Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397293.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_69.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 418364
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.31
Warning! 40509 characters in sequence are not A, C, G, or T
Found at i:2657 original size:28 final size:28
Alignment explanation
Indices: 2582--2682 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 28
2572 TTTAACATAT
* * *
2582 TTTGTCTTAATTTAGACAAAAAAAACATA
1 TTTGCCTTAATTTAGAC-AAGAAAACATG
* *
2611 TTTTCTCTTAATTTGGACAAGAAAACATG
1 TTTGC-CTTAATTTAGACAAGAAAACATG
2640 TTTGCCTTAATTTAGACAAGAAAACATG
1 TTTGCCTTAATTTAGACAAGAAAACATG
*
2668 TTTTGTCTTAATTTA
1 -TTTGCCTTAATTTA
2683 NNNNNNNNNN
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 22 0.35
29 29 0.47
30 11 0.18
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.40
Consensus pattern (28 bp):
TTTGCCTTAATTTAGACAAGAAAACATG
Found at i:2682 original size:29 final size:29
Alignment explanation
Indices: 2575--2682 Score: 146
Period size: 28 Copynumber: 3.7 Consensus size: 29
2565 TGGCAGTTTT
*
2575 AACATATTTTGTCTTAATTTAGACAAAAAA
1 AACATATTTTGTCTTAATTTAGAC-AAGAA
* *
2605 AACATATTTTCTCTTAATTTGGACAAGAA
1 AACATATTTTGTCTTAATTTAGACAAGAA
* *
2634 AACAT-GTTTGCCTTAATTTAGACAAGAA
1 AACATATTTTGTCTTAATTTAGACAAGAA
*
2662 AACATGTTTTGTCTTAATTTA
1 AACATATTTTGTCTTAATTTA
2683 NNNNNNNNNN
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 24 0.35
29 22 0.32
30 22 0.32
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (29 bp):
AACATATTTTGTCTTAATTTAGACAAGAA
Found at i:4323 original size:18 final size:19
Alignment explanation
Indices: 4300--4339 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
4290 CAAGTAGAGG
4300 ATTTTA-CAATAAAATAAT
1 ATTTTATCAATAAAATAAT
**
4318 ATTTTATTGATAAAATAAT
1 ATTTTATCAATAAAATAAT
4337 ATT
1 ATT
4340 AAAGTATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (19 bp):
ATTTTATCAATAAAATAAT
Found at i:19764 original size:20 final size:23
Alignment explanation
Indices: 19725--19769 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
19715 NNNNTAACTA
19725 TTTATATTTTATGCATTAT-AGT
1 TTTATATTTTATGCATTATAAGT
*
19747 TTTATA-TTTA-GTATTATAAGT
1 TTTATATTTTATGCATTATAAGT
19768 TT
1 TT
19770 AGACAGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 9 0.43
22 6 0.29
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (23 bp):
TTTATATTTTATGCATTATAAGT
Found at i:55596 original size:18 final size:20
Alignment explanation
Indices: 55556--55599 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
55546 TTAATATTTT
*
55556 AATATTATTTTTTTCACAGA
1 AATATTATTTTATTCACAGA
55576 AATATTATTTTATTCA-A-A
1 AATATTATTTTATTCACAGA
55594 AATATT
1 AATATT
55600 CTTTCCGCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 1 0.04
20 15 0.65
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (20 bp):
AATATTATTTTATTCACAGA
Found at i:65486 original size:41 final size:41
Alignment explanation
Indices: 65429--65510 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
65419 CTTGAATGTT
65429 TAGCCACTGCATCAATTGACACAAATCTAGTATGATCAAAC
1 TAGCCACTGCATCAATTGACACAAATCTAGTATGATCAAAC
65470 TAGCCACTGCATCAATTGACACAAATCTAGTATGATCAAAC
1 TAGCCACTGCATCAATTGACACAAATCTAGTATGATCAAAC
65511 GAACCATTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (41 bp):
TAGCCACTGCATCAATTGACACAAATCTAGTATGATCAAAC
Found at i:66745 original size:22 final size:22
Alignment explanation
Indices: 66684--66745 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 22
66674 TTACAAAATA
*
66684 AAAAGAAAATAT--CAATAATT
1 AAAAGAAAATATAAAAATAATT
66704 AATAATGGAATAA-ATAAAAATAATT
1 AA-AA--GAA-AATATAAAAATAATT
66729 AAAAGAAAATATAAAAA
1 AAAAGAAAATATAAAAA
66746 AGTAAGTTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
20 2 0.06
21 4 0.12
22 10 0.29
23 5 0.15
24 4 0.12
25 9 0.26
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (22 bp):
AAAAGAAAATATAAAAATAATT
Found at i:71583 original size:6 final size:6
Alignment explanation
Indices: 71568--71616 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
71558 GATAAAATTG
* * *
71568 AAAA-A AAAATA AAAATG AGAATA AAAATA AAAACA AAAAT- AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
71614 AAA
1 AAA
71617 TGAAATTAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
5 9 0.25
6 27 0.75
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:71593 original size:18 final size:17
Alignment explanation
Indices: 71559--71621 Score: 67
Period size: 17 Copynumber: 3.7 Consensus size: 17
71549 ATAACATAAG
*
71559 ATAAAATTGAAAAAAAA
1 ATAAAAATGAAAAAAAA
*
71576 ATAAAAATGAGAATAAAA
1 ATAAAAATGA-AAAAAAA
*
71594 ATAAAAA-CAAAAATAAA
1 ATAAAAATGAAAAA-AAA
71611 AT-AAAATGAAA
1 ATAAAAATGAAA
71622 TTAATGTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 7 0.18
17 18 0.47
18 13 0.34
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (17 bp):
ATAAAAATGAAAAAAAA
Found at i:71931 original size:51 final size:51
Alignment explanation
Indices: 71851--71947 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 51
71841 AATAAACAAC
* * *
71851 TCCTCATTAGAGGTTTTACAACTTGAAAAGTGATTTGGGAAAATGAGTAAT
1 TCCTCATTAGAAGCTTTACAACTTGAAAAGTGATTTGGAAAAATGAGTAAT
* *
71902 TCCTCATTCGAAGCTTTACAACTTTAAAAGTGATTTGGAAAAATGA
1 TCCTCATTAGAAGCTTTACAACTTGAAAAGTGATTTGGAAAAATGA
71948 ACAACTCCTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (51 bp):
TCCTCATTAGAAGCTTTACAACTTGAAAAGTGATTTGGAAAAATGAGTAAT
Found at i:71957 original size:51 final size:51
Alignment explanation
Indices: 71845--72086 Score: 205
Period size: 52 Copynumber: 4.7 Consensus size: 51
71835 CAAGTTAATA
* * * *
71845 AACAACTCCTCATTAGAGGTTTTACAACTTGAAAAGTGATTTGGGAAAATG
1 AACAACTCCTCATTCGAGGCTTTACAACTTTAAAAGTGATTTGGAAAAATG
** * *
71896 AGTAATTCCTCATTCGAAGCTTTACAACTTTAAAAGTGATTTGGAAAAATG
1 AACAACTCCTCATTCGAGGCTTTACAACTTTAAAAGTGATTTGGAAAAATG
*** ** * *
71947 AACAACTCCTCGCCCGAGGCTTTAGTACTTTAAAAAGTGTTTTGGAAAAATT
1 AACAACTCCTCATTCGAGGCTTTACAACTTT-AAAAGTGATTTGGAAAAATG
* * * * * * * **
71999 AAAAACCCCTCATCCAACGCTTTACAGCTTTAAAACTTGATTTGGAAAAACA
1 AACAACTCCTCATTCGAGGCTTTACAACTTTAAAA-GTGATTTGGAAAAATG
* * * * *
72051 AACAACTCTTGATCCGAGGTTTTACAAGTTTAAAAG
1 AACAACTCCTCATTCGAGGCTTTACAACTTTAAAAG
72087 CGAAAATTCC
Statistics
Matches: 147, Mismatches: 42, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
51 69 0.47
52 78 0.53
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30
Consensus pattern (51 bp):
AACAACTCCTCATTCGAGGCTTTACAACTTTAAAAGTGATTTGGAAAAATG
Found at i:72086 original size:103 final size:102
Alignment explanation
Indices: 71860--72086 Score: 233
Period size: 103 Copynumber: 2.2 Consensus size: 102
71850 CTCCTCATTA
* * ** ** *
71860 GAGGTTTTACAACTTGAAAAGTGATTTGGGAAAATGAGTAATTCCTCATTCGAAGCTTTACAACT
1 GAGGTTTTACAACTTTAAAAGTGATTTGGAAAAATGAAAAACCCCTCATTCCAAGCTTTACAACT
**
71925 TTAAAAGTGATTTGGAAAAATGAACAACTCCTCGCCC
66 TTAAAAGTGATTTGGAAAAACAAACAACTCCTCGCCC
* ** * * *
71962 GAGGCTTTAGTACTTTAAAAAGTGTTTTGGAAAAATTAAAAACCCCTCA-TCCAACGCTTTACAG
1 GAGGTTTTACAACTTT-AAAAGTGATTTGGAAAAATGAAAAACCCCTCATTCCAA-GCTTTACAA
