Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401204.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4353.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3917
ACGTcount: A:0.18, C:0.05, G:0.06, T:0.17

Warning! 2156 characters in sequence are not A, C, G, or T


Found at i:1140 original size:15 final size:16

Alignment explanation


    Indices: 1120--1149  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1110 TTTAATCAAA

                            
       1120 AACTTAAAA-CAATTC
          1 AACTTAAAATCAATTC

                           
       1135 AACTTAAAATCAATT
          1 AACTTAAAATCAATT

       1150 ATGAGATTAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30


Consensus pattern (16 bp):   
AACTTAAAATCAATTC
Done.