Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018401207.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4355.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963
Length: 1606
ACGTcount: A:0.22, C:0.09, G:0.14, T:0.26
Warning! 463 characters in sequence are not A, C, G, or T
Found at i:142 original size:14 final size:14
Alignment explanation
Indices: 123--154 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
113 GATCAATCAG
123 TTGTGAATTGTTGT
1 TTGTGAATTGTTGT
137 TTGTGAATTGTTGT
1 TTGTGAATTGTTGT
151 TTGT
1 TTGT
155 TGNNNNNNNN
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.59
Consensus pattern (14 bp):
TTGTGAATTGTTGT
Found at i:146 original size:37 final size:37
Alignment explanation
Indices: 60--149 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 37
50 TGTGTAAATG
* *
60 TGTTTATGAATTCTTGGATCAATTAGTTGTGAATTGT
1 TGTTTATGAATTGTTGGATCAATCAGTTGTGAATTGT
*
97 TATTTATGAATTGTTGGATCAATCAGTTGTGAATTGT
1 TGTTTATGAATTGTTGGATCAATCAGTTGTGAATTGT
*
134 TGTTTGTGAATTGTTG
1 TGTTTATGAATTGTTG
150 TTTGTTGNNN
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.04, G:0.23, T:0.49
Consensus pattern (37 bp):
TGTTTATGAATTGTTGGATCAATCAGTTGTGAATTGT
Done.