 172   81  0.46
 173    7  0.04

ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37


Consensus pattern (170 bp):   
CATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCATTCCTCAAAAGCCTCATTACTCACTTTA
TATGTTTTATAATCTCAAAATTGATTTGAAGTTGAATTCTTTATACATTTTTGGTTAAAACAGAC
TATAATTCACTGTCAACTTCAAGAAACATAAAGAAAAAGA
Done.