Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397646.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3755.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2713
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.39

Warning! 30 characters in sequence are not A, C, G, or T


Found at i:364 original size:199 final size:198

Alignment explanation


    Indices: 11--601  Score: 692
    Period size: 199  Copynumber: 3.0  Consensus size: 198

          1 GTTTCATTTC

                                             *                     *  *      
         11 TATTATTTGATCG-AGGTATAATGGTGCAAATTCGATATTTAAAGTACTTGACATTGCCTTCCTA
          1 TATTATTTGATCGAAGGTATAATGGTGCAAATTAGATATTTAAAGTACTTGACATAGCATTCCTA

               *   *   *   *                           *                     
         75 TTACT-TGATTGTGGAACAATGGTGCTCATAGAAATAAAAACAATTTAA-GTTATGGGCA-GTTG
         66 TT-GTGTAATTATGGCACAATGGTGCTCATAGAAATAAAAA-ACTTTAAGGTT-TGGGCATG-TG

                                 *                                           
        137 GCATTCCTATTATACATTACGGTATAATGGTGCTAATATGTGAATTTGAAATCTTAGTATATGGT
        127 GCATTCCTATTATACATTACGATATAATGGTGCTAATATGTGAATTTGAAATCTTAGTATATGGT

                  *
        202 GCATTCT
        192 GCATTCA

                 *                   * *                            *        
        209 TATTACTTGATCGAAGGTATAATGGAGTAAATTAGATATTTCAAA-TACTTGACATGGCATTCCT
          1 TATTATTTGATCGAAGGTATAATGGTGCAAATTAGATATTT-AAAGTACTTGACATAGCATTCCT

                             *               *                       *       
        273 ATTGTGTAATTATGGCATAATGGTGCTCATAGACATAAAGAAACTTTAAGGTTTGGGTATGTGGC
         65 ATTGTGTAATTATGGCACAATGGTGCTCATAGAAATAAA-AAACTTTAAGGTTTGGGCATGTGGC

                 *                         *     *              *  *      *  
        338 ATTCCGATTATACATTACGATATAATGGTGCCAATATATGAATTTGAAATCTAAGCATATGGCGC
        129 ATTCCTATTATACATTACGATATAATGGTGCTAATATGTGAATTTGAAATCTTAGTATATGGTGC

                 
        403 ATTCA
        194 ATTCA

            *          *      *                                   *       *  
        408 GATTATTTGATAGAA-GTTTAAATGGTGCAAATTAGATATTTAAAGTACTTGACCTAGCATTTCT
          1 TATTATTTGATCGAAGGTAT-AATGGTGCAAATTAGATATTTAAAGTACTTGACATAGCATTCCT

                  *   *                *   *                    ***         *
        472 ATTGTGCAATAATGGCACAATGGTGCTTATAAAAATAAAAAACCTTTAAGGTACAGGCATGTGGA
         65 ATTGTGTAATTATGGCACAATGGTGCTCATAGAAATAAAAAA-CTTTAAGGTTTGGGCATGTGGC

                        *    *   *            *                              
        537 ATTCCTATTATATATTATGATCTAATGGTG-TCATTATGTGAATTTGAAATCTTAGTATATGGTG
        129 ATTCCTATTATACATTACGATATAATGGTGCT-AATATGTGAATTTGAAATCTTAGTATATGGTG

             
        601 C
        193 C

        602 CTTCCCCTTG


Statistics
Matches: 331,  Mismatches: 52, Indels: 19
        0.82            0.13        0.05

Matches are distributed among these distances:
 198   22  0.07
 199  300  0.91
 200    9  0.03

ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36


Consensus pattern (198 bp):   
TATTATTTGATCGAAGGTATAATGGTGCAAATTAGATATTTAAAGTACTTGACATAGCATTCCTA
TTGTGTAATTATGGCACAATGGTGCTCATAGAAATAAAAAACTTTAAGGTTTGGGCATGTGGCAT
TCCTATTATACATTACGATATAATGGTGCTAATATGTGAATTTGAAATCTTAGTATATGGTGCAT
TCA
Done.