Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_95.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12062019
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 103452 characters in sequence are not A, C, G, or T
File 19 of 26
Found at i:7766160 original size:6 final size:6
Alignment explanation
Indices: 7766149--7766191 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
7766139 ATATTATATA
* *
7766149 TTTTAT TTTTAT TATAAT TTTATAT TTTATAT TTTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTT-TAT TTT-TAT TTTTAT TTTTA
7766192 ATATAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 20 0.62
7 12 0.38
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:7766171 original size:26 final size:26
Alignment explanation
Indices: 7766137--7766237 Score: 84
Period size: 26 Copynumber: 3.9 Consensus size: 26
7766127 AATATATTTT
7766137 TAATATTATATATTT-TATTTTTATTA
1 TAATATTATAT-TTTATATTTTTATTA
* *
7766163 TAATTTTATATTTTATATTTTTATTTT
1 TAATATTATATTTTATATTTTTA-TTA
* *
7766190 TAATATAAT-TTTTATA-TTATA-TA
1 TAATATTATATTTTATATTTTTATTA
* *
7766213 TATTATTATAATTTTTTTATTTTTA
1 TAATATTAT-A-TTTTATATTTTTA
7766238 AAACACAATA
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
23 8 0.14
25 7 0.12
26 31 0.53
27 13 0.22
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (26 bp):
TAATATTATATTTTATATTTTTATTA
Found at i:7766177 original size:7 final size:7
Alignment explanation
Indices: 7766129--7766189 Score: 52
Period size: 7 Copynumber: 8.1 Consensus size: 7
7766119 ATCGTTTAAA
7766129 TATATTTT
1 TATA-TTT
*
7766137 TAATATTA
1 T-ATATTT
7766145 TATATTT
1 TATATTT
*
7766152 TATTTTTAT
1 TA-TATT-T
7766161 TATAATTT
1 TAT-ATTT
7766169 TATATTT
1 TATATTT
7766176 TATATTT
1 TATATTT
7766183 T-TATTT
1 TATATTT
7766189 T
1 T
7766190 TAATATAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
6 6 0.13
7 19 0.42
8 12 0.27
9 8 0.18
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TATATTT
Found at i:7766185 original size:32 final size:33
Alignment explanation
Indices: 7766127--7766221 Score: 122
Period size: 32 Copynumber: 2.9 Consensus size: 33
7766117 TCATCGTTTA
* *
7766127 AATATATTTTTA-ATATTATATATTTTATTTTT
1 AATATAATTTTATATTTTATATATTTTATTTTT
*
7766159 ATTATAATTTTATATTTTATAT-TTTTATTTTT
1 AATATAATTTTATATTTTATATATTTTATTTTT
*
7766191 AATATAATTTTTATATTATATATATTATTAT
1 AATATAA-TTTTATATTTTATATATT-TTAT
7766222 AATTTTTTTA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
32 26 0.48
33 22 0.41
34 2 0.04
35 4 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (33 bp):
AATATAATTTTATATTTTATATATTTTATTTTT
Found at i:7766213 original size:18 final size:17
Alignment explanation
Indices: 7766128--7766222 Score: 78
Period size: 15 Copynumber: 5.8 Consensus size: 17
7766118 CATCGTTTAA
7766128 ATATATTTTTAATATTAT
1 ATATATTTTT-ATATTAT
7766146 ATAT-TTTATT-T-TTAT
1 ATATATTT-TTATATTAT
*
7766161 -TATAATTTTATATT-T
1 ATATATTTTTATATTAT
*
7766176 -TATATTTTTAT-TTTT
1 ATATATTTTTATATTAT
7766191 AATATAATTTTTATATTAT
1 -ATAT-ATTTTTATATTAT
*
7766210 ATATATTATTATA
1 ATATATTTTTATA
7766223 ATTTTTTTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
14 7 0.11
15 19 0.30
16 3 0.05
17 14 0.22
18 18 0.28
19 3 0.05
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
ATATATTTTTATATTAT
Found at i:7766332 original size:18 final size:18
Alignment explanation
Indices: 7766308--7766353 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
7766298 TTCAAAATCT
7766308 ATATAAAAAATTATAATA
1 ATATAAAAAATTATAATA
* * *
7766326 TTATAAAATATTTTAATA
1 ATATAAAAAATTATAATA
*
7766344 AAATAAAAAA
1 ATATAAAAAA
7766354 ATTAAAAAGT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
ATATAAAAAATTATAATA
Found at i:7766474 original size:13 final size:13
Alignment explanation
Indices: 7766456--7766510 Score: 67
Period size: 13 Copynumber: 4.2 Consensus size: 13
7766446 CTGTAATATA
7766456 ATTATATTATAAT
1 ATTATATTATAAT
7766469 ATTATATTATAAT
1 ATTATATTATAAT
*
7766482 AATT-TATTATAAA
1 -ATTATATTATAAT
*
7766495 ATAAATATTATAAT
1 AT-TATATTATAAT
7766509 AT
1 AT
7766511 AGTTTAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
12 2 0.06
13 21 0.58
14 13 0.36
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTATATTATAAT
Found at i:7768417 original size:2 final size:2
Alignment explanation
Indices: 7768410--7768453 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
7768400 TTTATTCATA
*
7768410 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7768452 AT
1 AT
7768454 GTGTGTGTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7768567 original size:2 final size:2
Alignment explanation
Indices: 7768560--7768586 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7768550 CTTTTTCTTG
7768560 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7768587 AAGGTATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7769236 original size:3 final size:3
Alignment explanation
Indices: 7769230--7769254 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7769220 AAAAATCCTA
7769230 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
7769255 AGTTTCTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:7770000 original size:2 final size:2
Alignment explanation
Indices: 7769993--7770023 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7769983 TTCTGGGGGA
*
7769993 AG AG AG AG AG AG AG GG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7770024 TGGGATTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7772476 original size:2 final size:2
Alignment explanation
Indices: 7772469--7772494 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7772459 GATTAGTTAC
7772469 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7772495 GTAGACTAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7772852 original size:2 final size:2
Alignment explanation
Indices: 7772845--7772871 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7772835 AGATGAAAAC
7772845 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7772872 CAAAGCTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7778152 original size:19 final size:19
Alignment explanation
Indices: 7778121--7778158 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7778111 AGTCTATTTC
*
7778121 TTCAGTTTTATTAATAAAA
1 TTCAGTTTTATTAAGAAAA
7778140 TTCA-TTTTGATTAAGAAAA
1 TTCAGTTTT-ATTAAGAAAA
7778159 AAAAGAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (19 bp):
TTCAGTTTTATTAAGAAAA
Found at i:7783724 original size:32 final size:32
Alignment explanation
Indices: 7783683--7783747 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
7783673 TTGTAAATAT
7783683 TCACTATAGAGATAACAATGGGTACCCTATAA
1 TCACTATAGAGATAACAATGGGTACCCTATAA
7783715 TCACTATAGAGATAACAATGGGTACCCTATAA
1 TCACTATAGAGATAACAATGGGTACCCTATAA
7783747 T
1 T
7783748 AGGGTACCCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.26
Consensus pattern (32 bp):
TCACTATAGAGATAACAATGGGTACCCTATAA
Found at i:7795487 original size:36 final size:36
Alignment explanation
Indices: 7795440--7795509 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
7795430 AAATTTATGC
*
7795440 TTGATCCTAGTAAAAGGCATATTGTGAAGGTTACGT
1 TTGATCCTAGTAAAAGGCATATTGTAAAGGTTACGT
* * *
7795476 TTGATCTTAGTAAAAGGTATGTTGTAAAGGTTAC
1 TTGATCCTAGTAAAAGGCATATTGTAAAGGTTAC
7795510 ACCTAATCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (36 bp):
TTGATCCTAGTAAAAGGCATATTGTAAAGGTTACGT
Found at i:7796169 original size:17 final size:17
Alignment explanation
Indices: 7796147--7796179 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7796137 GAAGATTTTT
7796147 TTTGCAATAAAC-CATGC
1 TTTGCAA-AAACACATGC
7796164 TTTGCAAAAACACATG
1 TTTGCAAAAACACATG
7796180 ATAATCATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.27
Consensus pattern (17 bp):
TTTGCAAAAACACATGC
Found at i:7796840 original size:138 final size:137
Alignment explanation
Indices: 7796683--7797136 Score: 377
Period size: 138 Copynumber: 3.3 Consensus size: 137
7796673 CCTTACGCTA
* * **
7796683 GGTTTTTATAAAGGG-AAAAGATGGTACATTTACCAACCTCATCTTTGTAATATTCTTA-TCCTC
1 GGTTTTTAT-AAGGGAAAAAGATGGTACATTCACCAACCTCATCTCTGTGGTATTCTTACT-CTC
*** * **
7796746 ACATTGGGCTTTCATAAGAGAAAGAGATGGTATGTTCTCTAACCTCATCTTTATGGTATTCTTAA
64 ACACCAGGCTTTCATAAGAGAAAGAGATGGTATGTTCACTAACCTCATCCCTATGGTATTCTT-A
7796811 CCCCACATC-G
128 CCCCACA-CAG
** * * * * *
7796821 GGTTTTTATAAGGGAAAAAGATGGTATGTTCATCAACCTTAACCCTATGGTATTCTTACTCTCAC
1 GGTTTTTATAAGGGAAAAAGATGGTACATTCACCAACCTCATCTCTGTGGTATTCTTACTCTCAC
* * * *
7796886 ACCATGTTTTTATAAGAGGAAGAGATGGTATGTTCACTAACCTCATCCCTATGGTATTCTTACCC