* * *
72026 CTTTAAAACTTGATTTGGAAAAACAAACAACT-CTTGATCC
64 CTTTAAAA-GTGATTTGGAAAAACAAACAACTCCTCG-CCC
*
72066 GAGGTTTTACAAGTTTAAAAG
1 GAGGTTTTACAACTTTAAAAG
72087 CGAAAATTCC
Statistics
Matches: 99, Mismatches: 22, Indels: 7
0.77 0.17 0.05
Matches are distributed among these distances:
102 16 0.16
103 49 0.49
104 34 0.34
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (102 bp):
GAGGTTTTACAACTTTAAAAGTGATTTGGAAAAATGAAAAACCCCTCATTCCAAGCTTTACAACT
TTAAAAGTGATTTGGAAAAACAAACAACTCCTCGCCC
Found at i:72222 original size:89 final size:87
Alignment explanation
Indices: 72000--72230 Score: 255
Period size: 89 Copynumber: 2.6 Consensus size: 87
71990 GGAAAAATTA
* * * * * * *
72000 AAAACCCCTCATCCAACGCTTTACAGCTTTAAAACTTGATTTGGAAAAACAAACAACTCTTGATC
1 AAAACTCCTCATCCGACGCTTTACAACTTTAAAA--TGATTTGGAAAGATAAAAAACTCTTCATC
* * *
72065 CGAGGTTTTACAAGTTTAAAAGCG
64 CAAGGTTTTACAACTTTAAAAACG
* * *
72089 AAAATTCCTCATCCGATGCTTTACAACTTTAACAATAGACTTGGAAAGATAAAAAACTCTTCATC
1 AAAACTCCTCATCCGACGCTTTACAACTTTAA-AAT-GATTTGGAAAGATAAAAAACTCTTCATC
*
72154 CAAGGTTTTACAACTTTAAAAAATG
64 CAAGGTTTTACAACTTT-AAAAACG
* * *
72179 AAGACTCCTCATCCGAGGCTTTACAACTTTAAAAGTGGTTTGGAAAGATAAA
1 AAAACTCCTCATCCGACGCTTTACAACTTTAAAA-TGATTTGGAAAGATAAA
72231 TATGGTTCAT
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
88 1 0.01
89 81 0.68
90 37 0.31
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (87 bp):
AAAACTCCTCATCCGACGCTTTACAACTTTAAAATGATTTGGAAAGATAAAAAACTCTTCATCCA
AGGTTTTACAACTTTAAAAACG
Found at i:88409 original size:5 final size:5
Alignment explanation
Indices: 88399--88426 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
88389 GATTCTCATC
88399 TTTCA TTTCA TTTCA TTTCA TTTCA TTT
1 TTTCA TTTCA TTTCA TTTCA TTTCA TTT
88427 TTTAAGAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTCA
Found at i:104952 original size:67 final size:67
Alignment explanation
Indices: 104831--104973 Score: 178
Period size: 67 Copynumber: 2.1 Consensus size: 67
104821 TCCGGATGAT
* * *** *
104831 GATTATGATGCCACTTGTGGAGAATACTCCAAGTGATGTCGTTTGTTGGAATATTGCCTAGGACA
1 GATTATGATGCCACCTGTGGAGAATACTCCAAGTGATGTAGTCCATTGGAATATTGCCCAGGACA
104896 AG
66 AG
* * * * *
104898 GATTATGATGCCACCTGTGGAGAATACTTCGAGTGATGTAGTCCATTGGGATATTGCCCAGTACG
1 GATTATGATGCCACCTGTGGAGAATACTCCAAGTGATGTAGTCCATTGGAATATTGCCCAGGACA
104963 AG
66 AG
*
104965 GATTGTGAT
1 GATTATGAT
104974 ACCGTCCGTG
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (67 bp):
GATTATGATGCCACCTGTGGAGAATACTCCAAGTGATGTAGTCCATTGGAATATTGCCCAGGACA
AG
Found at i:106997 original size:22 final size:22
Alignment explanation
Indices: 106972--107013 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
106962 ACTTAAACAA
* *
106972 AAAATATTGGTGGTTTGAAATC
1 AAAATAATGATGGTTTGAAATC
*
106994 AAAATAATGATGTTTTGAAA
1 AAAATAATGATGGTTTGAAA
107014 AAGTAACAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (22 bp):
AAAATAATGATGGTTTGAAATC
Found at i:116136 original size:22 final size:22
Alignment explanation
Indices: 116084--116183 Score: 82
Period size: 22 Copynumber: 4.7 Consensus size: 22
116074 ATTGGACGAA
* *
116084 ATGTATTGATATAT-TGTATG-
1 ATGTATTGATACATGTTTATGC
* * *
116104 ATATATAGATACATGTTTGTGC
1 ATGTATTGATACATGTTTATGC
* *
116126 ATGTATTGATATAT-TGTATG-
1 ATGTATTGATACATGTTTATGC
* * *
116146 ATATATAGATACATGTTTTTGC
1 ATGTATTGATACATGTTTATGC
116168 ATGTATTGATACATGT
1 ATGTATTGATACATGT
116184 AATCACATGA
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
20 22 0.37
21 12 0.20
22 25 0.42
ACGTcount: A:0.31, C:0.05, G:0.18, T:0.46
Consensus pattern (22 bp):
ATGTATTGATACATGTTTATGC
Found at i:116143 original size:42 final size:42
Alignment explanation
Indices: 116084--116178 Score: 181
Period size: 42 Copynumber: 2.3 Consensus size: 42
116074 ATTGGACGAA
116084 ATGTATTGATATATTGTATGATATATAGATACATGTTTGTGC
1 ATGTATTGATATATTGTATGATATATAGATACATGTTTGTGC
*
116126 ATGTATTGATATATTGTATGATATATAGATACATGTTTTTGC
1 ATGTATTGATATATTGTATGATATATAGATACATGTTTGTGC
116168 ATGTATTGATA
1 ATGTATTGATA
116179 CATGTAATCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.32, C:0.04, G:0.18, T:0.46
Consensus pattern (42 bp):
ATGTATTGATATATTGTATGATATATAGATACATGTTTGTGC
Found at i:124184 original size:25 final size:29
Alignment explanation
Indices: 124150--124207 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
124140 ATTTTAGCTG
*
124150 ATTTAGGATT-TATT-TTCT-TTATTTTT
1 ATTTAGGATTAAATTCTTCTCTTATTTTT
124176 ATTTA-GATTGAAATTCTTCTCTTATTTTT
1 ATTTAGGATT-AAATTCTTCTCTTATTTTT
124205 ATT
1 ATT
124208 AAAATTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 4 0.15
26 5 0.19
27 3 0.11
28 4 0.15
29 11 0.41
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.64
Consensus pattern (29 bp):
ATTTAGGATTAAATTCTTCTCTTATTTTT
Found at i:130228 original size:2 final size:2
Alignment explanation
Indices: 130221--130246 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
130211 CCAAAAGAAA
130221 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
130247 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:130359 original size:10 final size:10
Alignment explanation
Indices: 130340--130404 Score: 66
Period size: 10 Copynumber: 6.9 Consensus size: 10
130330 GTTGTACTAA
*
130340 TATATGTATG
1 TATATATATG
130350 TATATATATG
1 TATATATATG
130360 --TATATATG
1 TATATATATG
*
130368 TATTTATATG
1 TATATATATG
*
130378 CATATATA--
1 TATATATATG
130386 TATATATATG
1 TATATATATG
*
130396 TATTTATAT
1 TATATATAT
130405 ATTATTTTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
8 15 0.33
10 30 0.67
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.52
Consensus pattern (10 bp):
TATATATATG
Found at i:130377 original size:28 final size:28
Alignment explanation
Indices: 130346--130404 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
130336 CTAATATATG
* *
130346 TATGTATATATATGTATATATGTATTTA
1 TATGCATATATATATATATATGTATTTA
130374 TATGCATATATATATATATATGTATTTA
1 TATGCATATATATATATATATGTATTTA
130402 TAT
1 TAT
130405 ATTATTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (28 bp):
TATGCATATATATATATATATGTATTTA
Found at i:130388 original size:4 final size:4
Alignment explanation
Indices: 130339--130406 Score: 55
Period size: 4 Copynumber: 17.0 Consensus size: 4
130329 TGTTGTACTA
* * * * * **
130339 ATAT ATGT ATGT ATAT ATAT GTAT ATAT GTAT TTAT ATGC ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* *
130387 ATAT ATAT GTAT TTAT ATAT
1 ATAT ATAT ATAT ATAT ATAT
130407 TATTTTATGA
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.51
Consensus pattern (4 bp):
ATAT
Found at i:130403 original size:18 final size:18
Alignment explanation
Indices: 130350--130406 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 18
130340 TATATGTATG
*
130350 TATATATATGTATATATG
1 TATATATATGTATATATA
* *
130368 TATTTATATGCATATATA
1 TATATATATGTATATATA
*
130386 TATATATATGTATTTATA
1 TATATATATGTATATATA
130404 TAT
1 TAT
130407 TATTTTATGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.53
Consensus pattern (18 bp):
TATATATATGTATATATA
