Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401198.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4348.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2486
ACGTcount: A:0.25, C:0.10, G:0.09, T:0.26

Warning! 764 characters in sequence are not A, C, G, or T


Found at i:1868 original size:172 final size:170

Alignment explanation


    Indices: 1572--2048  Score: 511
    Period size: 172  Copynumber: 2.8  Consensus size: 170

       1562 NNNNNNNNNN

                *                                       *      *    *        
       1572 AAAAGGCATTCATTGGCAAGAAAAGTCATTTATAGTCACCCATTACTTCT-GAAGCATTATTACT
          1 AAAAAGCATTCATTGGCAAGAAAAGTCATTTATAGTCACCCATTCCTT-TAAAAGCCTTATTACT

                                                     *                       
       1636 CACTTTAAATGGTTTTATAATCTCAAAATTGATTCTAAGTTAAATTTTTT-TTACATTTTTGGTT
         65 CACTTTAAATGGTTTTATAATCTCAAAATTGATT-TAAGTTGAATTTTTTATT--ATTTTTGGTT

             **     *  *           *      **     *       
       1700 AGCACAAATTATAATTGAATGTCGT-CCTTGGGAAATGT-AA-AC
        127 AAAACAAACTAGAATTGAATGT-ATACCTTAAGAAATATGAAGAC

                                               *                   *    *    
       1742 AAAAAGCCATTCATTGGCAAGAAAAGTCAATTTATCGTCACCCATTCCTTTAAAACCCTTGTTAC
          1 AAAAAG-CATTCATTGGCAAGAAAAGTC-ATTTATAGTCACCCATTCCTTTAAAAGCCTTATTAC

                           * *                     *                         
       1807 TCACTTTAAATGGTTATGTAATCTCAAAATTGATTTAAATTTGAATTTTTCTATTATTTTTGGTT
         64 TCACTTTAAATGGTTTTATAATCTCAAAATTGATTT-AAGTTGAATTTTT-TATTATTTTTGGTT

                  *                                    *
       1872 AAAACAGACTAGAATTGAATGTATACCTTAAGAAATATGAAGAG
        127 AAAACAAACTAGAATTGAATGTATACCTTAAGAAATATGAAGAC

                                                       **   **        *      
       1916 AAAAA-CATTCATTGGCAAGAAAAGTCTATTTATAGTCACCCAGACCTACAAAAGCCTCATTACT
          1 AAAAAGCATTCATTGGCAAGAAAAGTC-ATTTATAGTCACCCATTCCTTTAAAAGCCTTATTACT

             **               *       *                                      
       1980 CGTTTTAAATGGTTTTATCATGC-CATAATTGATTTTAAGTTGAATTTTTT-TATATTTTTGGTT
         65 CACTTTAAATGGTTTTATAAT-CTCAAAATTGA-TTTAAGTTGAATTTTTTAT-TATTTTTGGTT

                  
       2043 AAAACA
        127 AAAACA

       2049 GACTNNNNNN


Statistics
Matches: 258,  Mismatches: 37, Indels: 23
        0.81            0.12        0.07

Matches are distributed among these distances:
 170    6  0.02
 171   42  0.16
 172  195  0.76
 173    7  0.03
 174    8  0.03

ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38


Consensus pattern (170 bp):   
AAAAAGCATTCATTGGCAAGAAAAGTCATTTATAGTCACCCATTCCTTTAAAAGCCTTATTACTC
ACTTTAAATGGTTTTATAATCTCAAAATTGATTTAAGTTGAATTTTTTATTATTTTTGGTTAAAA
CAAACTAGAATTGAATGTATACCTTAAGAAATATGAAGAC
Done.