Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401171.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4322.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1165
ACGTcount: A:0.23, C:0.07, G:0.10, T:0.23

Warning! 431 characters in sequence are not A, C, G, or T


Found at i:419 original size:171 final size:159

Alignment explanation


    Indices: 209--525  Score: 300
    Period size: 171  Copynumber: 1.9  Consensus size: 159

        199 AAAGTGGGTA

                                                              *              
        209 ATAAGACTTGTGAAGGAATCAGTGAATATAAAGGGACTTTTCTTC-CTAACGAATACGTTTTTCT
          1 ATAAGACTTGTGAAGGAATCAGTGAATATAAAGGGACTTTTCTTCTC-AAAGAATA-GTTTTT-T

                             *       *                                       
        273 TTACA-TTTCTCAAAG-TAGACATTTAATTATAGTCTGTTTTAATCAAAAATGTAAAA-AAGTTC
         63 TTACACTTTCT-AAAGACAGACATTCAATTATAGTCTGTTTTAATCAAAAATGTAAAATAA-TTC

                 *    *                       
        335 AACTTTAAATTAATTATGAGATTATAAAGCCATT
        126 AACTTAAAATCAATTATGAGATTATAAAGCCATT

                            *   *         *     * *    *        *            
        369 NNNNNNNNNNNATAAGGCTTTTGAAGGAATGAGTGACTCTAAATGGACTTTTGTTCTCAAAGAAT
          1 -----------ATAAGACTTGTGAAGGAATCAGTGAATATAAAGGGACTTTTCTTCTCAAAGAAT

                                **      *                        *           
        434 AGTTTTTTTTACACGTTTCTTGAGACAGGCATTCAATTATAGTCTGTTTTAATGAAAAATGTAAA
         55 AGTTTTTTTTACAC-TTTCTAAAGACAGACATTCAATTATAGTCTGTTTTAATCAAAAATGTAAA

                     *                 
        499 ATAATTCAAGTTAAAATCAATTATGAG
        119 ATAATTCAACTTAAAATCAATTATGAG

        526 TTTANNNNNN


Statistics
Matches: 124,  Mismatches: 17, Indels: 10
        0.82            0.11        0.07

Matches are distributed among these distances:
 169    6  0.05
 170    8  0.06
 171  107  0.86
 172    3  0.02

ACGTcount: A:0.36, C:0.11, G:0.15, T:0.36


Consensus pattern (159 bp):   
ATAAGACTTGTGAAGGAATCAGTGAATATAAAGGGACTTTTCTTCTCAAAGAATAGTTTTTTTTA
CACTTTCTAAAGACAGACATTCAATTATAGTCTGTTTTAATCAAAAATGTAAAATAATTCAACTT
AAAATCAATTATGAGATTATAAAGCCATT
Done.