Found at i:130414 original size:12 final size:12
Alignment explanation
Indices: 130339--130411 Score: 62
Period size: 12 Copynumber: 6.0 Consensus size: 12
130329 TGTTGTACTA
*
130339 ATATATGTATGT
1 ATATATGTATTT
*
130351 ATATA--TATGT
1 ATATATGTATTT
130361 ATATATGTATTT
1 ATATATGTATTT
*
130373 ATATGCATATATATAT
1 ATAT--ATGTAT-T-T
130389 ATATATGTATTT
1 ATATATGTATTT
130401 ATATAT-TATTT
1 ATATATGTATTT
130412 TATGACCCAA
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
10 10 0.19
11 5 0.10
12 20 0.38
13 1 0.02
14 10 0.19
15 1 0.02
16 5 0.10
ACGTcount: A:0.37, C:0.01, G:0.08, T:0.53
Consensus pattern (12 bp):
ATATATGTATTT
Found at i:140510 original size:15 final size:16
Alignment explanation
Indices: 140492--140522 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
140482 TGGCAAAGCA
140492 GATTTTT-GCAAAATC
1 GATTTTTAGCAAAATC
140507 GATTTTTAGCAAAATC
1 GATTTTTAGCAAAATC
140523 ACACCAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (16 bp):
GATTTTTAGCAAAATC
Found at i:141371 original size:36 final size:36
Alignment explanation
Indices: 141291--141498 Score: 173
Period size: 36 Copynumber: 6.0 Consensus size: 36
141281 AATTTAATTT
*
141291 ATTAGGCCCAATAACTTAATTAAACAA-TTTAATTA
1 ATTAGGCCCAATAACTTAATTAAACAATTTTAATCA
* * * * *
141326 ATGAAGCCCAACAATTTAATTGAACAATTTTAATCA
1 ATTAGGCCCAATAACTTAATTAAACAATTTTAATCA
* * *
141362 ATTAGGCCCAATGACTTAATTAAATACTTTTAATCA
1 ATTAGGCCCAATAACTTAATTAAACAATTTTAATCA
* * * * *
141398 ATTATGCCCAGTGACTTAATTAAACGA-TTTAATTA
1 ATTAGGCCCAATAACTTAATTAAACAATTTTAATCA
** *
141433 ATTAGG-TGAA-AA-TTAATTAAACAA-TTTAATTA
1 ATTAGGCCCAATAACTTAATTAAACAATTTTAATCA
** *
141465 ATTAGGTGC---AACTGAATTAAACAATTTTAATCA
1 ATTAGGCCCAATAACTTAATTAAACAATTTTAATCA
141498 A
1 A
141499 GTGTTTGAGA
Statistics
Matches: 139, Mismatches: 30, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
31 2 0.01
32 36 0.26
33 9 0.06
34 1 0.01
35 34 0.24
36 57 0.41
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (36 bp):
ATTAGGCCCAATAACTTAATTAAACAATTTTAATCA
Found at i:141429 original size:71 final size:70
Alignment explanation
Indices: 141281--141462 Score: 181
Period size: 71 Copynumber: 2.6 Consensus size: 70
141271 TTAAATGTTT
* * *
141281 AATTTAATTTATTAGGCCCAATAACTTAATTAAACAATTTAATTAATGAAGCCCAACAATTTAAT
1 AATTTAATTAATTAGGCCCAATAACTTAATTAAACAATTTAATCAATGAAGCCCAACAACTTAAT
*
141346 TGAAC
66 TAAAC
* * * * * * ***
141351 AATTTTAATCAATTAGGCCCAATGACTTAATTAAATACTTTTAATCAATTATGCCCAGTGACTTA
1 AA-TTTAATTAATTAGGCCCAATAACTTAATTAAACA-ATTTAATCAATGAAGCCCAACAACTTA
141416 ATTAAAC
64 ATTAAAC
* **
141423 GATTTAATTAATTAGG-TGAA-AA-TTAATTAAACAATTTAAT
1 AATTTAATTAATTAGGCCCAATAACTTAATTAAACAATTTAAT
141463 TAATTAGGTG
Statistics
Matches: 90, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
67 6 0.07
68 10 0.11
69 1 0.01
70 4 0.04
71 43 0.48
72 26 0.29
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (70 bp):
AATTTAATTAATTAGGCCCAATAACTTAATTAAACAATTTAATCAATGAAGCCCAACAACTTAAT
TAAAC
Found at i:141454 original size:32 final size:32
Alignment explanation
Indices: 141413--141491 Score: 122
Period size: 32 Copynumber: 2.5 Consensus size: 32
141403 GCCCAGTGAC
*
141413 TTAATTAAACGATTTAATTAATTAGGTGAAAA
1 TTAATTAAACAATTTAATTAATTAGGTGAAAA
* *
141445 TTAATTAAACAATTTAATTAATTAGGTGCAAC
1 TTAATTAAACAATTTAATTAATTAGGTGAAAA
*
141477 TGAATTAAACAATTT
1 TTAATTAAACAATTT
141492 TAATCAAGTG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (32 bp):
TTAATTAAACAATTTAATTAATTAGGTGAAAA
Found at i:154407 original size:68 final size:68
Alignment explanation
Indices: 154291--154550 Score: 252
Period size: 68 Copynumber: 3.8 Consensus size: 68
154281 CTTGTTTGGT
* * * * *
154291 ATGATAAATGCCATAAGATTATATATATGATGTAGA-TTCTATAAACCATATGAGATGATTAAGT
1 ATGATGAATACCATAAGATTATGTATATGATGTATATTTC-ATATACCATATGAGATGATTAAGT
154355 ATGC
65 ATGC
** * * * * * *
154359 ATGATGAATAATATAAGATTGTGTAAATGATGTAAATTTCATATACCATGTGAGGTGATTAACTA
1 ATGATGAATACCATAAGATTATGTATATGATGTATATTTCATATACCATATGAGATGATTAAGTA
154424 TGC
66 TGC
* * * * * * * * * * *
154427 ATGATGCATGCCATGAGATTATGTGTATGATGTATGTTCCATATACTACATGTGATGATTGAGAA
1 ATGATGAATACCATAAGATTATGTATATGATGTATATTTCATATACCATATGAGATGATTAAGTA
154492 TGC
66 TGC
* * * *
154495 ATGATGAATACCATGAGATTATGTATATGATGTATTTTTCATATAACTTATGAGAT
1 ATGATGAATACCATAAGATTATGTATATGATGTATATTTCATATACCATATGAGAT
154551 AAGTAAGCAT
Statistics
Matches: 150, Mismatches: 41, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
68 147 0.98
69 3 0.02
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (68 bp):
ATGATGAATACCATAAGATTATGTATATGATGTATATTTCATATACCATATGAGATGATTAAGTA
TGC
Found at i:156027 original size:32 final size:32
Alignment explanation
Indices: 155986--156054 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
155976 ATTCACTAGA
*
155986 TGCATTTATTGTCATAAAGAAGGACATATTAT
1 TGCATTTATTGTCATAAAAAAGGACATATTAT
156018 TGCATTTATTGTCATAAAAAAGGACATATTAT
1 TGCATTTATTGTCATAAAAAAGGACATATTAT
156050 T-CATT
1 TGCATT
156055 CTTGTCCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 4 0.11
32 32 0.89
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (32 bp):
TGCATTTATTGTCATAAAAAAGGACATATTAT
Found at i:161291 original size:28 final size:28
Alignment explanation
Indices: 161258--161311 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
161248 TGTTACAAAC
161258 AAATAAATTACACCAAACATAAATAAGT
1 AAATAAATTACACCAAACATAAATAAGT
*
161286 AAATAAATTACACTAAACATAAATAA
1 AAATAAATTACACCAAACATAAATAA
161312 AGTTTCAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.63, C:0.13, G:0.02, T:0.22
Consensus pattern (28 bp):
AAATAAATTACACCAAACATAAATAAGT
Found at i:162352 original size:29 final size:29
Alignment explanation
Indices: 162315--162399 Score: 116
Period size: 29 Copynumber: 2.9 Consensus size: 29
162305 AGATCGAGCA
* * *
162315 ACAACGAAGTTCGTGATCAAGATTGAGTG
1 ACAATGAAGTTCGTGATCAAGATTAAGCG
* * *
162344 GCATTGAAGTTCGTGATCAAGATCAAGCG
1 ACAATGAAGTTCGTGATCAAGATTAAGCG
162373 ACAATGAAGTTCGTGATCAAGATTAAG
1 ACAATGAAGTTCGTGATCAAGATTAAG
162400 TCGTAAAGAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25
Consensus pattern (29 bp):
ACAATGAAGTTCGTGATCAAGATTAAGCG
Found at i:170125 original size:71 final size:67
Alignment explanation
Indices: 170026--170293 Score: 277
Period size: 62 Copynumber: 4.1 Consensus size: 67
170016 AACTACATCC
* * * *
170026 AAAAAGAAACAAAAATCTTGCTAGGTTGAAAATCCTTAACAGGATAACTTAGGCAAAAGTTAAGG
1 AAAAAGAAA-AAAAAGCTTGCTAAGTTGAAAATCCTTAACAGGACAACTTAAGCAAAAGTTAAGG
170091 CAAAAA
65 C---AA
* *
170097 AAAAAGAAAAAGAAAGCTTGTTAAGTTGAAAATCCTTAACAGGACAACTTAAGCAAAAGTTAAAG
1 AAAAAGAAAAA-AAAGCTTGCTAAGTTGAAAATCCTTAACAGGACAACTTAAGCAAAAGTTAAGG
170162 C--
65 CAA
* * * * *
170163 -AAAA-AAAAAAAAGCCTACTGAGTT-AAAATCCTTAACAGGACGACTTAGGCAAAAGTTAAGGC
1 AAAAAGAAAAAAAAGCTTGCTAAGTTGAAAATCCTTAACAGGACAACTTAAGCAAAAGTTAAGGC
170225 -A
66 AA
* * * **
170226 CAAAAG----AAAAGCGTACTAAGTTGAAAATCCTTAACAGGATGACTTAAGCAAAAGTTAAGGC
1 AAAAAGAAAAAAAAGCTTGCTAAGTTGAAAATCCTTAACAGGACAACTTAAGCAAAAGTTAAGGC
170287 AA
66 AA
170289 AAAAA
1 AAAAA
170294 AATGAACTAC
Statistics