66 ACCAGGCTTTCATAAGAGAAAGAGATGGTATGTTCACTAACCTCATCCCTATGGTATTCTTACCC
7796951 CACACAG
131 CACACAG
* * *
7796958 GACTTTTCTA-AAGGGAAAAA-ATGGTACATTCACTAACCTCATCTCTGTGGTATTCTTACCCGT
1 G-GTTTT-TATAAGGGAAAAAGATGGTACATTCACCAACCTCATCTCTGTGGTATTCTTACTC-T
* * ** * * * * * **
7797021 -ACACTAGGTTTTTGTAA-AGGGAAGAGATAGTACGTTTACCAACCTCGAT-CCTAAAGTATTCT
63 CACACCAGGCTTTCATAAGA-GAAAGAGATGGTATGTTCACTAACCTC-ATCCCTATGGTATTCT
* *
7797083 TACCCTCACATAA
126 TACCC-CACACAG
* * * *
7797096 GGCTTTTGTAA-GGAGAAGAGAAGGTACATTCACCAACCTCA
1 GGTTTTTATAAGGGA-AAAAGATGGTACATTCACCAACCTCA
7797137 ACCTTATGAT
Statistics
Matches: 256, Mismatches: 48, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
136 6 0.02
137 108 0.42
138 139 0.54
139 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (137 bp):
GGTTTTTATAAGGGAAAAAGATGGTACATTCACCAACCTCATCTCTGTGGTATTCTTACTCTCAC
ACCAGGCTTTCATAAGAGAAAGAGATGGTATGTTCACTAACCTCATCCCTATGGTATTCTTACCC
CACACAG
Found at i:7797150 original size:69 final size:68
Alignment explanation
Indices: 7796656--7797155 Score: 293
Period size: 69 Copynumber: 7.3 Consensus size: 68
7796646 CTAATTTTAA
* * * * * * *
7796656 CCTTATGGTA-TCTTTACCCTTAC-GCTAGGTTTTTATAAAGGGAAAAGATGGTACATTTACCAA
1 CCTTATGGTATTC-TTACCCTCACATC-AGGCTTTTAT-AAGGGAAGAGAAGGTACGTTCACCAA
7796719 CCTCAT
63 CCTCAT
* * ** * ** * * * * * *
7796725 CTTTGTAATATTCTTATCCTCACATTGGGCTTTCATAAGAGAAAGAGATGGTATGTTCTCTAACC
1 CCTTATGGTATTCTTACCCTCACATCAGGCTTTTATAAG-GGAAGAGAAGGTACGTTCACCAACC
7796790 TCAT
65 TCAT
* * * * * * *
7796794 CTTTATGGTATTCTTAACCC-CACATCGGGTTTTTATAAGGGAAAAAGATGGTATGTTCATCAAC
1 CCTTATGGTATTCTT-ACCCTCACATCAGGCTTTTATAAGGG-AAGAGAAGGTACGTTCACCAAC
* *
7796858 CTTAA
64 CTCAT
* * * * * * * *
7796863 CCCTATGGTATTCTTACTCTCACACCATGTTTTTATAAGAGGAAGAGATGGTATGTTCACTAACC
1 CCTTATGGTATTCTTACCCTCACATCAGGCTTTTATAAG-GGAAGAGAAGGTACGTTCACCAACC
7796928 TCAT
65 TCAT
* * * * *
7796932 CCCTATGGTATTCTTACCC-CACA-CAGGACTTTTCTAAAGGGAA-AAAATGGTACATTCACTAA
1 CCTTATGGTATTCTTACCCTCACATCAGG-CTTTTAT-AAGGGAAGAGAA-GGTACGTTCACCAA
7796994 CCTCAT
63 CCTCAT
* * * *
7797000 -CTCTGTGGTATTCTTACCCGT-ACA-CTAGGTTTTTGTAAAGGGAAGAGATA-GTACGTTTACC
1 CCT-TATGGTATTCTTACCC-TCACATC-AGGCTTTTAT-AAGGGAAGAGA-AGGTACGTTCACC
7797061 AACCTCGAT
61 AACCTC-AT
** * * *
7797070 CC-TAAAGTATTCTTACCCTCACATAAGGCTTTTGTAAGGAGAAGAGAAGGTACATTCACCAACC
1 CCTTATGGTATTCTTACCCTCACATCAGGCTTTTATAAGG-GAAGAGAAGGTACGTTCACCAACC
*
7797134 TCAA
65 TCAT
*
7797138 CCTTATGATATTCTTACC
1 CCTTATGGTATTCTTACC
7797156 TCCACACCAA
Statistics
Matches: 338, Mismatches: 70, Indels: 46
0.74 0.15 0.10
Matches are distributed among these distances:
67 6 0.02
68 62 0.18
69 254 0.75
70 14 0.04
71 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.33
Consensus pattern (68 bp):
CCTTATGGTATTCTTACCCTCACATCAGGCTTTTATAAGGGAAGAGAAGGTACGTTCACCAACCT
CAT
Found at i:7797647 original size:20 final size:20
Alignment explanation
Indices: 7797602--7797658 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
7797592 ATATGTTGAG
* *
7797602 TAGTTTAATTTAAGTTTTTT
1 TAGTTTAATTTTACTTTTTT
7797622 TAGTTTAATTTTACTTTATTT
1 TAGTTTAATTTTACTTT-TTT
* *
7797643 T-GTTTTATATTACTTT
1 TAGTTTAATTTTACTTT
7797659 CAGAATAGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 28 0.88
21 4 0.12
ACGTcount: A:0.23, C:0.04, G:0.07, T:0.67
Consensus pattern (20 bp):
TAGTTTAATTTTACTTTTTT
Found at i:7800464 original size:18 final size:18
Alignment explanation
Indices: 7800414--7800465 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
7800404 TTTAATATAT
*
7800414 TTTAAAA-ATAAAATTTA
1 TTTAAAATATAATATTTA
*
7800431 TTTAAAATATATTATTTA
1 TTTAAAATATAATATTTA
*
7800449 -TTAATATGATAATATTT
1 TTTAAAAT-ATAATATTT
7800466 TCGAGTCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
TTTAAAATATAATATTTA
Found at i:7801231 original size:30 final size:33
Alignment explanation
Indices: 7801178--7801244 Score: 95
Period size: 31 Copynumber: 2.1 Consensus size: 33
7801168 TTCGATGACT
*
7801178 TGGCATTTGAGATGATGATGTGGC-ATGTCACG
1 TGGCATTTGAGATGATGACGTGGCAATGTCACG
*
7801210 TGGCA-TTGAG-TGATGACGTGGCAATGTCGCG
1 TGGCATTTGAGATGATGACGTGGCAATGTCACG
7801241 TGGC
1 TGGC
7801245 GTTATACGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 11 0.34
31 16 0.50
32 5 0.16
ACGTcount: A:0.19, C:0.15, G:0.37, T:0.28
Consensus pattern (33 bp):
TGGCATTTGAGATGATGACGTGGCAATGTCACG
Found at i:7802267 original size:109 final size:109
Alignment explanation
Indices: 7802126--7802337 Score: 329
Period size: 110 Copynumber: 1.9 Consensus size: 109
7802116 TATAAGAAAT
* * *
7802126 TTTGAGTAAATTTAAATAAAAAGTAAATTGGGTAAGAGTTGAATAA-TTGCAAAAGAATGTGTAT
1 TTTGACTAAATTTAAATAAAAAGTAAATTGGGTAAGAGTTGAATAATTTGAAAAAAAATGTGTAT
*
7802190 TTGTAAATTATGAAAGTTGTAACTAAATCAACATATTTTGCTAA
66 TTATAAATTATGAAAGTTGTAACTAAATCAACATATTTTGCTAA
* *
7802234 TTTGACTAAATTTAAA-ATGAAAGATAAATTGGGTAAGAGTTGAATAATTTTAAAAAAAATGTGT
1 TTTGACTAAATTTAAATA-AAAAG-TAAATTGGGTAAGAGTTGAATAATTTGAAAAAAAATGTGT
*
7802298 ATTTATAAATTATGAAAGTTGTAACTAAATTAACATATTT
64 ATTTATAAATTATGAAAGTTGTAACTAAATCAACATATTT
7802338 AGTCATTTTA
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 19 0.20
109 23 0.24
110 51 0.54
ACGTcount: A:0.45, C:0.04, G:0.15, T:0.36
Consensus pattern (109 bp):
TTTGACTAAATTTAAATAAAAAGTAAATTGGGTAAGAGTTGAATAATTTGAAAAAAAATGTGTAT
TTATAAATTATGAAAGTTGTAACTAAATCAACATATTTTGCTAA
Found at i:7806500 original size:29 final size:29
Alignment explanation
Indices: 7806468--7806532 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
7806458 GAATATGATA
* *
7806468 TGTAATAATAATATTTTT-TCAACATAACG
1 TGTAATAACAACATTTTTCT-AACATAACG
*
7806497 TGTAATAACAACATTTTTCTAACATAATG
1 TGTAATAACAACATTTTTCTAACATAACG
7806526 TGTAATA
1 TGTAATA
7806533 TGTTTTTGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 31 0.97
30 1 0.03
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (29 bp):
TGTAATAACAACATTTTTCTAACATAACG
Found at i:7806599 original size:25 final size:26
Alignment explanation
Indices: 7806565--7806614 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
7806555 TAATAATATT
* *
7806565 TTTTTTTTAA-CGTGACGTATAATAA
1 TTTTTTTTAACCATGACGCATAATAA
7806590 TTTTTTTTAACCATGACGCATAATA
1 TTTTTTTTAACCATGACGCATAATA
7806615 TGTTTTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (26 bp):
TTTTTTTTAACCATGACGCATAATAA
Found at i:7806620 original size:26 final size:24
Alignment explanation
Indices: 7806565--7806630 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
7806555 TAATAATATT
* *
7806565 TTTTTTTTAACGTGACGTATAATAA
1 TTTTTTTTAACATGACGCATAAT-A
7806590 TTTTTTTTAACCATGACGCATAATA
1 TTTTTTTTAA-CATGACGCATAATA
*
7806615 -TGTTTTTATACATGAC
1 TTTTTTTTA-ACATGAC
7806631 ATGTAACAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
24 13 0.36
25 12 0.33
26 11 0.31
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.47
Consensus pattern (24 bp):
TTTTTTTTAACATGACGCATAATA
Found at i:7806650 original size:45 final size:45
Alignment explanation
Indices: 7806600--7806685 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
7806590 TTTTTTTTAA
* * *
7806600 CCATGACGCATAATATGTTTTTATACATGACATGTAACAACCTAC
1 CCATGACACATAACATGTTTTTATACATAACATGTAACAACCTAC
* *
7806645 CCATGACATATAACATGTTTTTATATATAACATGTAACAAC
1 CCATGACACATAACATGTTTTTATACATAACATGTAACAAC
7806686 TTAACCACGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (45 bp):
CCATGACACATAACATGTTTTTATACATAACATGTAACAACCTAC
Found at i:7806704 original size:45 final size:45
Alignment explanation
Indices: 7806609--7806705 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
7806599 ACCATGACGC
* * * *
7806609 ATAATATGTTTTTATACATGACATGTAACAACCTACCCATGACAT
1 ATAACATGTTTTTATACATAACATGTAACAACCTAACCACGACAT
* *
7806654 ATAACATGTTTTTATATATAACATGTAACAACTTAACCACGACA-
1 ATAACATGTTTTTATACATAACATGTAACAACCTAACCACGACAT
7806698 AGTAACAT
1 A-TAACAT
7806706 TATAACATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 1 0.02
45 44 0.98
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (45 bp):
ATAACATGTTTTTATACATAACATGTAACAACCTAACCACGACAT
Found at i:7806788 original size:15 final size:15
Alignment explanation
Indices: 7806770--7806820 Score: 93
Period size: 15 Copynumber: 3.4 Consensus size: 15
7806760 TAAAATTATA
7806770 AAAAATATTATTTTT
1 AAAAATATTATTTTT
7806785 AAAAATATTATTTTT
1 AAAAATATTATTTTT
*
7806800 AAAAAAATTATTTTT
1 AAAAATATTATTTTT
7806815 AAAAAT
1 AAAAAT
7806821 GCTCCTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAAATATTATTTTT
Found at i:7808164 original size:2 final size:2
Alignment explanation
Indices: 7808157--7808206 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
