Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401235.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4381.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1141
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.18

Warning! 590 characters in sequence are not A, C, G, or T


Found at i:1097 original size:7 final size:8

Alignment explanation


    Indices: 1081--1112  Score: 55
    Period size: 8  Copynumber: 3.9  Consensus size: 8

       1071 AATCTGTTTT

                    
       1081 AATAAAAA
          1 AATAAAAA

                    
       1089 AATAAAAA
          1 AATAAAAA

                    
       1097 AATAAAAA
          1 AATAAAAA

                    
       1105 AATTAAAA
          1 AA-TAAAA

       1113 TTAAAATCAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   8   18  0.78
   9    5  0.22

ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16


Consensus pattern (8 bp):   
AATAAAAA

Done.