Matches: 173, Mismatches: 18, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
61 14 0.08
62 71 0.41
63 16 0.09
64 9 0.05
65 4 0.02
70 2 0.01
71 57 0.33
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (67 bp):
AAAAAGAAAAAAAAGCTTGCTAAGTTGAAAATCCTTAACAGGACAACTTAAGCAAAAGTTAAGGC
AA
Found at i:171801 original size:15 final size:15
Alignment explanation
Indices: 171781--171848 Score: 72
Period size: 15 Copynumber: 4.7 Consensus size: 15
171771 CAAACCTTTA
171781 AGAAAGGAAGAAAGG
1 AGAAAGGAAGAAAGG
*
171796 AGAAAGGAAGAAAGA
1 AGAAAGGAAGAAAGG
*
171811 AGAAA-GAAGAAAAG
1 AGAAAGGAAGAAAGG
*
171825 AGATAGG-AG-AAGG
1 AGAAAGGAAGAAAGG
171838 AAGAAA-GAAGA
1 -AGAAAGGAAGA
171849 TAAGCAAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
13 4 0.09
14 19 0.44
15 20 0.47
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.01
Consensus pattern (15 bp):
AGAAAGGAAGAAAGG
Found at i:171847 original size:7 final size:7
Alignment explanation
Indices: 171780--171848 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
171770 CCAAACCTTT
171780 AAGAAAGG
1 AAGAAA-G
171788 AAGAAAG
1 AAGAAAG
*
171795 GAGAAAGG
1 AAGAAA-G
171803 AAGAAAG
1 AAGAAAG
171810 AAGAAAG
1 AAGAAAG
171817 AAGAAA-
1 AAGAAAG
*
171823 AGAGATAG
1 A-AGAAAG
* *
171831 GAGAAGG
1 AAGAAAG
171838 AAGAAAG
1 AAGAAAG
171845 AAGA
1 AAGA
171849 TAAGCAAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
6 1 0.02
7 37 0.74
8 12 0.24
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.01
Consensus pattern (7 bp):
AAGAAAG
Found at i:177336 original size:36 final size:38
Alignment explanation
Indices: 177270--177518 Score: 144
Period size: 36 Copynumber: 6.6 Consensus size: 38
177260 TTCTAAATTG
177270 TGTGCTATTATAAAGAGCA-CCTCCCAAGGATTAA-AAA
1 TGTGCTATTATAAAGAGCACCCTCCCAAGGA-TAATAAA
*
177307 -GTGCTATTATAAAGAGCACCCT-CCGAGGATAATAAA
1 TGTGCTATTATAAAGAGCACCCTCCCAAGGATAATAAA
* ** * *
177343 TTGTGTGCTATTTTAAAGAGCACCCT-TAAAGAATCAA-CAA
1 ---TGTGCTATTATAAAGAGCACCCTCCCAAGGAT-AATAAA
* * * **
177383 -CTGCTATTGTAAAGATCACCCT-TTAAGGATAATAAA
1 TGTGCTATTATAAAGAGCACCCTCCCAAGGATAATAAA
* * *
177419 TGGTGTGCTATTTTAAAAAGCAACC-CCCAAGGATCAAT-AA
1 ---TGTGCTATTATAAAGAGCACCCTCCCAAGGAT-AATAAA
* * * *
177459 -GTTCTATTATAAAGAGCACCCTCCTAA-GAAAACAAA
1 TGTGCTATTATAAAGAGCACCCTCCCAAGGATAATAAA
177495 TTGTGTGCTATTATAAAGAGCACC
1 ---TGTGCTATTATAAAGAGCACC
177519 ACTTTAAATT
Statistics
Matches: 164, Mismatches: 28, Indels: 37
0.72 0.12 0.16
Matches are distributed among these distances:
35 7 0.04
36 75 0.46
37 7 0.04
40 70 0.43
41 5 0.03
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (38 bp):
TGTGCTATTATAAAGAGCACCCTCCCAAGGATAATAAA
Found at i:177389 original size:76 final size:76
Alignment explanation
Indices: 177263--177518 Score: 293
Period size: 76 Copynumber: 3.4 Consensus size: 76
177253 ATGGTGATTC
*
177263 TAAATTGTGTGCTATTATAAAGAGCA-CCTCCCAAGGATTAAAAAGTGCTATTATAAAGAGCACC
1 TAAATTGTGTGCTATTATAAAGAGCACCCT-CCAAGGATCAAAAAGTGCTATTATAAAGAGCACC
*
177327 CTCCGAGGATAA
65 CTCCAAGGATAA
* ** * * * * *
177339 TAAATTGTGTGCTATTTTAAAGAGCACCCTTAAAGAATCAACAACTGCTATTGTAAAGATCACCC
1 TAAATTGTGTGCTATTATAAAGAGCACCCTCCAAGGATCAAAAAGTGCTATTATAAAGAGCACCC
**
177404 TTTAAGGATAA
66 TCCAAGGATAA
* * * * *
177415 TAAATGGTGTGCTATTTTAAAAAGCAACCC-CCAAGGATCAATAAGTTCTATTATAAAGAGCACC
1 TAAATTGTGTGCTATTATAAAGAGC-ACCCTCCAAGGATCAAAAAGTGCTATTATAAAGAGCACC
*
177479 CTCCTAA-GAAAA
65 CTCC-AAGGATAA
*
177491 CAAATTGTGTGCTATTATAAAGAGCACC
1 TAAATTGTGTGCTATTATAAAGAGCACC
177519 ACTTTAAATT
Statistics
Matches: 148, Mismatches: 29, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
75 3 0.02
76 136 0.92
77 9 0.06
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (76 bp):
TAAATTGTGTGCTATTATAAAGAGCACCCTCCAAGGATCAAAAAGTGCTATTATAAAGAGCACCC
TCCAAGGATAA
Found at i:185394 original size:28 final size:28
Alignment explanation
Indices: 185362--185460 Score: 117
Period size: 28 Copynumber: 3.4 Consensus size: 28
185352 TGTAATACTA
185362 ATTGCAACATACTTCTTCAAATAGTTTT
1 ATTGCAACATACTTCTTCAAATAGTTTT
* *
185390 ATTGCAATATACTTCTTTTAAGATTATAGTTTT
1 ATTGCAACATACTTC--TTCA-A--ATAGTTTT
* *
185423 ATTGCAATATCCTTCTTCAAATAGTTTT
1 ATTGCAACATACTTCTTCAAATAGTTTT
185451 ATTGCAACAT
1 ATTGCAACAT
185461 NNNNNNNNNN
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
28 31 0.51
30 4 0.07
31 4 0.07
33 22 0.36
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.45
Consensus pattern (28 bp):
ATTGCAACATACTTCTTCAAATAGTTTT
Found at i:192800 original size:12 final size:12
Alignment explanation
Indices: 192785--192823 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
192775 TAAATATAAA
*
192785 AATAATATATAT
1 AATATTATATAT
192797 AATATTATATAT
1 AATATTATATAT
192809 -AT-TTATATAT
1 AATATTATATAT
192819 AATAT
1 AATAT
192824 CAATTTGGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 8 0.33
11 4 0.17
12 12 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
AATATTATATAT
Found at i:196344 original size:22 final size:22
Alignment explanation
Indices: 196313--196355 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
196303 CATTTTTTCT
196313 TTTAAAATTTAATAAACTTCAC
1 TTTAAAATTTAATAAACTTCAC
* *
196335 TTTAATATTTAATAAATTTCA
1 TTTAAAATTTAATAAACTTCA
196356 ATATCTGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (22 bp):
TTTAAAATTTAATAAACTTCAC
Found at i:211564 original size:30 final size:30
Alignment explanation
Indices: 211512--211568 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
211502 AGTAGTGGTT
* * *
211512 AAAGGTTTTATCTTAACATTGAAAAGAAAG
1 AAAGATTTAATCTAAACATTGAAAAGAAAG
*
211542 AAAGATTTAATCTAAACCTTGAAAAGA
1 AAAGATTTAATCTAAACATTGAAAAGA
211569 TAAAGAGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.28
Consensus pattern (30 bp):
AAAGATTTAATCTAAACATTGAAAAGAAAG
Found at i:211617 original size:30 final size:30
Alignment explanation
Indices: 211558--211668 Score: 118
Period size: 30 Copynumber: 3.7 Consensus size: 30
211548 TTAATCTAAA
* *
211558 CCTTGAAAAGATAAAGA-GTTTTGTTTAAG
1 CCTTGAAAAGATAAAGAGGTTTTATATAAG
* *
211587 CCTTTAAAAGATAAAGAGGTTTTATGTAAG
1 CCTTGAAAAGATAAAGAGGTTTTATATAAG
* ** *
211617 CCTTGAAAAGATTAAAAAGGTCCTATATATG
1 CCTTGAAAAGA-TAAAGAGGTTTTATATAAG
211648 CCTT-AAAATGATAAAGAGGTT
1 CCTTGAAAA-GATAAAGAGGTT
211669 ATACCTTTGC
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
29 16 0.24
30 32 0.47
31 20 0.29
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.32
Consensus pattern (30 bp):
CCTTGAAAAGATAAAGAGGTTTTATATAAG
Found at i:213373 original size:60 final size:60
Alignment explanation
Indices: 213263--213424 Score: 201
Period size: 60 Copynumber: 2.8 Consensus size: 60
213253 TCTTGTCTTT
* * * * *
213263 AATTAAGACAACA-ATATTTTATCTTGT-TTAAATTGAGACAAATATGTTTTCTTATCTA
1 AATTAAGACAAAACATATTTTTTCTTGTCTTAAATTAAGACAAACATATTTTCTTATCTA
* *
213321 GATTAAGACAAAACATATTTTTTCTTGTCTTAAATTAAGACAAACATATTTTCTTGTCTA
1 AATTAAGACAAAACATATTTTTTCTTGTCTTAAATTAAGACAAACATATTTTCTTATCTA
*
213381 AATTAAGATC-AAAC--ATGTTTTCTTGTC-TAAATTAAGACAAACAT
1 AATTAAGA-CAAAACATATTTTTTCTTGTCTTAAATTAAGACAAACAT
213425 GTTAAAGCTA
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