7808147 TAAAAGGCTG
7808157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7808199 AT AT AT AT
1 AT AT AT AT
7808207 CTACTTTTCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7809871 original size:31 final size:31
Alignment explanation
Indices: 7809836--7809895 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
7809826 CCAATTGAAC
7809836 ACTTTCCATTTTTGATTATTCTCAAAAGGAA
1 ACTTTCCATTTTTGATTATTCTCAAAAGGAA
7809867 ACTTTCCATTTTTGATTATTCTCAAAAGG
1 ACTTTCCATTTTTGATTATTCTCAAAAGG
7809896 GAAGATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.43
Consensus pattern (31 bp):
ACTTTCCATTTTTGATTATTCTCAAAAGGAA
Found at i:7814829 original size:19 final size:21
Alignment explanation
Indices: 7814798--7814836 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7814788 TAAATTAATA
7814798 TAAAAATTGTATATT-TTATT
1 TAAAAATTGTATATTATTATT
7814818 TAAAAATT-TATATTATTAT
1 TAAAAATTGTATATTATTAT
7814837 GGAATATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (21 bp):
TAAAAATTGTATATTATTATT
Found at i:7815563 original size:20 final size:20
Alignment explanation
Indices: 7815526--7815563 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7815516 CACAATACTA
*
7815526 TTTATTTCTCAACTATTTCT
1 TTTATTTCTCAACAATTTCT
7815546 TTTATTT-TCAATCAATTT
1 TTTATTTCTCAA-CAATTT
7815564 AATGGTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTATTTCTCAACAATTTCT
Found at i:7815861 original size:2 final size:2
Alignment explanation
Indices: 7815854--7815879 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7815844 AATATTGCTT
7815854 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7815880 AAGTAGTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7819985 original size:15 final size:15
Alignment explanation
Indices: 7819965--7820001 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
7819955 CTCTTTAATA
7819965 GAAGAAGCTATCATG
1 GAAGAAGCTATCATG
*
7819980 GAAGAACCTATCATG
1 GAAGAAGCTATCATG
7819995 GAAGAAG
1 GAAGAAG
7820002 TAGAGGATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.27, T:0.16
Consensus pattern (15 bp):
GAAGAAGCTATCATG
Found at i:7822796 original size:21 final size:22
Alignment explanation
Indices: 7822763--7822806 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
7822753 AAGTGGCTAA
7822763 TTTAAGTTATTTTA-GTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
* * *
7822784 TTTATGTTGTTTTATTTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
7822806 T
1 T
7822807 ACTTTAAGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (22 bp):
TTTAAGTTATTTTATGTTAAAT
Found at i:7828179 original size:235 final size:235
Alignment explanation
Indices: 7827768--7828238 Score: 879
Period size: 235 Copynumber: 2.0 Consensus size: 235
7827758 GATGCCTACT
7827768 GACCCGACACATGCTTCCCTGTTCACATCTAGTGATGCCCACTTATTTTTTATCATTATTCACAG
1 GACCCGACACATGCTTCCCTGTTCACATCTAGTGATGCCCACTTATTTTTTATCATTATTCACAG
*
7827833 CAGTTGAATAAGATTTTGATTGATTTAGAGGAAGCTTTTTTGTGAACGAGACTGCTCCAAATAAA
66 CAATTGAATAAGATTTTGATTGATTTAGAGGAAGCTTTTTTGTGAACGAGACTGCTCCAAATAAA
*
7827898 GGCAGTGGTTCCCCGTGAAGGTTGAGTACCCAATGGTATTGTAACATGTCGGTTCCCGATGTGGT
131 GGCAGTGGTTCCCCGTGAAGGTTGAGTACCCAATGGTATTGTAACATCTCGGTTCCCGATGTGGT
* *
7827963 AGGAGAGCCTCGAGTGTGTACTAAAACATTTATGACTTGG
196 AGGAGAGCCTCGAGTATGTACTAAAACACTTATGACTTGG
*
7828003 GACCCGACGCATGCTTCCCTGTTCACATCTAGTGATGCCCACTTATTTTTTATCATTATTCACAG
1 GACCCGACACATGCTTCCCTGTTCACATCTAGTGATGCCCACTTATTTTTTATCATTATTCACAG
*
7828068 CAATTGAATAAGATTTTGATTGATTTAGAGGAAGCTTTTTTGTGGACGAGACTGCTCCAAATAAA
66 CAATTGAATAAGATTTTGATTGATTTAGAGGAAGCTTTTTTGTGAACGAGACTGCTCCAAATAAA
*
7828133 GGCAGTGGTTCCCGGTGAAGGTTGAGTACCCAATGGTATTGTAACATCTCGGTTCCCGATGTGGT
131 GGCAGTGGTTCCCCGTGAAGGTTGAGTACCCAATGGTATTGTAACATCTCGGTTCCCGATGTGGT
7828198 AGGAGAGCCTCGAGTATGTACTAAAACACTTATGACTTGG
196 AGGAGAGCCTCGAGTATGTACTAAAACACTTATGACTTGG
7828238 G
1 G
7828239 TGTGTGACTT
Statistics
Matches: 229, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
235 229 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (235 bp):
GACCCGACACATGCTTCCCTGTTCACATCTAGTGATGCCCACTTATTTTTTATCATTATTCACAG
CAATTGAATAAGATTTTGATTGATTTAGAGGAAGCTTTTTTGTGAACGAGACTGCTCCAAATAAA
GGCAGTGGTTCCCCGTGAAGGTTGAGTACCCAATGGTATTGTAACATCTCGGTTCCCGATGTGGT
AGGAGAGCCTCGAGTATGTACTAAAACACTTATGACTTGG
Found at i:7833785 original size:44 final size:44
Alignment explanation
Indices: 7833690--7833832 Score: 117
Period size: 44 Copynumber: 3.2 Consensus size: 44
7833680 TTGTTTAAAA
* * * * * ** * *
7833690 TTTTGAAGTTAAACAACCTCATTCTAGATAAAGAGTTTATTCGT
1 TTTTAAAGTTACACAACCTCATTCCAAATGAAGAACTAATTCTT
* *
7833734 TTGTAAAGTTGCACAACCTCATTCCAAAT-AAGGAACTAATTCTT
1 TTTTAAAGTTACACAACCTCATTCCAAATGAA-GAACTAATTCTT
* * * ** *
7833778 TTTTAAAGTTACGCAATCTCATTCCGAATGAAGAGGTTATTCTT
1 TTTTAAAGTTACACAACCTCATTCCAAATGAAGAACTAATTCTT
7833822 TTTTAAAGTTA
1 TTTTAAAGTTA
7833833 TATAGCCTCA
Statistics
Matches: 79, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
43 2 0.03
44 75 0.95
45 2 0.03
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (44 bp):
TTTTAAAGTTACACAACCTCATTCCAAATGAAGAACTAATTCTT
Found at i:7833843 original size:44 final size:44
Alignment explanation
Indices: 7833720--7834016 Score: 118
Period size: 44 Copynumber: 6.6 Consensus size: 44
7833710 ATTCTAGATA
* * * ** * *
7833720 AAGAGTTTATTCGTTTGTAAAGTTGCACAACCTCATTCCAAAT-
1 AAGAGCTTATTCTTTTTTAAAGTTATACAGCCTCATTCCGAATG
* * ** **
7833763 AAGGAACTAATTCTTTTTTAAAGTTACGCAATCTCATTCCGAATG
1 AA-GAGCTTATTCTTTTTTAAAGTTATACAGCCTCATTCCGAATG
* * ** * *
7833808 AAGAGGTTATTCTTTTTTAAAGTTATATAGCCTCATTATGGACG
1 AAGAGCTTATTCTTTTTTAAAGTTATACAGCCTCATTCCGAATG
* * *
7833852 AAAAGCTTACTTATTGTAACTTATTGTAAAGTTA-AGCAACCTCATTCC-AGATG
1 AAGAG----CTTA-T-T--CTT-TTTTAAAGTTATA-CAGCCTCATTCCGA-ATG
* * * * *
7833905 AGGAGGTTATTCTTTTTTAAAATTATACAGTCTCATT-CTAGATG
1 AAGAGCTTATTCTTTTTTAAAGTTATACAGCCTCATTCCGA-ATG
* ** * * ** *
7833949 AAAATATTATTCCTTTTTAAA-ATATGTAGCCTCATTCCAAATG
1 AAGAGCTTATTCTTTTTTAAAGTTATACAGCCTCATTCCGAATG
*
7833992 AAGAGCTTATTCTCTTTTAAAGTTA
1 AAGAGCTTATTCTTTTTTAAAGTTA
7834017 CATTGCCTCA
Statistics
Matches: 184, Mismatches: 53, Indels: 33
0.68 0.20 0.12
Matches are distributed among these distances:
43 33 0.18
44 108 0.59
45 6 0.03
47 1 0.01
48 4 0.02
49 4 0.02
50 1 0.01
52 4 0.02
53 23 0.12
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (44 bp):
AAGAGCTTATTCTTTTTTAAAGTTATACAGCCTCATTCCGAATG
Found at i:7834002 original size:43 final size:44
Alignment explanation
Indices: 7833891--7834009 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 44
7833881 AGTTAAGCAA
* * *
7833891 CCTCATTCCAGATGAGGAGGTTATTCTTTTTTAAAATTATACAG
1 CCTCATTCCAGATGAAGAGATTATTCCTTTTTAAAATTATACAG
* * * * **
7833935 TCTCATTCTAGATGAAAATATTATTCCTTTTTAAAA-TATGTAG
1 CCTCATTCCAGATGAAGAGATTATTCCTTTTTAAAATTATACAG
* *
7833978 CCTCATTCCAAATGAAGAGCTTATTCTCTTTT
1 CCTCATTCCAGATGAAGAGATTATTC-CTTTT
7834010 AAAGTTACAT
Statistics
Matches: 59, Mismatches: 15, Indels: 2
0.78 0.20 0.03
Matches are distributed among these distances:
43 25 0.42
44 34 0.58
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (44 bp):
CCTCATTCCAGATGAAGAGATTATTCCTTTTTAAAATTATACAG
Found at i:7834010 original size:43 final size:44
Alignment explanation
Indices: 7833891--7834012 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 44
7833881 AGTTAAGCAA
* * *
7833891 CCTCATTCCAGATGAGGAGGTTATTCTTTTTTAAAATTATACAG
1 CCTCATTCCAGATGAAGAGATTATTCTCTTTTAAAATTATACAG
* * * * **
7833935 TCTCATTCTAGATGAAAATATTATTC-CTTTTTAAAA-TATGTAG
1 CCTCATTCCAGATGAAGAGATTATTCTC-TTTTAAAATTATACAG
* *
7833978 CCTCATTCCAAATGAAGAGCTTATTCTCTTTTAAA
1 CCTCATTCCAGATGAAGAGATTATTCTCTTTTAAA
7834013 GTTACATTGC
Statistics
Matches: 61, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
43 32 0.52
44 29 0.48
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.40
Consensus pattern (44 bp):
CCTCATTCCAGATGAAGAGATTATTCTCTTTTAAAATTATACAG
Found at i:7834708 original size:7 final size:7
Alignment explanation
Indices: 7834696--7834743 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
7834686 CCTTTTTATA
7834696 TTTATTT
1 TTTATTT
7834703 TTTATTT
1 TTTATTT
**
7834710 TTTATGA
1 TTTATTT
*
7834717 TTTAGATT
1 TTTA-TTT
7834725 TTTA-TT
1 TTTATTT
7834731 TTTATTT
1 TTTATTT
7834738 TTTATT
1 TTTATT
7834744 AAGAGTTTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
6 6 0.18
7 24 0.71
8 4 0.12
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (7 bp):
TTTATTT
Found at i:7834719 original size:21 final size:21
Alignment explanation
