Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401189.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_434.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34983

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3453--3787
171
2.0
172
82
5
410
34
11
13
40
1.80
5543--6153
171
3.6
171
75
2
463
30
11
14
38
1.81
12611--12645
18
2.0
17
88
5
52
37
5
8
48
1.58
13614--14091
170
2.8
163
79
6
404
36
14
12
33
1.83
15235--15978
172
4.3
170
80
7
704
37
15
13
34
1.86
17239--17564
170
1.9
170
89
1
501
37
12
13
36
1.83
17754--18088
172
2.0
162
75
10
291
36
11
12
36
1.80
18045--18430
170
2.3
171
82
1
434
39
13
12
31
1.83
24674--25195
171
3.1
170
85
0
738
36
15
13
32
1.87
26882--27305
171
2.5
161
78
8
359
34
15
12
36
1.84
27731--30896
171
18.5
171
79
4
2786
37
13
14
34
1.85
27731--30896
343
9.3
341
79
4
2849
37
13
14
34
1.85
29543--29589
18
2.6
19
83
10
62
51
10
4
34
1.56
31473--31505
14
2.4
14
100
0
66
54
6
18
21
1.64
32809--33315
171
3.0
172
75
4
425
36
12
14
33
1.83
33482--34978
172
8.7
170
81
5
1399
37
12
13
35
1.84
33482--34978
171
8.7
170
81
5
1442
37
12
13
35
1.84

Tables:   1

The End!