Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401223.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_437.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3756
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.20

Warning! 1610 characters in sequence are not A, C, G, or T


Found at i:1857 original size:21 final size:21

Alignment explanation


    Indices: 1828--1868  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1818 GAAGGGGTAA

                                 
       1828 CAATAAATGGACTTTTCTTCC
          1 CAATAAATGGACTTTTCTTCC

                *    * *        
       1849 CAATGAATGTATTTTTCTTC
          1 CAATAAATGGACTTTTCTTC

       1869 ACATTTCAAG


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.27, C:0.20, G:0.10, T:0.44


Consensus pattern (21 bp):   
CAATAAATGGACTTTTCTTCC
Done.