Indices: 7834688--7834733 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
7834678 GTGTCTTTCC
*
7834688 TTTTTATATTTA-TTTTTTAT
1 TTTTTATATTTAGATTTTTAT
7834708 TTTTTATGATTTAGATTTTTAT
1 TTTTTAT-ATTTAGATTTTTAT
7834730 TTTT
1 TTTT
7834734 ATTTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.30
21 5 0.22
22 11 0.48
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (21 bp):
TTTTTATATTTAGATTTTTAT
Found at i:7835050 original size:186 final size:186
Alignment explanation
Indices: 7834736--7835252 Score: 552
Period size: 186 Copynumber: 2.8 Consensus size: 186
7834726 TTATTTTTAT
*
7834736 TTTTTATTAAGAGTTTACATAGATTTATGAAAATTCTCCAATGATAAAATCTCAAAGATACCAAA
1 TTTTTATTAAGAATTTACATAGATTTATGAAAATTCTCCAATGATAAAATCTCAAAGATACCAAA
* * **
7834801 AGAGATGGCTTCTTGGAAATTTCTAGGTAAAAAAATCTTTCAAAATTATGTCATAAGAGTTTGAA
66 AGAGATGACTTCTTGGAAATTTCTAAGTAAAAAAATCTTTCAAAATTATACCATAAGAGTTTGAA
*
7834866 GATTTTAGAAAATTTTCAATACCAAGGATTTCCACAAATATTTATTTTAGTTTTCA
131 GATTTTAGAAAATTTTCAATACCAACGATTTCCACAAATATTTATTTTAGTTTTCA
* ** * * *
7834922 TTTTTATTAAGAATTTACATAGATTTATGGAAATTCTGTAATGATAAAATCTCTAGGATATCAAA
1 TTTTTATTAAGAATTTACATAGATTTATGAAAATTCTCCAATGATAAAATCTCAAAGATACCAAA
* * *
7834987 AGAGATGACTTCTTGGGAATTTCTAAGTGAGAAAATCTTTCAAAATTATACCATAAGAGTTTGAA
66 AGAGATGACTTCTTGGAAATTTCTAAGTAAAAAAATCTTTCAAAATTATACCATAAGAGTTTGAA
* * * * * ** * ****
7835052 GATTTTGGAAAATTTTTAATACTAACGATTTGCATAAATATTTAAATAAAAAAT-A
131 GATTTTAGAAAATTTTCAATACCAACGATTTCCACAAATATTTATTTTAGTTTTCA
* *** * * **
7835107 ATAACAATATAGAA-TTAAATAG----AT--AAATTCTCCAATGATGGAATCTCAACA-ATACCA
1 TTTTTATTA-AGAATTTACATAGATTTATGAAAATTCTCCAATGATAAAATCTCAA-AGATACCA
* * * *
7835164 AAAGAGGTGACTTCTT-GAGAATTTCT-AGATGAAAAAATCTTTCAAAATTATGCCATAAGAGCT
64 AAAGAGATGACTTCTTGGA-AATTTCTAAG-TAAAAAAATCTTTCAAAATTATACCATAAGAGTT
* *
7835227 TGAAGATTTTAAAAAATTTTCGATAC
127 TGAAGATTTTAGAAAATTTTCAATAC
7835253 AAGTTAACAA
Statistics
Matches: 278, Mismatches: 49, Indels: 15
0.81 0.14 0.04
Matches are distributed among these distances:
178 3 0.01
179 100 0.36
181 2 0.01
185 12 0.04
186 161 0.58
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (186 bp):
TTTTTATTAAGAATTTACATAGATTTATGAAAATTCTCCAATGATAAAATCTCAAAGATACCAAA
AGAGATGACTTCTTGGAAATTTCTAAGTAAAAAAATCTTTCAAAATTATACCATAAGAGTTTGAA
GATTTTAGAAAATTTTCAATACCAACGATTTCCACAAATATTTATTTTAGTTTTCA
Found at i:7849833 original size:27 final size:27
Alignment explanation
Indices: 7849774--7849836 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
7849764 ATTACATTAG
* * *
7849774 GGGTGTTCCAAGCATGGAAGCATCTAA
1 GGGTGTTCCAAGCACGGAAGCACCAAA
* * *
7849801 GAGTGTTCTAAGCACGGAAGCGCCAAA
1 GGGTGTTCCAAGCACGGAAGCACCAAA
7849828 GGGTGTTCC
1 GGGTGTTCC
7849837 TAATGCAGAA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.32, T:0.21
Consensus pattern (27 bp):
GGGTGTTCCAAGCACGGAAGCACCAAA
Found at i:7849847 original size:27 final size:26
Alignment explanation
Indices: 7849817--7849892 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
7849807 TCTAAGCACG
*
7849817 GAAGCGCCAAAGGGTGTTCCTAATGCA
1 GAAGCGCC-AAGGGTGTTCCAAATGCA
* * *
7849844 GAAGCACTCAAGAGTGTTTCAAATGCA
1 GAAGCGC-CAAGGGTGTTCCAAATGCA
*
7849871 GAAACGCCTAAGGGTGTTCCAA
1 GAAGCGCC-AAGGGTGTTCCAA
7849893 GCTCATAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 1 0.03
27 37 0.95
28 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.20
Consensus pattern (26 bp):
GAAGCGCCAAGGGTGTTCCAAATGCA
Found at i:7862835 original size:101 final size:101
Alignment explanation
Indices: 7862723--7863013 Score: 514
Period size: 101 Copynumber: 2.9 Consensus size: 101
7862713 TGAGTAAATT
* *
7862723 TAAATAAAAGGTAAATTAGGTAAGAGTTGAATAATTTCAAAAGAATGTATATTTGTAAATTGTGA
1 TAAATAAAAGGTAAATTAGATAACAGTTGAATAATTTCAAAAGAATGTATATTTGTAAATTGTGA
7862788 AAGTTGTAACTAAGTCAATATATTTTGCTAATTTGA
66 AAGTTGTAACTAAGTCAATATATTTTGCTAATTTGA
7862824 TAAATAAAAGGTAAATTAGATAACAGTTGAATAATTTCAAAAGAATGTATATTTGTAAATTGTGA
1 TAAATAAAAGGTAAATTAGATAACAGTTGAATAATTTCAAAAGAATGTATATTTGTAAATTGTGA
7862889 AAGTTGTAACTAAGTCAATATATTTTGCTAATTTGA
66 AAGTTGTAACTAAGTCAATATATTTTGCTAATTTGA
7862925 TAAATAAAAGGTAAATTAGATAACAGTTGAATAATTTCAAAAGAAATG--TATTTGTAAATTGTG
1 TAAATAAAAGGTAAATTAGATAACAGTTGAATAATTTCAAAAG-AATGTATATTTGTAAATTGTG
* * *
7862988 AAAGTTGTAACCAAATCAACATATTT
65 AAAGTTGTAACTAAGTCAATATATTT
7863014 AGTCATTTTA
Statistics
Matches: 184, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
100 38 0.21
101 142 0.77
102 4 0.02
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.35
Consensus pattern (101 bp):
TAAATAAAAGGTAAATTAGATAACAGTTGAATAATTTCAAAAGAATGTATATTTGTAAATTGTGA
AAGTTGTAACTAAGTCAATATATTTTGCTAATTTGA
Found at i:7863985 original size:29 final size:29
Alignment explanation
Indices: 7863939--7864005 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
7863929 TATTTAAATT
** *
7863939 TAAAATAAATAATTATAAAAACAATTATAA
1 TAAAA-AAATAACAATAAAAACAAATATAA
* *
7863969 TAAAAAAATAACAATAACATCAAATATAA
1 TAAAAAAATAACAATAAAAACAAATATAA
*
7863998 CAAAAAAA
1 TAAAAAAA
7864006 ATTAAAATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (29 bp):
TAAAAAAATAACAATAAAAACAAATATAA
Found at i:7864196 original size:36 final size:35
Alignment explanation
Indices: 7864156--7864224 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 35
7864146 GTGTCATCTA
7864156 TATACGTTTAAACACAATAACATGATTAAACATGTG
1 TATACGTTTAAACACAATAACATGATT-AACATGTG
* *
7864192 TATACGTTTAAACACGATAATATGATTAACATG
1 TATACGTTTAAACACAATAACATGATTAACATG
7864225 ATTAATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 6 0.19
36 25 0.81
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (35 bp):
TATACGTTTAAACACAATAACATGATTAACATGTG
Found at i:7866985 original size:17 final size:17
Alignment explanation
Indices: 7866954--7866986 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7866944 TTCTTGATAA
7866954 AATAAAACTCGTTATTG
1 AATAAAACTCGTTATTG
7866971 AATAATAACTC-TTATT
1 AATAA-AACTCGTTATT
7866987 TTATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.39
Consensus pattern (17 bp):
AATAAAACTCGTTATTG
Found at i:7867187 original size:28 final size:29
Alignment explanation
Indices: 7867137--7867241 Score: 110
Period size: 28 Copynumber: 3.7 Consensus size: 29
7867127 TCTAGTATTT
*
7867137 AATTAAGACAAAAAATATTTTTCTTATCTTA
1 AATTAAGACAAAACATA--TTTCTTATCTTA
*
7867168 AATTAAGA-AAAACATATTTCTTGTC-TA
1 AATTAAGACAAAACATATTTCTTATCTTA
* *
7867195 AATTAAGACCAAACATGTTTTCTTAT-TTA
1 AATTAAGACAAAACAT-ATTTCTTATCTTA
*
7867224 AATTAAGGC-AAACATATT
1 AATTAAGACAAAACATATT
7867242 AAAGCTGTCA
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
27 12 0.19
28 20 0.31
29 17 0.27
30 7 0.11
31 8 0.12
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (29 bp):
AATTAAGACAAAACATATTTCTTATCTTA
Found at i:7867225 original size:29 final size:28
Alignment explanation
Indices: 7867132--7867235 Score: 104
Period size: 29 Copynumber: 3.6 Consensus size: 28
7867122 ACAACTCTAG
*
7867132 TATTT-AATTAAGACAAAAAATATTTTTCT
1 TATTTAAATTAAGAC--AAAACATTTTTCT
*
7867161 TATCTTAAATTAAGA-AAAACATATTTCT
1 TAT-TTAAATTAAGACAAAACATTTTTCT
* * *
7867189 TGTCTAAATTAAGACCAAACATGTTTTCT
1 TATTTAAATTAAGACAAAACAT-TTTTCT
*
7867218 TATTTAAATTAAGGCAAA
1 TATTTAAATTAAGACAAA
7867236 CATATTAAAG
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
27 10 0.16
28 19 0.31
29 22 0.36
30 2 0.03
31 8 0.13
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (28 bp):
TATTTAAATTAAGACAAAACATTTTTCT
Found at i:7878336 original size:46 final size:47
Alignment explanation
Indices: 7878223--7878345 Score: 212
Period size: 47 Copynumber: 2.6 Consensus size: 47
7878213 AGAAAAAATG
*
7878223 TAGACAAGAAAAGTGTAAAAGGGCAAACGTGACTACCTACAAAACAA
1 TAGACAAGAAAAGTGTAAAAGGGCAAACATGACTACCTACAAAACAA
* *
7878270 TAGACAAGAAAAGTGTAAAAGGGCAAACATGACTATCTACAAAGC-A
1 TAGACAAGAAAAGTGTAAAAGGGCAAACATGACTACCTACAAAACAA
7878316 TAGACAAGAAAAGTGTAAAAGGGCAAACAT
1 TAGACAAGAAAAGTGTAAAAGGGCAAACAT
7878346 ATGCCTACCT
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 31 0.42
47 42 0.58
ACGTcount: A:0.51, C:0.15, G:0.20, T:0.14
Consensus pattern (47 bp):
TAGACAAGAAAAGTGTAAAAGGGCAAACATGACTACCTACAAAACAA
Found at i:7887152 original size:2 final size:2
Alignment explanation
Indices: 7887140--7887174 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7887130 ATTAATTAAT
*
7887140 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7887175 CTTGTTAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7898687 original size:14 final size:15
Alignment explanation
Indices: 7898662--7898691 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7898652 TTATATTTCT