57 17 0.18
58 23 0.25
59 13 0.14
60 38 0.41
61 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (60 bp):
AATTAAGACAAAACATATTTTTTCTTGTCTTAAATTAAGACAAACATATTTTCTTATCTA
Found at i:213379 original size:29 final size:28
Alignment explanation
Indices: 213252--213424 Score: 186
Period size: 29 Copynumber: 5.9 Consensus size: 28
213242 TTTCAGACAA
*
213252 TTCTTGTCTTTAATTAAGAC-AACAATATTT
1 TTCTTGTC-TAAATTAAGACAAAC-ATA-TT
* * * *
213282 TATCTTGTTTAAATTGAGACAAATATGTT
1 T-TCTTGTCTAAATTAAGACAAACATATT
* *
213311 TTCTTATCTAGATTAAGACAAAACATATTTT
1 TTCTTGTCTAAATTAAGAC-AAACATA--TT
213342 TTCTTGTCTTAAATTAAGACAAACATATT
1 TTCTTGTC-TAAATTAAGACAAACATATT
*
213371 TTCTTGTCTAAATTAAGATCAAACATGTT
1 TTCTTGTCTAAATTAAGA-CAAACATATT
213400 TTCTTGTCTAAATTAAGACAAACAT
1 TTCTTGTCTAAATTAAGACAAACAT
213425 GTTAAAGCTA
Statistics
Matches: 122, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
28 31 0.25
29 45 0.37
30 12 0.10
31 24 0.20
32 10 0.08
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (28 bp):
TTCTTGTCTAAATTAAGACAAACATATT
Found at i:215995 original size:3 final size:3
Alignment explanation
Indices: 215987--216033 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
215977 GTACAAGCAG
215987 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
216034 GATGATGATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:217819 original size:45 final size:44
Alignment explanation
Indices: 217770--217884 Score: 140
Period size: 45 Copynumber: 2.5 Consensus size: 44
217760 CATGTGTGAT
* * *
217770 TATATGTCTTAACGTATTTGGTTTACATGCCTTAACATGAATGGC
1 TATATG-CTTAGCATATTTGGTTTACACGCCTTAACATGAATGGC
* * *
217815 TATATGCTTTAGCATATTGGGTTTACACGCCTTATCATGAATGGT
1 TATATGC-TTAGCATATTTGGTTTACACGCCTTAACATGAATGGC
*
217860 TATATACCTTAGCATATTTGGTTTA
1 TATAT-GCTTAGCATATTTGGTTTA
217885 GATAGTGAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 1 0.02
45 58 0.97
46 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (44 bp):
TATATGCTTAGCATATTTGGTTTACACGCCTTAACATGAATGGC
Found at i:222052 original size:20 final size:20
Alignment explanation
Indices: 222023--222069 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
222013 CTCTTTTTTG
*
222023 CTCTTCTTCTTT-CTTCTCT
1 CTCTTTTTCTTTCCTTCTCT
*
222042 CTCATTTTTCTTTCCTTCTTT
1 CTC-TTTTTCTTTCCTTCTCT
222063 CTCTTTT
1 CTCTTTT
222070 CTTCCTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 12 0.50
21 9 0.38
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (20 bp):
CTCTTTTTCTTTCCTTCTCT
Found at i:222785 original size:21 final size:22
Alignment explanation
Indices: 222760--222803 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
222750 AAGTGATTAA
222760 TTTAAGTTATTTTA-GTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
*
222781 TTTAAGTTATTTTATTTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
222803 T
1 T
222804 ACTTTATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (22 bp):
TTTAAGTTATTTTATGTTAAAT
Found at i:227735 original size:70 final size:68
Alignment explanation
Indices: 227486--227809 Score: 290
Period size: 68 Copynumber: 4.8 Consensus size: 68
227476 ATGATGAACG
* * * *
227486 CCATAAGATTATGTATATGATGTAAATTCTATATACCATATGAGATGATCAAGTATGCATGATGT
1 CCATGAGAATATGTATATGATGTAAATTCCATATACTATATGAGATGAT-AAGTATGCATGAT-T
227551 -ATAT
64 AATAT
* * * * *
227555 -TAT-AGGATAGTGTATATGATGTAAATTCCATACACTATAAGAGGTGATTAAGTATGCATGATT
1 CCATGAGAATA-TGTATATGATGTAAATTCCATATACTATATGAGATGA-TAAGTATGCATGATT
*
227618 AAT-G
64 AATAT
* * *
227622 CCACGAGAATATGTATATGATGTATATTCCACATACTATATGAGATGAGTAAGTATGCATGATTA
1 CCATGAGAATATGTATATGATGTAAATTCCATATACTATATGAGATGA-TAAGTATGCATGATTA
227687 AGTAT
65 A-TAT
* * * * * *
227692 CCATGAGAATATGTATATGATGTATATTCCATATATTACATGAGTTGAT-TG-A-GCAAGCA-TA
1 CCATGAGAATATGTATATGATGTAAATTCCATATACTATATGAGATGATAAGTATGCATG-ATTA
227753 A-AT
65 ATAT
* * *
227756 GCCAAGAGATTATGTATATGATGTAAATTTCATATACCT-TATGAGATGAGTAAG
1 -CCATGAGAATATGTATATGATGTAAATTCCATATA-CTATATGAGATGA-TAAG
227810 CATGTGTGTG
Statistics
Matches: 209, Mismatches: 34, Indels: 26
0.78 0.13 0.10
Matches are distributed among these distances:
64 2 0.01
65 39 0.19
66 9 0.04
67 8 0.04
68 100 0.48
69 8 0.04
70 43 0.21
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (68 bp):
CCATGAGAATATGTATATGATGTAAATTCCATATACTATATGAGATGATAAGTATGCATGATTAA
TAT
Found at i:227776 original size:65 final size:67
Alignment explanation
Indices: 227565--227811 Score: 221
Period size: 70 Copynumber: 3.7 Consensus size: 67
227555 TATAGGATAG
* * * * * * * * *
227565 TGTATATGATGTAAATTCCATACACTATAAGAGGTGATTAAGTATGCATGATTAATGCCACGAGA
1 TGTATATGATGTATATTCCATATACTACATGAGATGAGTAAGCAAGCATGA-TAATGCCAAGAGA
227630 ATA
65 ATA
* * * * * *
227633 TGTATATGATGTATATTCCACATACTATATGAGATGAGTAAGTATGCATGATTAAGTATCCATGA
1 TGTATATGATGTATATTCCATATACTACATGAGATGAGTAAGCAAGCATGA-TAA-T-GCCAAGA
227698 GAATA
63 GAATA
* * * * *
227703 TGTATATGATGTATATTCCATATATTACATGAGTTGATTGAGCAAGCAT-A-AATGCCAAGAGAT
1 TGTATATGATGTATATTCCATATACTACATGAGATGAGTAAGCAAGCATGATAATGCCAAGAGAA
227766 TA
66 TA
* * *
227768 TGTATATGATGTAAATTTCATATACCT-TATGAGATGAGTAAGCA
1 TGTATATGATGTATATTCCATATA-CTACATGAGATGAGTAAGCA
227812 TGTGTGTGAA
Statistics
Matches: 150, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
65 44 0.29
66 2 0.01
67 2 0.01
68 49 0.33
69 2 0.01
70 51 0.34
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.34
Consensus pattern (67 bp):
TGTATATGATGTATATTCCATATACTACATGAGATGAGTAAGCAAGCATGATAATGCCAAGAGAA
TA
Found at i:227993 original size:31 final size:31
Alignment explanation
Indices: 227931--228000 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
227921 ACCATAAGAT
* *
227931 GCCCAAGG-GCAATGGCGATATACGTTGCTA
1 GCCCAAGGTGCAATGGCGATATACATTACTA
*
227961 GCCCAAGGTGCAATGAG-GATGTACATTACTA
1 GCCCAAGGTGCAATG-GCGATATACATTACTA
227992 GCCCAAGGT
1 GCCCAAGGT
228001 TGATAGGGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 8 0.23
31 26 0.74
32 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.20
Consensus pattern (31 bp):
GCCCAAGGTGCAATGGCGATATACATTACTA
Found at i:235009 original size:23 final size:21
Alignment explanation
Indices: 234979--235030 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
234969 ACTACCAAGA
*
234979 AAAGAAGAGGAAGGAGAAGAAAG
1 AAAGAAGAGGAA-GA-AAAAAAG
235002 AAAGAAGAGGAAGAAAAAAAG
1 AAAGAAGAGGAAGAAAAAAAG
*
235023 GAAGAAGA
1 AAAGAAGA
235031 AAAAGGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 13 0.48
22 2 0.07
23 12 0.44
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (21 bp):
AAAGAAGAGGAAGAAAAAAAG
Found at i:240615 original size:11 final size:11
Alignment explanation
Indices: 240591--240631 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
240581 ACTCTCATAA
*
240591 TAATAATATCT
1 TAATAATATTT
*
240602 TAATATTATTT
1 TAATAATATTT
240613 TAATAATATTT
1 TAATAATATTT
*
240624 TACTAATA
1 TAATAATA
240632 AAATATTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (11 bp):
TAATAATATTT
Found at i:245400 original size:71 final size:71
Alignment explanation
Indices: 245261--245411 Score: 176
