Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401212.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_436.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5081
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.30

Warning! 738 characters in sequence are not A, C, G, or T


Found at i:2095 original size:28 final size:28

Alignment explanation


    Indices: 2064--2132  Score: 93
    Period size: 28  Copynumber: 2.4  Consensus size: 28

       2054 ATTTGAAATT

                                        
       2064 TTATTTATGTTTGATGTAATGTATTTGC
          1 TTATTTATGTTTGATGTAATGTATTTGC

                         *      *      *
       2092 TTATTTATGTTTGGTGTAATTTATTTGT
          1 TTATTTATGTTTGATGTAATGTATTTGC

              *          
       2120 TTGTTATATGTTT
          1 TTATT-TATGTTT

       2133 TTATTATTTA


Statistics
Matches: 36,  Mismatches: 4, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  28   29  0.81
  29    7  0.19

ACGTcount: A:0.19, C:0.01, G:0.17, T:0.62


Consensus pattern (28 bp):   
TTATTTATGTTTGATGTAATGTATTTGC
Done.