7898662 AACATATAATATAAA
1 AACATATAATATAAA
7898677 AACAT-TAATATAAA
1 AACATATAATATAAA
7898691 A
1 A
7898692 TTTAAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (15 bp):
AACATATAATATAAA
Found at i:7904469 original size:73 final size:73
Alignment explanation
Indices: 7904377--7904521 Score: 220
Period size: 73 Copynumber: 2.0 Consensus size: 73
7904367 TTAATGAACT
* *
7904377 TTTATATAACTTTAATCAAAA-TTTAAAAATATCTCATATTTTACCTTAATTAACTAATGATTGG
1 TTTATATAACTTTAATCAAAACTTT-AAAATATCTCATATTTTAACTTAATTAACTAATGATTGA
7904441 ATTTATTTA
65 ATTTATTTA
* * * *
7904450 TTTATATAATTTTGATCAAAACTTTAAAATATCTCATGTTTTAACTTAATTAATTAATGATTGAA
1 TTTATATAACTTTAATCAAAACTTTAAAATATCTCATATTTTAACTTAATTAACTAATGATTGAA
7904515 TTTATTT
66 TTTATTT
7904522 TTCAAATTAA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 62 0.95
74 3 0.05
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.48
Consensus pattern (73 bp):
TTTATATAACTTTAATCAAAACTTTAAAATATCTCATATTTTAACTTAATTAACTAATGATTGAA
TTTATTTA
Found at i:7909479 original size:21 final size:20
Alignment explanation
Indices: 7909455--7909501 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
7909445 ATAAATTAAA
* *
7909455 AATTTATTTTATCTCTTATGT
1 AATTTATTTTAAC-ATTATGT
*
7909476 AATTTTTTTTAACATTATGT
1 AATTTATTTTAACATTATGT
7909496 AATTTA
1 AATTTA
7909502 ACTTATATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (20 bp):
AATTTATTTTAACATTATGT
Found at i:7919585 original size:2 final size:2
Alignment explanation
Indices: 7919578--7919610 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7919568 ATCAGACAAG
7919578 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7919611 AACATATGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7924159 original size:22 final size:23
Alignment explanation
Indices: 7924111--7924160 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
7924101 AACAAATTTT
* *
7924111 TATTATATTTTATTTTAAATTAA
1 TATTAAATTTTATTTCAAATTAA
*
7924134 -ATTAAATTTTATTTCATA-TAA
1 TATTAAATTTTATTTCAAATTAA
7924155 TATTAA
1 TATTAA
7924161 TAAAATAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (23 bp):
TATTAAATTTTATTTCAAATTAA
Found at i:7949600 original size:126 final size:126
Alignment explanation
Indices: 7949435--7949678 Score: 319
Period size: 126 Copynumber: 1.9 Consensus size: 126
7949425 TTAATTATAA
* * * * *
7949435 TTATTAATATTTGAATTATAATCATATTTAAATTATAAATAAAATATTAATATTTAAATTATCAA
1 TTATTAATATTTGAATCATAATAACATTTAAATTATAAATAAAATATTAATATTAAAATGATCAA
** *
7949500 CTATTAATATTATTATAAAAAGTA-TAAATTTTTAATTATATATTATAAAAATAACATAAAT
66 CTATTAATATTATTATAAAAAAAATTAAA-TTTTAATAATATATTATAAAAATAACATAAAT
* * * * * *
7949561 TTATTTATATTTTAATCATAATAACATTTCAATTGTAAATAAAATGTTAATATTAAAATGATCGA
1 TTATTAATATTTGAATCATAATAACATTTAAATTATAAATAAAATATTAATATTAAAATGATCAA
* * *
7949626 TTATTAATATTATTATAAAAAAAATTTAATTTTAATAATATATTATAAGAATA
66 CTATTAATATTATTATAAAAAAAATTAAATTTTAATAATATATTATAAAAATA
7949679 TATTTTAAAT
Statistics
Matches: 100, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
126 97 0.97
127 3 0.03
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (126 bp):
TTATTAATATTTGAATCATAATAACATTTAAATTATAAATAAAATATTAATATTAAAATGATCAA
CTATTAATATTATTATAAAAAAAATTAAATTTTAATAATATATTATAAAAATAACATAAAT
Found at i:7949822 original size:27 final size:27
Alignment explanation
Indices: 7949773--7949824 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
7949763 ATAATCAAGA
* *
7949773 ATTAATATTTTAAATTAATAATAAATT
1 ATTAATATTTAAAAATAATAATAAATT
7949800 ATTAATATTTAAAAAATAA-AATAAA
1 ATTAATATTT-AAAAATAATAATAAA
7949825 ATAACAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (27 bp):
ATTAATATTTAAAAATAATAATAAATT
Found at i:7949910 original size:160 final size:142
Alignment explanation
Indices: 7949707--7950126 Score: 402
Period size: 160 Copynumber: 2.8 Consensus size: 142
7949697 TGATTAAAAT
*
7949707 TATTAATATTTTAATCATATTATCATT-TAAATTATAAATAAAATATTAATATTTAAATAATCAA
1 TATTAATATTTTAA-AATATTA--ATTATAAATTATAAATAAAATATTAATATTTAAATAATCAA
** * *
7949771 GAATTAATATTTTAAATTAATAATAAATTATTAATATTTAAAAAATAAAATAAAATAACAATAAA
63 TTATTAATATTTTAAATAAATTATAAATTATTAATATTT-AAAAATAAAATAAAATAACAAT-AA
7949836 CAATCTTAATAATGTTTAAAGTATAAATTACA
126 C-AT-TT-A-AAT-TTT-AAG-------T--A
* * * *
7949868 TATTAATATTTTAAAATATTAATTACTAAATTATAGATAAAATATTAATATTTTAATTATAAATT
1 TATTAATATTTTAAAATATTAATTA-TAAATTATAAATAAAATATTAATATTTAAATAATCAATT
* * ** * * *
7949933 ATGAATATTTTAAATAAATTTTAAAACAGTAATATTTAAAAATAAAA-AAAATCATAATAACATT
65 ATTAATATTTTAAATAAATTATAAATTATTAATATTTAAAAATAAAATAAAATAACAATAACATT
7949997 TAAATTTTAAGTA
130 TAAATTTTAAGTA
* * *
7950010 -A--AATATTTTAAAATATTAATGATTAAAATATAAATAAAATATTACATATTTAGATAATCAAT
1 TATTAATATTTTAAAATATTAATTA-TAAATTATAAATAAAATATTA-ATATTTAAATAATCAAT
* *
7950072 TATTAATATTTTAAA-AAATTATAAATTATTATTATTTAAAAATAATATAAAATAA
64 TATTAATATTTTAAATAAATTATAAATTATTAATATTTAAAAATAAAATAAAATAA
7950127 AAATTAATAA
Statistics
Matches: 223, Mismatches: 32, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
139 65 0.29
140 33 0.15
141 1 0.00
142 1 0.00
144 1 0.00
151 3 0.01
152 3 0.01
153 3 0.01
154 1 0.00
155 2 0.01
156 2 0.01
157 3 0.01
158 12 0.05
159 10 0.04
160 69 0.31
161 14 0.06
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (142 bp):
TATTAATATTTTAAAATATTAATTATAAATTATAAATAAAATATTAATATTTAAATAATCAATTA
TTAATATTTTAAATAAATTATAAATTATTAATATTTAAAAATAAAATAAAATAACAATAACATTT
AAATTTTAAGTA
Found at i:7949929 original size:22 final size:22
Alignment explanation
Indices: 7949904--7949945 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7949894 TAAATTATAG
*
7949904 ATAAAATATTAATATTTTAATT
1 ATAAAATATGAATATTTTAATT
*
7949926 ATAAATTATGAATATTTTAA
1 ATAAAATATGAATATTTTAA
7949946 ATAAATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
ATAAAATATGAATATTTTAATT
Found at i:7949950 original size:42 final size:42
Alignment explanation
Indices: 7949852--7949950 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 42
7949842 TAATAATGTT
* * * *
7949852 TAAAGTATAAATTACATATTAATATTTTAAAATATTAATTAC
1 TAAATTATAAATAAAATATTAATATTTTAAAATATAAATTAC
* *
7949894 TAAATTATAGATAAAATATTAATATTTT-AATTATAAATTA-
1 TAAATTATAAATAAAATATTAATATTTTAAAATATAAATTAC
*
7949934 TGAATATTTTAAATAAA
1 T-AA-ATTATAAATAAA
7949951 TTTTAAAACA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
40 1 0.02
41 12 0.26
42 34 0.72
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (42 bp):
TAAATTATAAATAAAATATTAATATTTTAAAATATAAATTAC
Found at i:7949951 original size:20 final size:21
Alignment explanation
Indices: 7949904--7949952 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
7949894 TAAATTATAG
* *
7949904 ATAAAATATTAATATTTTAATT
1 ATAAATTATGAATATTTTAA-T
7949926 ATAAATTATGAATATTTTAA-
1 ATAAATTATGAATATTTTAAT
7949946 ATAAATT
1 ATAAATT
7949953 TTAAAACAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.28
22 18 0.72
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
ATAAATTATGAATATTTTAAT
Found at i:7950107 original size:26 final size:26
Alignment explanation
Indices: 7950069--7950122 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
7950059 TTAGATAATC
*
7950069 AATTATTAATATTTTAAAAA-ATTATA
1 AATTATTAATA-TTTAAAAATAATATA
*
7950095 AATTATTATTATTTAAAAATAATATA
1 AATTATTAATATTTAAAAATAATATA
7950121 AA
1 AA
7950123 ATAAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
AATTATTAATATTTAAAAATAATATA
Found at i:7950283 original size:27 final size:27
Alignment explanation
Indices: 7950253--7950304 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
7950243 TAAACTACAT
7950253 AATAACTAATT-TATTCTATTTTTATAG
1 AATAACT-ATTCTATTCTATTTTTATAG
*
7950280 AATAACTATTCTATTTTATTTTTAT
1 AATAACTATTCTATTCTATTTTTAT
7950305 TTATTCCGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 3 0.13
27 20 0.87
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.56
Consensus pattern (27 bp):
AATAACTATTCTATTCTATTTTTATAG
Found at i:7950697 original size:2 final size:2
Alignment explanation
Indices: 7950643--7950681 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7950633 GAAGAAGGAC
7950643 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7950682 CATACACACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7951716 original size:15 final size:15
Alignment explanation
Indices: 7951692--7951721 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7951682 AAATGCAGTC
*
7951692 TTTAATTTAAAAAAT
1 TTTAACTTAAAAAAT
7951707 TTTAACTTAAAAAAT
1 TTTAACTTAAAAAAT
7951722 GTAACTTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTAACTTAAAAAAT
