Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401173.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4324.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2495
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.24

Warning! 956 characters in sequence are not A, C, G, or T


Found at i:1234 original size:171 final size:162

Alignment explanation


    Indices: 1040--1374  Score: 311
    Period size: 171  Copynumber: 2.0  Consensus size: 162

       1030 TTAAATGGTC

                     *      *               *      *       *         **      
       1040 TTATAATCTTAAAATTGATTTTAAGTACAATTTTTTTTATATTTTTGGTTAAAAAAGGTTATAAT
          1 TTATAATCTCAAAATTAATTTTAAGTACAATTATTTTTACATTTTTGATTAAAAAAGCCTATAAT

                   * *       *                    *                          
       1105 TGAATGTTTGCCTT-AGGAAACAT-ACA-AAAAAACTATTCATTAAG-AAGAAAAGTCC-ATTTA
         66 TGAATGTCTACCTTGA-AAAACATGA-AGAAAAAACTACTCATT-AGTAAGAAAAG-CCTATTTA

                  *      *                      
       1165 TAGTCAGTCATTCTTTCAAAAGCCTTATTACTCACT
        127 TAGTCACTCATTCCTTCAAAAGCCTTATTACTCACT

                                 *              **                          *
       1201 TTNNNNNNNNNNATAATCTCATAATTAATTTTAAGTTTAATTATTTTTACATTTTTGATTAAAAC
          1 TT----------ATAATCTCAAAATTAATTTTAAGTACAATTATTTTTACATTTTTGATTAAAAA

             *                  *                     **        *            
       1266 ATCCTATAATTGAATGTCTATCTTGAAAAACATGAAGAAAAAGGTACTCATTGGTAAGAAAAGCC
         56 AGCCTATAATTGAATGTCTACCTTGAAAAACATGAAGAAAAAACTACTCATTAGTAAGAAAAGCC

                                                      
       1331 TATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCACT
        121 TATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCACT

              
       1373 TT
          1 TT

       1375 NNNNNNNNNN


Statistics
Matches: 137,  Mismatches: 22, Indels: 19
        0.77            0.12        0.11

Matches are distributed among these distances:
 161    2  0.01
 171   72  0.53
 172   63  0.46

ACGTcount: A:0.36, C:0.13, G:0.10, T:0.39


Consensus pattern (162 bp):   
TTATAATCTCAAAATTAATTTTAAGTACAATTATTTTTACATTTTTGATTAAAAAAGCCTATAAT
TGAATGTCTACCTTGAAAAACATGAAGAAAAAACTACTCATTAGTAAGAAAAGCCTATTTATAGT
CACTCATTCCTTCAAAAGCCTTATTACTCACT
Done.