Period size: 71 Copynumber: 2.1 Consensus size: 71
245251 ATGCATTGGT
* * * * ** *
245261 TTAAACATAGCATGTAACTTGATCTCTGTCTTTATATTTTACTAAGATATAAACTCTTGGAGTGA
1 TTAAACATGGCATGTAACTTGATCTCTATCTTTATATTTCACTAAGACATAAACTCTTAAAGTAA
*
245326 AACACC
66 AACAAC
* * * * *
245332 TTAAACATGGCATGTCACTTGGTCTCTATCTTTGTCTTTCACTAGGACATAAACTCTTAAAGTAA
1 TTAAACATGGCATGTAACTTGATCTCTATCTTTATATTTCACTAAGACATAAACTCTTAAAGTAA
245397 AACAAC
66 AACAAC
*
245403 TTGAACATG
1 TTAAACATG
245412 ATGTGTAATA
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (71 bp):
TTAAACATGGCATGTAACTTGATCTCTATCTTTATATTTCACTAAGACATAAACTCTTAAAGTAA
AACAAC
Found at i:246652 original size:11 final size:11
Alignment explanation
Indices: 246638--246663 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
246628 ATAATTAAAA
246638 TATTATTATTT
1 TATTATTATTT
246649 TATTATTATTT
1 TATTATTATTT
246660 TATT
1 TATT
246664 CCAAAATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TATTATTATTT
Found at i:248221 original size:33 final size:33
Alignment explanation
Indices: 248180--248248 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
248170 TATAATCATG
248180 CATGCTCCCATAAAACCAAACATTACTAAAACT
1 CATGCTCCCATAAAACCAAACATTACTAAAACT
248213 CATGCTCCCATAAAACCAAACATTACTAAAACT
1 CATGCTCCCATAAAACCAAACATTACTAAAACT
248246 CAT
1 CAT
248249 ACACAAGTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.45, C:0.30, G:0.03, T:0.22
Consensus pattern (33 bp):
CATGCTCCCATAAAACCAAACATTACTAAAACT
Found at i:249797 original size:6 final size:7
Alignment explanation
Indices: 249767--249805 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
249757 TTCCAAGCCT
249767 TTTTCTC
1 TTTTCTC
*
249774 CTTTCTC
1 TTTTCTC
*
249781 CTTTCTC
1 TTTTCTC
*
249788 TTTTCTT
1 TTTTCTC
249795 TTTTCTC
1 TTTTCTC
249802 TTTT
1 TTTT
249806 GTTCTCAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTTCTC
Found at i:255206 original size:19 final size:19
Alignment explanation
Indices: 255157--255204 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
255147 TTAATATTTT
255157 AATATTATTTTATTCATAA
1 AATATTATTTTATTCATAA
255176 AATATTATTTTATTCA-AA
1 AATATTATTTTATTCATAA
*
255194 AATATTCTTTT
1 AATATTATTTT
255205 TACTCGTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 12 0.43
19 16 0.57
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (19 bp):
AATATTATTTTATTCATAA
Found at i:255635 original size:61 final size:61
Alignment explanation
Indices: 255540--255702 Score: 170
Period size: 61 Copynumber: 2.7 Consensus size: 61
255530 CATTATGAAC
* * * *
255540 AAGTATCAAAACATTGTTTAAATGTATCGATAGATTTGAAGTAGACAGCAACCCATGGAAA
1 AAGTATCGATACATTGTCTAAATGTATAGATAGATTTGAAGTAGACAGCAACCCATGGAAA
* * * ** *
255601 AAGTATCGATACATTGTCTAAATGTATAGATAGATTTTGGA-TAGAGAGTAGTCCATGGGAA
1 AAGTATCGATACATTGTCTAAATGTATAGATAGA-TTTGAAGTAGACAGCAACCCATGGAAA
** *
255662 AAGTATCGATACATTG-CTTCATGTATCAG-TAGATTTAAAGT
1 AAGTATCGATACATTGTCTAAATGTAT-AGATAGATTTGAAGT
255703 TAAGTCATGG
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
59 4 0.05
60 13 0.15
61 63 0.74
62 5 0.06
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (61 bp):
AAGTATCGATACATTGTCTAAATGTATAGATAGATTTGAAGTAGACAGCAACCCATGGAAA
Found at i:259977 original size:24 final size:24
Alignment explanation
Indices: 259946--260002 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
259936 GTCATCATGT
*
259946 CATATCAGTATACCATGTCAATGC
1 CATATCAGTATACAATGTCAATGC
* *
259970 CATATCAGTATGCAATGTGAATGC
1 CATATCAGTATACAATGTCAATGC
*
259994 CACATCAGT
1 CATATCAGT
260003 GTTTATTTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (24 bp):
CATATCAGTATACAATGTCAATGC
Found at i:261931 original size:26 final size:27
Alignment explanation
Indices: 261900--261962 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
261890 AAAAATTTAT
261900 TTAATTTAAA-AT-AAAAATATAAAAA
1 TTAATTTAAATATAAAAAATATAAAAA
261925 CTTAA-TTAAATATAAAAAATATAAAAA
1 -TTAATTTAAATATAAAAAATATAAAAA
*
261952 TTTATTTAAAT
1 TTAATTTAAAT
261963 TTTCATAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
25 5 0.15
26 9 0.27
27 19 0.58
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (27 bp):
TTAATTTAAATATAAAAAATATAAAAA
Found at i:265486 original size:6 final size:6
Alignment explanation
Indices: 265475--265500 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
265465 CTTCCTAACC
265475 TTGGTT TTGGTT TTGGTT TTGGTT TT
1 TTGGTT TTGGTT TTGGTT TTGGTT TT
265501 CTACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (6 bp):
TTGGTT
Found at i:270450 original size:37 final size:39
Alignment explanation
Indices: 270375--270468 Score: 165
Period size: 37 Copynumber: 2.5 Consensus size: 39
270365 GCCAATTGGG
270375 AGAGCAGAAAGATTGTTTTTATTTATTTTTTTTGCCAGA
1 AGAGCAGAAAGATTGTTTTTATTTATTTTTTTTGCCAGA
270414 AGAGCAGAAAGATTGTTTTTA-TT-TTTTTTTTGCCAGA
1 AGAGCAGAAAGATTGTTTTTATTTATTTTTTTTGCCAGA
*
270451 AGAGCAGAAAGATAGTTT
1 AGAGCAGAAAGATTGTTT
270469 CGATTCTACC
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
37 31 0.57
38 2 0.04
39 21 0.39
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (39 bp):
AGAGCAGAAAGATTGTTTTTATTTATTTTTTTTGCCAGA
Found at i:279686 original size:21 final size:22
Alignment explanation
Indices: 279661--279754 Score: 61
Period size: 22 Copynumber: 4.3 Consensus size: 22
279651 CGTTACGAAA
279661 AATATTATAAAAAATATAAATT
1 AATATTATAAAAAATATAAATT
* * * *
279683 -ATATTATATTAAATTTTAATTT
1 AATATTATA-AAAAATATAAATT
* **
279705 AATATTTTTTAAAA-ATAAATT
1 AATATTATAAAAAATATAAATT
279726 -AT-TTATAAAAAATAAATAAATT
1 AATATTATAAAAAAT--ATAAATT
*
279748 GATATTA
1 AATATTA
279755 ATTATAAAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
19 7 0.13
20 2 0.04
21 13 0.25
22 20 0.38
23 8 0.15
24 3 0.06
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (22 bp):
AATATTATAAAAAATATAAATT
Found at i:289535 original size:57 final size:57
Alignment explanation
Indices: 289465--289576 Score: 181
Period size: 57 Copynumber: 2.0 Consensus size: 57
289455 CTTAGTCGTA
289465 GGCAACAGGATATATAACCAAGTGGA-TTTTGAGTATATACAGGAAATACCCTTCAAC
1 GGCAACAGGATATATAACCAAGTGGACTTTT-AGTATATACAGGAAATACCCTTCAAC
* * *
289522 GGCAACATGATATATAACCAAGTGGACTTTTAGTATATACATGAAATACCTTTCA
1 GGCAACAGGATATATAACCAAGTGGACTTTTAGTATATACAGGAAATACCCTTCA
289577 TTCAACTCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
57 47 0.92
58 4 0.08
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (57 bp):
GGCAACAGGATATATAACCAAGTGGACTTTTAGTATATACAGGAAATACCCTTCAAC
Found at i:289999 original size:2 final size:2
Alignment explanation
Indices: 289992--290033 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
289982 ATGTTTTTGA
289992 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
290034 GTATTCTTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:304433 original size:91 final size:90
Alignment explanation
Indices: 304278--304462 Score: 343
Period size: 91 Copynumber: 2.0 Consensus size: 90
304268 AAGTGCAATG
304278 TTGAAAGTTAAAGCCTCAAGCTGGCCATGAGTGCCTGTTTCCTCCCTTTGCTTTGGTTCTTGTTT
1 TTGAAAGTTAAAGCCTCAAGCTGGCCATGAGTGCCTGTTTCCTCCCTTTGCTTTGGTTCTTGTTT
304343 GAATGGGTCAGATTCAATGTTTTTGT