Found at i:7953546 original size:41 final size:41
Alignment explanation
Indices: 7953500--7953583 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
7953490 TTTCATTTAT
* *
7953500 ATATTATATTAAATTAGCAAATAAAATTATTTAGAGGTTAA
1 ATATTATATTAAATTAGCAAATAAAATTATTTAAAAGTTAA
* * **
7953541 ATATTATATTGATTTAGTTAATAAAATTATTTAAAAGTTAA
1 ATATTATATTAAATTAGCAAATAAAATTATTTAAAAGTTAA
7953582 AT
1 AT
7953584 GAAAAATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.48, C:0.01, G:0.08, T:0.43
Consensus pattern (41 bp):
ATATTATATTAAATTAGCAAATAAAATTATTTAAAAGTTAA
Found at i:7956524 original size:2 final size:2
Alignment explanation
Indices: 7956517--7956557 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7956507 GCTCCTTATC
7956517 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7956558 TTTCTGAATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7968833 original size:3 final size:3
Alignment explanation
Indices: 7968825--7968865 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7968815 CCTCAGGTAA
7968825 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7968866 CATTAGATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7974157 original size:22 final size:23
Alignment explanation
Indices: 7974132--7974175 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7974122 AAAAAAACCC
7974132 TAAACCACAT-AACAAAAAAAAT
1 TAAACCACATAAACAAAAAAAAT
**
7974154 TAAATTACATAAACAAAAAAAA
1 TAAACCACATAAACAAAAAAAA
7974176 AAATCTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.70, C:0.14, G:0.00, T:0.16
Consensus pattern (23 bp):
TAAACCACATAAACAAAAAAAAT
Found at i:7974686 original size:27 final size:27
Alignment explanation
Indices: 7974640--7974691 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
7974630 ACGGGAAGAT
* *
7974640 GAGGAGGAGGAGGATACTGATGTGGCA
1 GAGGAGGAAGAGGATACTGACGTGGCA
* *
7974667 GAGGAGGAAGATGATGCTGACGTGG
1 GAGGAGGAAGAGGATACTGACGTGG
7974692 AAATTGAGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.29, C:0.08, G:0.48, T:0.15
Consensus pattern (27 bp):
GAGGAGGAAGAGGATACTGACGTGGCA
Found at i:7975906 original size:20 final size:20
Alignment explanation
Indices: 7975873--7975912 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7975863 TTTTTTTAAA
* * *
7975873 TATTTTAAATATATTTAATT
1 TATTTAAAAAATATATAATT
7975893 TATTTAAAAAATATATAATT
1 TATTTAAAAAATATATAATT
7975913 AATCATGTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTTAAAAAATATATAATT
Found at i:7977500 original size:28 final size:28
Alignment explanation
Indices: 7977475--7977675 Score: 197
Period size: 28 Copynumber: 7.2 Consensus size: 28
7977465 CATTATATTA
* * *
7977475 AAAAATATAGTTATTATACGTCATATTG
1 AAAAATATAGTTTTTACACGTCATGTTG
* * * * *
7977503 -ATAATTTAGTTGTTACTCGTCATGTTA
1 AAAAATATAGTTTTTACACGTCATGTTG
* * * *
7977530 AAAAATATAATTGTTACATGTTATGTTG
1 AAAAATATAGTTTTTACACGTCATGTTG
*
7977558 AAAAATATAGTTTTTACATGTCATGTTG
1 AAAAATATAGTTTTTACACGTCATGTTG
* * *
7977586 AAAAATTTAATTTTTACATGTCATGTTG
1 AAAAATATAGTTTTTACACGTCATGTTG
7977614 AAAAATATAGTTTTTACACGTCAATGTTG
1 AAAAATATAGTTTTTACACGTC-ATGTTG
* * * * *
7977643 AAAAATTTAATTTTTACATGCCATGATG
1 AAAAATATAGTTTTTACACGTCATGTTG
7977671 AAAAA
1 AAAAA
7977676 GTTGTTACAT
Statistics
Matches: 144, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
27 20 0.14
28 100 0.69
29 24 0.17
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.41
Consensus pattern (28 bp):
AAAAATATAGTTTTTACACGTCATGTTG
Found at i:7977662 original size:57 final size:56
Alignment explanation
Indices: 7977509--7977675 Score: 244
Period size: 56 Copynumber: 3.0 Consensus size: 56
7977499 ATTGATAATT
* * * * * *
7977509 TAGTTGTTACTCGTCATGTTAAAAAATATAATTGTTACATGTTATGTTGAAAAATA
1 TAGTTTTTACACGTCATGTTGAAAAATTTAATTTTTACATGTCATGTTGAAAAATA
*
7977565 TAGTTTTTACATGTCATGTTGAAAAATTTAATTTTTACATGTCATGTTGAAAAATA
1 TAGTTTTTACACGTCATGTTGAAAAATTTAATTTTTACATGTCATGTTGAAAAATA
* *
7977621 TAGTTTTTACACGTCAATGTTGAAAAATTTAATTTTTACATGCCATGATGAAAAA
1 TAGTTTTTACACGTC-ATGTTGAAAAATTTAATTTTTACATGTCATGTTGAAAAA
7977676 GTTGTTACAT
Statistics
Matches: 100, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
56 63 0.63
57 37 0.37
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.41
Consensus pattern (56 bp):
TAGTTTTTACACGTCATGTTGAAAAATTTAATTTTTACATGTCATGTTGAAAAATA
Found at i:7983316 original size:42 final size:42
Alignment explanation
Indices: 7983257--7983340 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
7983247 TTGTGTTTTG
*
7983257 CCACTGGTTTCTTTCTTACTTTGTACAGTGATTTTATGGTTA
1 CCACTGGTTTCTTTCTTACTTTGTACAGTGATTCTATGGTTA
7983299 CCACTGGTTTCTTTCTTACTTTGTACAGTGATTCTATGGTTA
1 CCACTGGTTTCTTTCTTACTTTGTACAGTGATTCTATGGTTA
7983341 AGATAAATGC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.49
Consensus pattern (42 bp):
CCACTGGTTTCTTTCTTACTTTGTACAGTGATTCTATGGTTA
Found at i:8000813 original size:22 final size:23
Alignment explanation
Indices: 8000774--8000821 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
8000764 TTTTATGTAC
*
8000774 TTTACTTGATGACAATTTTATTT
1 TTTACTTGATGACAATTTAATTT
8000797 TTTAC-TGATGATC-ATTTAATTT
1 TTTACTTGATGA-CAATTTAATTT
8000819 TTT
1 TTT
8000822 TCTAAGGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 17 0.74
23 6 0.26
ACGTcount: A:0.25, C:0.08, G:0.08, T:0.58
Consensus pattern (23 bp):
TTTACTTGATGACAATTTAATTT
Found at i:8004385 original size:19 final size:19
Alignment explanation
Indices: 8004363--8004403 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8004353 TATTATTTAA
8004363 TTAA-TTAAATTAAAGAATT
1 TTAACTTAAATTAAA-AATT
*
8004382 TTAACTTAGATTAAAAATT
1 TTAACTTAAATTAAAAATT
8004401 TTA
1 TTA
8004404 TAATTATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (19 bp):
TTAACTTAAATTAAAAATT
Found at i:8004416 original size:21 final size:20
Alignment explanation
Indices: 8004365--8004417 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
8004355 TTATTTAATT
*
8004365 AATTAAATTAAAGAATTTTA
1 AATTAGATTAAAGAATTTTA
*
8004385 ACTTAGATTAAA-AATTTTA
1 AATTAGATTAAAGAATTTTA
8004404 TAATTATGATTAAA
1 -AATTA-GATTAAA
8004418 TCACAACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 7 0.25
20 14 0.50
21 7 0.25
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.42
Consensus pattern (20 bp):
AATTAGATTAAAGAATTTTA
Found at i:8006634 original size:2 final size:2
Alignment explanation
Indices: 8006627--8006665 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
8006617 TCTTGTTAAG
*
8006627 TC TC TC TC TC TC TC TC TC TC TC CC TC TC -C GTC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC -TC TC TC TC T
8006666 TTTTTCGTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 31 0.94
3 1 0.03
ACGTcount: A:0.00, C:0.51, G:0.03, T:0.46
Consensus pattern (2 bp):
TC
Found at i:8014850 original size:25 final size:25
Alignment explanation
Indices: 8014820--8014881 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
8014810 TTAATGTCAC
*
8014820 GTGGCATTGTCATGTTATCATGTTA
1 GTGGCATTGTCATGTTATCATATTA
8014845 GTGGCATTGTCATGTTATCATATTA
1 GTGGCATTGTCATGTTATCATATTA
*
8014870 GTGACA-TGTCAT
1 GTGGCATTGTCAT
8014882 CCCTTTTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 6 0.17
25 29 0.83
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.42
Consensus pattern (25 bp):
GTGGCATTGTCATGTTATCATATTA
Found at i:8029146 original size:10 final size:10
Alignment explanation
Indices: 8029121--8029155 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
8029111 GTTGAAATGG
8029121 AAGAAAAGAGA
1 AAGAAAA-AGA
*
8029132 AAGAAAAAAA
1 AAGAAAAAGA
8029142 AAGAAAAAGA
1 AAGAAAAAGA
8029152 AAGA
1 AAGA
8029156 GAGAAGGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 15 0.68
11 7 0.32
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:8033746 original size:3 final size:3
Alignment explanation
Indices: 8033738--8033771 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
8033728 CGATTAACAG
*
8033738 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
8033772 CCTCTTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:8033791 original size:24 final size:25
Alignment explanation
Indices: 8033749--8033807 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
8033739 TCTTCTTCTT
* * *
8033749 CTTC-TTCTTCTTCTTCTTTTTCTC
1 CTTCTTTCTTCCTCTGCTTTTCCTC
8033773 C-TCTTTCTTCCTCTGCTTTTCCTC
1 CTTCTTTCTTCCTCTGCTTTTCCTC
8033797 CTTTCTTTCTT
1 C-TTCTTTCTT
8033808 TTTCAGAGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 2 0.07
24 19 0.66
26 8 0.28
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.63
Consensus pattern (25 bp):
CTTCTTTCTTCCTCTGCTTTTCCTC
Found at i:8037055 original size:74 final size:75
Alignment explanation
Indices: 8036919--8037078 Score: 182
Period size: 75 Copynumber: 2.1 Consensus size: 75
8036909 TATTGGAGAA
* * *
8036919 TTCTCTTGGTTACTGGTGTTCGCAGCTTCATCAGGGCAATAGCTACATCCGGCGCTACCAA-GGA
1 TTCTCTTGGTTACTAGTGTTCACAGCTTCATCAGGGCAATAGCCACATCCGGCGCTACCAAGGGA
* * *
8036983 GAGAGTAGGG
66 GAGAGGAAGC
* * * * *
8036993 TTCTCTTGGTTATTATTGTTCACAGCTTCATCAGAGTCAGTAGCCACAAT-CTGCGCTA-CAAGG
1 TTCTCTTGGTTACTAGTGTTCACAGCTTCATCAG-GGCAATAGCCAC-ATCCGGCGCTACCAAGG
8037056 GAGAGAGGAAGC
64 GAGAGAGGAAGC
8037068 TTCTCTTGGTT
1 TTCTCTTGGTT
8037079 CTTGCTGTTC
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
74 33 0.46
75 37 0.51
76 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (75 bp):
TTCTCTTGGTTACTAGTGTTCACAGCTTCATCAGGGCAATAGCCACATCCGGCGCTACCAAGGGA
GAGAGGAAGC
Found at i:8037859 original size:27 final size:26
Alignment explanation
Indices: 8037818--8037912 Score: 86
Period size: 27 Copynumber: 3.6 Consensus size: 26
8037808 CTTTCTCTAG
*
8037818 ATAAAACTAAAATTTTAATACAAATT
1 ATAAAATTAAAATTTTAATACAAATT
* *
8037844 ATGAAAATTAATATTTTAAATTTCAAA--
1 AT-AAAATTAAAATTTT-AA-TACAAATT
* *
8037871 ATTAAATTAAAATTTTAATATAAATT
1 ATAAAATTAAAATTTTAATACAAATT
*
8037897 ATAATAATTAATATTT
1 ATAA-AATTAAAATTT
8037913 AAAATTAAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
24 4 0.07
25 2 0.04
26 17 0.31
27 24 0.44
28 2 0.04
29 5 0.09
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (26 bp):
ATAAAATTAAAATTTTAATACAAATT
Found at i:8037961 original size:45 final size:45
Alignment explanation
Indices: 8037868--8037967 Score: 130
Period size: 45 Copynumber: 2.2 Consensus size: 45
8037858 TTTAAATTTC
* * * *
8037868 AAAATTAAATTAAAATTTTAATATAAATTATAATAATTAATATTT
1 AAAATTAAATTAAAATTTTAATATAAATTATAAAAATGAAGATAT
*
8037913 AAAATTAAATTAAAATTTTAATTATAAATTTTAAAAATGAAGA-AT
1 AAAATTAAATTAAAATTTTAA-TATAAATTATAAAAATGAAGATAT
*
8037958 AAAATAAAAT
1 AAAATTAAAT
8037968 AATGGTATTA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
45 31 0.65
46 17 0.35
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (45 bp):
AAAATTAAATTAAAATTTTAATATAAATTATAAAAATGAAGATAT
Found at i:8037996 original size:16 final size:16
Alignment explanation
Indices: 8037975--8038006 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8037965 AATAATGGTA
8037975 TTAATTATAAATTATT
1 TTAATTATAAATTATT
8037991 TTAATTATAAATTATT
1 TTAATTATAAATTATT
8038007 AATATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTAATTATAAATTATT
Found at i:8041779 original size:25 final size:26
Alignment explanation
Indices: 8041740--8041800 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 26
8041730 TATAAATTAG
* *
8041740 GCATCCACTAGGTGAGATG-TTTCCC
1 GCATCCACCAGGTGAAATGTTTTCCC
*
8041765 GCATCCACCATGTGAAATGTTTTCCC
1 GCATCCACCAGGTGAAATGTTTTCCC
8041791 GCATCCACCA
1 GCATCCACCA
8041801 AAAAGAGTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 16 0.50
26 16 0.50
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATCCACCAGGTGAAATGTTTTCCC
Found at i:8046351 original size:29 final size:30
Alignment explanation
Indices: 8046307--8046380 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
8046297 TATTCATTTA
*
8046307 AAAAAAATATTGTTATTACATATAATATT-
1 AAAAAAATATTATTATTACATATAATATTC
* *
8046336 AAAAAAATATTATTATTACATGTCATATTC
1 AAAAAAATATTATTATTACATATAATATTC
* *
8046366 AAAAACATTTTATTA
1 AAAAAAATATTATTA
8046381 CACTTTAATG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 26 0.67
30 13 0.33
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.41
Consensus pattern (30 bp):
AAAAAAATATTATTATTACATATAATATTC
Found at i:8056275 original size:20 final size:21
Alignment explanation
Indices: 8056238--8056277 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8056228 TTAATTTTTT
*
8056238 TATTATATATATAGAAATTAA
1 TATTATATATATAAAAATTAA
*
8056259 TATT-TATATTTAAAAATTA
1 TATTATATATATAAAAATTA
8056278 CTTAAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (21 bp):
TATTATATATATAAAAATTAA
Found at i:8056309 original size:17 final size:16
Alignment explanation
Indices: 8056289--8056349 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
8056279 TTAAATTTAT
8056289 TAATATTTTAATCATAA
1 TAATATTTTAAT-ATAA
*
8056306 TAATATTTTTATATAA
1 TAATATTTTAATATAA
8056322 -ATATATTTTAAT-T-A
1 TA-ATATTTTAATATAA
*
8056336 TTATATTTTAATAT
1 TAATATTTTAATAT
8056350 TAAAATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 11 0.29
15 3 0.08
16 13 0.34
17 11 0.29
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
TAATATTTTAATATAA
Found at i:8066477 original size:15 final size:15
Alignment explanation
Indices: 8066459--8066520 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
8066449 TGAAGAAGTG
8066459 GAGGTAGAAGAAGAA
1 GAGGTAGAAGAAGAA
*
8066474 GAGGAAG-AGATAGAA
1 GAGGTAGAAGA-AGAA
**
8066489 GAGG-AGGTGGAAGAA
1 GAGGTA-GAAGAAGAA
*
8066504 GAGGTTGAAGAAGAA
1 GAGGTAGAAGAAGAA
8066519 GA
1 GA
8066521 TCAAGATAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
14 4 0.11
15 32 0.84
16 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.44, T:0.08
Consensus pattern (15 bp):
GAGGTAGAAGAAGAA
Found at i:8087126 original size:16 final size:16
Alignment explanation
Indices: 8087107--8087140 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8087097 TATGATATAT
* *
8087107 TTTATTACGTTTTTTA
1 TTTATCACGTGTTTTA
8087123 TTTATCACGTGTTTTA
1 TTTATCACGTGTTTTA
8087139 TT
1 TT
8087141 AAATTTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.09, T:0.65
Consensus pattern (16 bp):
TTTATCACGTGTTTTA
Found at i:8088746 original size:15 final size:15
Alignment explanation
Indices: 8088671--8088747 Score: 50
Period size: 16 Copynumber: 4.9 Consensus size: 15
8088661 AAATCATAAG
8088671 TATTTTTAA-AAAAT
1 TATTTTTAATAAAAT
**
8088685 AATATTTTTAATTTTAAT
1 --TATTTTTAA-TAAAAT
* * *
8088703 TGTTTTTAGTGAAAT
1 TATTTTTAATAAAAT
8088718 T-TTTTTAAAATAAAAT
1 TATTTTT--AATAAAAT
8088734 TATTTTTAATAAAA
1 TATTTTTAATAAAA
8088748 CTTTTTCATA
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
14 5 0.10
15 12 0.25
16 23 0.48
17 5 0.10
18 3 0.06
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (15 bp):
TATTTTTAATAAAAT
Found at i:8090216 original size:3 final size:3
Alignment explanation
Indices: 8090208--8090241 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8090198 ACATGTCACT
8090208 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8090242 GCTTTTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8096471 original size:28 final size:29
Alignment explanation
Indices: 8096436--8096517 Score: 96
Period size: 30 Copynumber: 2.8 Consensus size: 29
8096426 TTATTTAAAA
*
8096436 TTATTTAAATAAATTATTAT-TTTTTA-TT
1 TTATTTAAATAAATT-TTATAATTTTATTT
*
8096464 TTATTTAATTAAATCTTTATAATTTTATTT
1 TTATTTAAATAAAT-TTTATAATTTTATTT
*
8096494 TTAATTAAATAAATTTTTATAATT
1 TTATTTAAATAAA-TTTTATAATT
8096518 AATAATTAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
28 17 0.37
29 6 0.13
30 22 0.48
31 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (29 bp):
TTATTTAAATAAATTTTATAATTTTATTT
Found at i:8097262 original size:47 final size:47
Alignment explanation
Indices: 8097193--8097286 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 47
8097183 GTTTAACAAA
* *
8097193 GGCTACTTATTTTATTTCGATGAGTTAATCAATTAAATAAGTATTTT
1 GGCTACTTATTCTATTTCGATGAATTAATCAATTAAATAAGTATTTT
* * * *
8097240 GGCTACTTATTCTATTTTGATGAATTAATTAGTTAAATAATTATTTT
1 GGCTACTTATTCTATTTCGATGAATTAATCAATTAAATAAGTATTTT
8097287 CTGTTTTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.32, C:0.07, G:0.12, T:0.49
Consensus pattern (47 bp):
GGCTACTTATTCTATTTCGATGAATTAATCAATTAAATAAGTATTTT
Found at i:8105941 original size:31 final size:31
Alignment explanation
Indices: 8105896--8105957 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
8105886 TATGAATCAT
* * *
8105896 TATAGACTTGCCATACTTGGCACAAAAGACA
1 TATAGACATACCATACTTGGCAAAAAAGACA
8105927 TATAGACATACCATACTTGGCAAAAAAGACA
1 TATAGACATACCATACTTGGCAAAAAAGACA
8105958 AAGATATACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (31 bp):
TATAGACATACCATACTTGGCAAAAAAGACA
Found at i:8106334 original size:32 final size:31
Alignment explanation
Indices: 8106293--8106356 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 31
8106283 AGAAGAGTTC
* * *
8106293 CACCCTTTTGGGATCACAATGACCATTTTCTT
1 CACCCTTTTGGCATCACAA-AACCACTTTCTT
8106325 CACCCTTTTGGCATCACAAAACCACTTTCTT
1 CACCCTTTTGGCATCACAAAACCACTTTCTT
8106356 C
1 C
8106357 CTGTCACGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 11 0.38