66 GAATGGGT-AGATTCAATGTTTTTGT
*
304369 TTGAAAGTTAAAGCCTCAAGCTGGCCATGAGTGCTTGTTTCCTCCCTTTGCTTTGGTTCTTGTTT
1 TTGAAAGTTAAAGCCTCAAGCTGGCCATGAGTGCCTGTTTCCTCCCTTTGCTTTGGTTCTTGTTT
*
304434 GAATGGGTGGATTCAATGTTTTTGT
66 GAATGGGTAGATTCAATGTTTTTGT
304459 TTGA
1 TTGA
304463 TGAATGCTGA
Statistics
Matches: 92, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
90 20 0.22
91 72 0.78
ACGTcount: A:0.17, C:0.17, G:0.24, T:0.42
Consensus pattern (90 bp):
TTGAAAGTTAAAGCCTCAAGCTGGCCATGAGTGCCTGTTTCCTCCCTTTGCTTTGGTTCTTGTTT
GAATGGGTAGATTCAATGTTTTTGT
Found at i:309740 original size:19 final size:19
Alignment explanation
Indices: 309696--309737 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
309686 TAAATATTAA
309696 TATTTTATTTATAAAATAT
1 TATTTTATTTATAAAATAT
*
309715 TATTTTATTTA-AAAGTAT
1 TATTTTATTTATAAAATAT
309733 T-TTTT
1 TATTTT
309738 TTACCTATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.18
18 7 0.32
19 11 0.50
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTTTATTTATAAAATAT
Found at i:311715 original size:18 final size:19
Alignment explanation
Indices: 311694--311729 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
311684 TATATATATA
*
311694 TTAATAT-ATTTTTAATTG
1 TTAATATGATTTTCAATTG
311712 TTAATATGATTTTCAATT
1 TTAATATGATTTTCAATT
311730 AGGTTTGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (19 bp):
TTAATATGATTTTCAATTG
Found at i:314063 original size:22 final size:22
Alignment explanation
Indices: 314037--314081 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
314027 AGTAAGTAAG
314037 GCTTGGTAAAATTAGTTAATTT
1 GCTTGGTAAAATTAGTTAATTT
314059 GCTTGGTAAAATTAGTTAATTT
1 GCTTGGTAAAATTAGTTAATTT
314081 G
1 G
314082 AAAGGAAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.44
Consensus pattern (22 bp):
GCTTGGTAAAATTAGTTAATTT
Found at i:315352 original size:23 final size:24
Alignment explanation
Indices: 315301--315352 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
315291 AAAATGTTAT
*
315301 GATATGTTTTATATGATATACACA
1 GATATGTTTTATATGATATAAACA
*
315325 TATATGTTATTAT-T-ATATAAACA
1 GATATGTT-TTATATGATATAAACA
315348 GATAT
1 GATAT
315353 AATAATATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 12 0.50
24 8 0.33
25 4 0.17
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (24 bp):
GATATGTTTTATATGATATAAACA
Found at i:320278 original size:145 final size:141
Alignment explanation
Indices: 320025--320284 Score: 360
Period size: 145 Copynumber: 1.8 Consensus size: 141
320015 TGGTTGAATA
*
320025 GGGAATTTATTTTTTGTAGCTTGGAAACTAGACAGTAATCTAGCCACAGTAATTTTTTCTCTAAG
1 GGGAATTTATTTTTTGTAGCTGGGAAACTAGACAGTAATCTAGCCACAGTAATTTTTTCTCTAAG
* *
320090 TTCCAGAAATGGATGAAACATGAGGGTCTCTTCATATTGCATTTCTATGTTTTTTATAGATGTCT
66 TTCCAGAAATGGATGAAACATGAAGATCTCTTCATATTGCATTTCTATGTTTTTTATAGATGTCT
320155 TTTGTTATATT
131 TTTGTTATATT
* * * *
320166 GGGAATTATTTTTTTTGTAGCTGGGCAACTAGATAGTTATCTAGCCACAGTAATATCTTTTTCTG
1 GGGAATT-TATTTTTTGTAGCTGGGAAACTAGACAGTAATCTAGCCACAGT-A-AT-TTTTTCT-
** ** *
320231 CT-AGTTCTGGAAATGGATGAAGTATGAAGATCTCTTCATGTTGCATTTCTATGT
61 CTAAGTTCCAGAAATGGATGAAACATGAAGATCTCTTCATATTGCATTTCTATGT
320285 CCTATGTAAA
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
141 7 0.07
142 38 0.37
143 1 0.01
144 2 0.02
145 52 0.51
146 2 0.02
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (141 bp):
GGGAATTTATTTTTTGTAGCTGGGAAACTAGACAGTAATCTAGCCACAGTAATTTTTTCTCTAAG
TTCCAGAAATGGATGAAACATGAAGATCTCTTCATATTGCATTTCTATGTTTTTTATAGATGTCT
TTTGTTATATT
Found at i:324344 original size:63 final size:64
Alignment explanation
Indices: 324237--324356 Score: 161
Period size: 63 Copynumber: 1.9 Consensus size: 64
324227 ACTGATTCAG
* * * * *
324237 CCCCTTTAATAACAAATTGTGTAAAATTAAAAGAGAATTAGAAATACTTAATAACCAATTTAGC
1 CCCCTTTAATAACAAATTCTATAAAATTAAAAGAAAACTAGAAATACTTAACAACCAATTTAGC
* * *
324301 CCCCTTT-ATAACAAATTCTATAAAATTATAAGAAAACTGGAAATGCTTAACAACCA
1 CCCCTTTAATAACAAATTCTATAAAATTAAAAGAAAACTAGAAATACTTAACAACCA
324357 GTTCAGCCAC
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
63 41 0.85
64 7 0.15
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (64 bp):
CCCCTTTAATAACAAATTCTATAAAATTAAAAGAAAACTAGAAATACTTAACAACCAATTTAGC
Found at i:331781 original size:42 final size:42
Alignment explanation
Indices: 331735--331826 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
331725 TCTTTTAATT
* *
331735 CAACAGTTGTGGCATGGTCGTCGAACTGAATC-TCTTCTAGCA
1 CAACAGTTGTGGCATGGTCATCGAACTGAA-CATCTTCTAACA
*
331777 CAACAGTTGTGGCATGGTCATCGAACTGAACATCTTTTAACA
1 CAACAGTTGTGGCATGGTCATCGAACTGAACATCTTCTAACA
331819 CAACAGTT
1 CAACAGTT
331827 ATGGAATGTC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 1 0.02
42 45 0.98
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (42 bp):
CAACAGTTGTGGCATGGTCATCGAACTGAACATCTTCTAACA
Found at i:332936 original size:20 final size:21
Alignment explanation
Indices: 332913--332954 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
332903 CGTAACAGCC
332913 CAAT-GTCACACAAAACATAA
1 CAATAGTCACACAAAACATAA
*
332933 CAATAGGTCACACAATACATAA
1 CAATA-GTCACACAAAACATAA
332955 AACCTAGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
22 15 0.79
ACGTcount: A:0.52, C:0.24, G:0.07, T:0.17
Consensus pattern (21 bp):
CAATAGTCACACAAAACATAA
Found at i:333233 original size:184 final size:184
Alignment explanation
Indices: 332924--333260 Score: 518
Period size: 184 Copynumber: 1.8 Consensus size: 184
332914 AATGTCACAC
*
332924 AAAACATAACAATAGGTCACACAATACATAAAACCTAGTCACGTAGTGCCTAAAAACTAGTGAAC
1 AAAACATAACAATAGGTCACACAATACATAAAACCTAGTCACGCAGTGCCTAAAAACTAGTGAAC
* * *
332989 AAAAGCCTCAAAATAAGAGGTCAATTGCACAAGTCATGCATAGCCAGTCTCGCAATACCTAATAA
66 AAAAGCCTCAAAACAAGAGATCAATTGCACAAGTCATGCATAGCCAATCTCGCAATACCTAATAA
333054 TAACTCACTCAATGCATAATATCCACTCACATATGCCAACATAACTAGTCACGT
131 TAACTCACTCAATGCATAATATCCACTCACATATGCCAACATAACTAGTCACGT
* *** *
333108 AAAACATAACAGTAGGTCATGTAATACGTAAAAACC-AGTCACGCAGTGCCTAAAAACTAGTGAA
1 AAAACATAACAATAGGTCACACAATACAT-AAAACCTAGTCACGCAGTGCCTAAAAACTAGTGAA
*
333172 CAAAAGCCTCAAAACAAGAGATGAATTGCACAAGTCACT-CACT-GCCAATCTCGCAATACCTAA
65 CAAAAGCCTCAAAACAAGAGATCAATTGCACAAGTCA-TGCA-TAGCCAATCTCGCAATACCTAA
* *
333235 TAATAAGTCACTCAATGCGTAATATC
128 TAATAACTCACTCAATGCATAATATC
333261 GCAATACCTA
Statistics
Matches: 138, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
184 130 0.94
185 8 0.06
ACGTcount: A:0.42, C:0.24, G:0.13, T:0.21
Consensus pattern (184 bp):
AAAACATAACAATAGGTCACACAATACATAAAACCTAGTCACGCAGTGCCTAAAAACTAGTGAAC
AAAAGCCTCAAAACAAGAGATCAATTGCACAAGTCATGCATAGCCAATCTCGCAATACCTAATAA
TAACTCACTCAATGCATAATATCCACTCACATATGCCAACATAACTAGTCACGT
Found at i:333268 original size:37 final size:37
Alignment explanation
Indices: 333203--333296 Score: 154
Period size: 37 Copynumber: 2.6 Consensus size: 37
333193 TGAATTGCAC
* * *
333203 AAGTCACTCACTGC-CAATCTCGCAATACCTAATAAT
1 AAGTCACTCAATGCGTAATATCGCAATACCTAATAAT
333239 AAGTCACTCAATGCGTAATATCGCAATACCTAATAAT
1 AAGTCACTCAATGCGTAATATCGCAATACCTAATAAT
333276 AAGTCACTCAATGCGTAATAT
1 AAGTCACTCAATGCGTAATAT