32 18 0.62
ACGTcount: A:0.23, C:0.33, G:0.09, T:0.34
Consensus pattern (31 bp):
CACCCTTTTGGCATCACAAAACCACTTTCTT
Found at i:8106794 original size:14 final size:14
Alignment explanation
Indices: 8106775--8106809 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
8106765 CAAGGCCTCA
8106775 AGTACATCAGCACT
1 AGTACATCAGCACT
8106789 AGTACATCAGCACT
1 AGTACATCAGCACT
8106803 AGTACAT
1 AGTACAT
8106810 GATCTCCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (14 bp):
AGTACATCAGCACT
Found at i:8111712 original size:31 final size:32
Alignment explanation
Indices: 8111652--8111714 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 32
8111642 TAAATATAAG
* *
8111652 TTCTCAACTGTTTAAGGGTATCTGCTTGATGA
1 TTCTCAACTGCTTAAGGATATCTGCTTGATGA
*
8111684 TTCTCAACTGCTT-AGGATATCTGTTTGATGA
1 TTCTCAACTGCTTAAGGATATCTGCTTGATGA
8111715 GTTTCCAGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (32 bp):
TTCTCAACTGCTTAAGGATATCTGCTTGATGA
Found at i:8114844 original size:28 final size:28
Alignment explanation
Indices: 8114771--8114850 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 28
8114761 GAGTTAATAA
* *
8114771 AGAAAAA-CTGTACGTGAATAGTACAAG
1 AGAAAAAGTTGTACGTGAAAAGTACAAG
* **
8114798 AGAAGAAGTTGTATATGAAAAGTACAAG
1 AGAAAAAGTTGTACGTGAAAAGTACAAG
*
8114826 AGAAAAAGTTTTACGTGAACAAGTA
1 AGAAAAAGTTGTACGTGAA-AAGTA
8114851 TAAAAGAACA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
27 6 0.14
28 31 0.74
29 5 0.12
ACGTcount: A:0.49, C:0.07, G:0.23, T:0.21
Consensus pattern (28 bp):
AGAAAAAGTTGTACGTGAAAAGTACAAG
Found at i:8116638 original size:6 final size:7
Alignment explanation
Indices: 8116617--8116648 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
8116607 TGTAAATATA
8116617 TTTCTTT
1 TTTCTTT
8116624 TTTCTTT
1 TTTCTTT
8116631 TTTCTTT
1 TTTCTTT
*
8116638 TTTGTTT
1 TTTCTTT
8116645 TTTC
1 TTTC
8116649 CTTGAAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.84
Consensus pattern (7 bp):
TTTCTTT
Found at i:8118859 original size:39 final size:39
Alignment explanation
Indices: 8118805--8118923 Score: 238
Period size: 39 Copynumber: 3.1 Consensus size: 39
8118795 CAAGAAAAAC
8118805 ACATGAATTGATGCAATTGTGTTTCTCTTCTGTTTACTT
1 ACATGAATTGATGCAATTGTGTTTCTCTTCTGTTTACTT
8118844 ACATGAATTGATGCAATTGTGTTTCTCTTCTGTTTACTT
1 ACATGAATTGATGCAATTGTGTTTCTCTTCTGTTTACTT
8118883 ACATGAATTGATGCAATTGTGTTTCTCTTCTGTTTACTT
1 ACATGAATTGATGCAATTGTGTTTCTCTTCTGTTTACTT
8118922 AC
1 AC
8118924 TATTTCAAAT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.21, C:0.16, G:0.15, T:0.48
Consensus pattern (39 bp):
ACATGAATTGATGCAATTGTGTTTCTCTTCTGTTTACTT
Found at i:8126940 original size:2 final size:2
Alignment explanation
Indices: 8126933--8126960 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8126923 TGCTGAACTA
8126933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8126961 CATAAAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8137386 original size:11 final size:11
Alignment explanation
Indices: 8137370--8137394 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8137360 AGATAGGACC
8137370 TTTCTTTTTCT
1 TTTCTTTTTCT
8137381 TTTCTTTTTCT
1 TTTCTTTTTCT
8137392 TTT
1 TTT
8137395 ATCTCTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTCTTTTTCT
Found at i:8138038 original size:2 final size:2
Alignment explanation
Indices: 8138031--8138058 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8138021 AATTAAAATG
8138031 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8138059 NNNNNNNNNN
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8141940 original size:127 final size:129
Alignment explanation
Indices: 8141707--8141965 Score: 405
Period size: 127 Copynumber: 2.0 Consensus size: 129
8141697 ATGACTAACA
* *
8141707 GGCATCAAAATCAAGATAAAATATGCACAATGAACATGTGCAGACAGGTAAAAAAAAAAGAAAAG
1 GGCATCAAAATCAAGACAAAATATGCACAATGAACATGAGCAGACAGG----AAAAAAAGAAAAG
*
8141772 AAAAGAACAACTGTGAGAAAAAGCCTCTGAATTGCAGGCAAGCCATATAACCTCTATCTATGACA
62 AAAAGAACAACTGTGAGAAAAAGCCTCTGAATTGCAGGCAAGCCATATAAACTCTATCTATGACA
8141837 ATC
127 ATC
* **
8141840 GGCATCAAAATCAAGACAAAATATGCACAATGTACATGAGCAGACAGG-AGGAAA-AAAAGAAAA
1 GGCATCAAAATCAAGACAAAATATGCACAATGAACATGAGCAGACAGGAAAAAAAGAAAAGAAAA
*
8141903 GAACAACTGTGAGAAAAAGCCTCTGAATTGCAGGCAAGCTATATAAACTCTATCTATGACAAT
66 GAACAACTGTGAGAAAAAGCCTCTGAATTGCAGGCAAGCCATATAAACTCTATCTATGACAAT
8141966 TGGCTACATT
Statistics
Matches: 119, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
127 70 0.59
128 4 0.03
133 45 0.38
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.17
Consensus pattern (129 bp):
GGCATCAAAATCAAGACAAAATATGCACAATGAACATGAGCAGACAGGAAAAAAAGAAAAGAAAA
GAACAACTGTGAGAAAAAGCCTCTGAATTGCAGGCAAGCCATATAAACTCTATCTATGACAATC
Found at i:8143388 original size:15 final size:16
Alignment explanation
Indices: 8143358--8143391 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
8143348 TCAACCAGGC
*
8143358 AAAGAAAGATTTTTAA
1 AAAGAAAGAATTTTAA
8143374 AAAGAAA-AATTTTAA
1 AAAGAAAGAATTTTAA
8143389 AAA
1 AAA
8143392 TTTAAGAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (16 bp):
AAAGAAAGAATTTTAA
Found at i:8152571 original size:7 final size:7
Alignment explanation
Indices: 8152559--8152588 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
8152549 ATTCTTATAT
8152559 AGTTTAA
1 AGTTTAA
8152566 AGTTTAA
1 AGTTTAA
8152573 AGTTTAA
1 AGTTTAA
8152580 AGTTTAA
1 AGTTTAA
8152587 AG
1 AG
8152589 AAATTCCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (7 bp):
AGTTTAA
Found at i:8152914 original size:18 final size:18
Alignment explanation
Indices: 8152893--8152930 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8152883 AAACTTATTA
8152893 ATTTTTAAAAAATATTTT
1 ATTTTTAAAAAATATTTT
8152911 ATTTTTAAAAAATATTTT
1 ATTTTTAAAAAATATTTT
8152929 AT
1 AT
8152931 ATTAAACACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTTAAAAAATATTTT
Found at i:8152935 original size:17 final size:18
Alignment explanation
Indices: 8152897--8152936 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
8152887 TTATTAATTT
*
8152897 TTAAAAAATATTTTATTT
1 TTAAAAAATATTTTATTA
8152915 TTAAAAAATATTTTA-TA
1 TTAAAAAATATTTTATTA
8152932 TTAAA
1 TTAAA
8152937 CACCTAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTAAAAAATATTTTATTA
Found at i:8153210 original size:21 final size:20
Alignment explanation
Indices: 8153176--8153216 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8153166 TTTTTTTATT
*
8153176 TTTTTAAAGTATAATAATAA
1 TTTTTAAAGTATAAAAATAA
*
8153196 TTTTTAAATTAATAAAAATAA
1 TTTTTAAAGT-ATAAAAATAA
8153217 AAAATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TTTTTAAAGTATAAAAATAA
Found at i:8155884 original size:32 final size:32
Alignment explanation
Indices: 8155847--8155912 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
8155837 TAATAATATT
*
8155847 AAAATAATAATT-T-TATTTTTTATTAATTTTAA
1 AAAAT-ATAATTATATATTTTATATTAA-TTTAA
*
8155879 AAAATATTATTATATATTTTATATTAATTTAA
1 AAAATATAATTATATATTTTATATTAATTTAA
8155911 AA
1 AA
8155913 TTGCTATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 5 0.17
32 13 0.43
33 12 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (32 bp):
AAAATATAATTATATATTTTATATTAATTTAA
Found at i:8156189 original size:20 final size:20
Alignment explanation
Indices: 8156141--8156189 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
8156131 GTGTTTATAT
8156141 TTTTAAAA-TAAAATATTTA
1 TTTTAAAATTAAAATATTTA
8156160 TTTTAAAATTAATAA-ATTTA
1 TTTTAAAATTAA-AATATTTA
8156180 TTTTAAAATT
1 TTTTAAAATT
8156190 TAATTAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.29
20 18 0.64
21 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTTAAAATTAAAATATTTA
Found at i:8156202 original size:21 final size:20
Alignment explanation
Indices: 8156136--8156202 Score: 59
Period size: 20 Copynumber: 3.3 Consensus size: 20
8156126 TAATAGTGTT
8156136 TATATTTTTAAAA-TAA-AATA
1 TATA-TTTTAAAATTAATAA-A
*
8156156 TTTATTTTAAAATTAATAAA
1 TATATTTTAAAATTAATAAA
*
8156176 TTTATTTTAAAATTTAATTAAA
1 TATATTTTAAAA-TTAA-TAAA
8156198 -ATATT
1 TATATT
8156203 AAAATATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.20
20 19 0.46
21 10 0.24
22 4 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATATTTTAAAATTAATAAA
Found at i:8157013 original size:3 final size:3
Alignment explanation
Indices: 8157005--8157033 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8156995 TTGATTAATG
8157005 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8157034 TCGAGAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Done.