333297 AACTCACATT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 13 0.24
37 41 0.76
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (37 bp):
AAGTCACTCAATGCGTAATATCGCAATACCTAATAAT
Found at i:333655 original size:22 final size:22
Alignment explanation
Indices: 333615--333657 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
333605 AATGTCACAC
*
333615 AATACATAATAATAGGTCACGA
1 AATACATAAAAATAGGTCACGA
333637 AATACATAAAAATCA-GTCACG
1 AATACATAAAAAT-AGGTCACG
333658 CAATGTCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.51, C:0.16, G:0.12, T:0.21
Consensus pattern (22 bp):
AATACATAAAAATAGGTCACGA
Found at i:334020 original size:21 final size:22
Alignment explanation
Indices: 333987--334030 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
333977 AAGTGATTAA
333987 TTTAAGTTATTTTA-GTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
* * *
334008 TTTAGGTTGTTTTATTTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
334030 T
1 T
334031 ACTTTAAGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.61
Consensus pattern (22 bp):
TTTAAGTTATTTTATGTTAAAT
Found at i:335096 original size:170 final size:172
Alignment explanation
Indices: 334509--335242 Score: 749
Period size: 171 Copynumber: 4.3 Consensus size: 172
334499 NNNNNNNNNN
* * *
334509 GATTTTAAGTTGAATTTTTTTATATTTTTGTTTAAAACAGATTATAATTGAATGA-CTGCC-TCA
1 GATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAAT-ATCTGCCTTGA
** * * * * ***
334572 GAAAATATAAAGAAAAAGGCTTTTATTGACAAGAAAAGTCCATTTATAGTCACCCATTTCTTCAA
65 GAAACGATGAAGAAAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCAAGCCTTCAA
** *
334637 AAGCCTTATTAGGCACTTTAAATGGTTTTATAATTTGATAATT
130 AAGCCTTATTACTCACTTTAAATGGTTTTATAATCTGATAATT
* * * * * **
334680 GATTTTAGGTTAAACTTTTTTT-TATTTTTGGTTAATAA-AAATTATAATTAAATATCTATCTTG
1 GATTTTAAGTTGAA-TTTTTTTACATTTTTGGTTAA-AACAGATTATAATTGAATATCTGCCTTG
* * ** * * ** *
334743 AGAAACG-TGAAGAAAAAGTCATTCATTGGTAA-ACAAAACCCAATTATAATCAGTCAAGCCTTT
64 AGAAACGATGAAGAAAAAGGCATTCATTGGCAAGA-AAAGTCCATTTATAGTCACCCAAGCCTTC
* * * *
334806 GAAAGCCTTATTACTCGCTTTAAATGATTTTATAATATGATAATT
128 AAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTGATAATT
* *
334851 GATTTTAAGTT-AA-ATTTTTACATTTTTGGTTAAAACAGATTATAATTGAA-AGTCTGCCTTGG
1 GATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATA-TCTGCCTTGA
* * * **
334913 GAAAC-ATGAAGAAATAGGCATTCATCGGCAAGAAAAGTCCATTTATAGTTACCCATTCCTTCAA
65 GAAACGATGAAGAAAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCAAGCCTTCAA
* * * * * *
334977 AAGCCTTATTAATCATTTTCAAA-AGTTTTTTAATCTCATAAAT
130 AAGCCTTATTACTCACTTT-AAATGGTTTTATAATCTGATAATT
* * *
335020 AATTTTAAATTGAATTTTTTTACATTTTTGGTT-AAACAGATTATAATTGAATATCTGCCTTAAG
1 GATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATATCTGCCTTGAG
* * * **
335084 AAACGA-GAAGAAAAAGGCATTCATTGGTAAGAAAAG-CCTATTTATAGTCGCCCAAGGCTTTGA
66 AAACGATGAAGAAAAAGGCATTCATTGGCAAGAAAAGTCC-ATTTATAGTCACCCAAGCCTTCAA
** * *
335147 AAGCCTTATTACTTGCTTTAAATGGTTTTATAACCTTATAATT
130 AAGCCTTATTACTCACTTTAAATGGTTTTATAATCTGATAATT
* *
335190 GATTTAAAGTTGAATTTTTTTACATTTTTGGTTAAAAAAGATTATAATTGAAT
1 GATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAAT
335243 GNNNNNNNNN
Statistics
Matches: 453, Mismatches: 92, Indels: 36
0.78 0.16 0.06
Matches are distributed among these distances:
168 8 0.02
169 121 0.27
170 145 0.32
171 164 0.36
172 15 0.03
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (172 bp):
GATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATATCTGCCTTGAG
AAACGATGAAGAAAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCAAGCCTTCAAA
AGCCTTATTACTCACTTTAAATGGTTTTATAATCTGATAATT
Found at i:339493 original size:172 final size:171
Alignment explanation
Indices: 339112--339510 Score: 444
Period size: 171 Copynumber: 2.3 Consensus size: 171
339102 NNNNNNNNNN
* * * * *
339112 AAGCAAAAGCCATCCATAGGAGAGAAAGGTCCATTTATAGTTTCTCAAGCCTTTAAAAGCCTTAT
1 AAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATACTTACTCAAGCCTTTAAAAGCCTAAT
* * * *
339177 CACTCACTTTAAATGGTTTTATATATTTATAATTGATATTAAGTTAGATTTTTTTACATTTCGGG
66 CACTCACTTAAAATGGTTTTATATACTCATAATTGATATTAAGTTAGATTTCTTTACATTTCGGG
* * * * * ** *
339242 TTAAAATATGCTCTAGTTAATTGTTTGTCTTGGGAAACGTG
131 CTAAAATATGCTATAATTAATTGTCTGCCTCAGAAAACGTG
* * *
339283 AAGCAAAAGTCATCCATGGGAGAAAAAAGTCCATTTATACTTACTCAAGCCTTTGAAAGCCTAAT
1 AAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATACTTACTCAAGCCTTTAAAAGCCTAAT
* * * * **
339348 TACTCGCTTAAAATGGTTTTATACT-CTCATAATTGATTTTAAGTTGGATTTCCTTTACATTTTT
66 CACTCACTTAAAATGGTTTTATA-TACTCATAATTGATATTAAGTTAGATTT-CTTTACATTTCG
339412 GGCTAAAATATGCTATAATTGAA-TGTCTGCCTCAGAAAACGTG
129 GGCTAAAATATGCTATAATT-AATTGTCTGCCTCAGAAAACGTG
* * * * * * * *
339455 AGGTAAAAGCCACCCATGGGGGAGAAAAGTCTATTTATAGTCACCCAAG-CTTTAAA
1 AAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATACTTACTCAAGCCTTTAAA
339511 TGATTTTATA
Statistics
Matches: 188, Mismatches: 37, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
171 105 0.56
172 81 0.43
173 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (171 bp):
AAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATACTTACTCAAGCCTTTAAAAGCCTAAT
CACTCACTTAAAATGGTTTTATATACTCATAATTGATATTAAGTTAGATTTCTTTACATTTCGGG
CTAAAATATGCTATAATTAATTGTCTGCCTCAGAAAACGTG
Found at i:339629 original size:149 final size:150
Alignment explanation
Indices: 339353--339653 Score: 417
Period size: 149 Copynumber: 2.0 Consensus size: 150
339343 CTAATTACTC
* *
339353 GCTTAAAATGGTTTTATACTCTCATAATTGATTTTAAGTTGGATTTCCTTTACATTTTTGGCTAA
1 GCTTAAAATGATTTTATACTCTCATAACTGATTTTAAGTTGGATTTCCTTTACATTTTTGGCTAA
* * * * * *
339418 AATATGCTATAATTGAATGTCTGCCTCAGAAAACGTGAGGTAAAAGCCACCCATGGGGGAGAAAA
66 AATATGCTATAATAGAATGTCTGCCTCAGAAAACGTAAAGCAAAAGCCACCCATGAGAGAGAAAA
*
339483 GTCTATTTATAGTCACCCAA
131 GTCCATTTATAGTCACCCAA
* * * *
339503 GCTTTAAATGATTTTATATTCTCATAACTGATTTTAAGTTGGATTT-TTTTACATTTTTGGTTAA
1 GCTTAAAATGATTTTATACTCTCATAACTGATTTTAAGTTGGATTTCCTTTACATTTTTGGCTAA
* * * *
339567 AATATGCTATAATAGAGTGTCTGCCTTAGGAAACGTAAAGCAAAAGCCATCCACT-AGAGAGAAA
66 AATATGCTATAATAGAATGTCTGCCTCAGAAAACGTAAAGCAAAAGCCACCCA-TGAGAGAGAAA
*
339631 AGTCCATTTATAGTCACTCAA
130 AGTCCATTTATAGTCACCCAA
339652 GC
1 GC
339654 CTTTGAAAGC
Statistics
Matches: 132, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
149 89 0.67
150 43 0.33
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (150 bp):
GCTTAAAATGATTTTATACTCTCATAACTGATTTTAAGTTGGATTTCCTTTACATTTTTGGCTAA
AATATGCTATAATAGAATGTCTGCCTCAGAAAACGTAAAGCAAAAGCCACCCATGAGAGAGAAAA
GTCCATTTATAGTCACCCAA
Found at i:340251 original size:171 final size:169
Alignment explanation
Indices: 339503--352143 Score: 7073
Period size: 171 Copynumber: 73.4 Consensus size: 169
339493 AGTCACCCAA
* *
339503 GCTTTAAATGATTTTATATTCTCATAACTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
339568 ATATGCTATAATAGAGTGTCTGCCTTAGGAAACGTAAAGCAAAAGCCATCCACTAGAGAGAAAAG
66 ATATG-TATAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
339633 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
339674 TCTCTAAATTGTTTTATATTCTCATAATTAATTTTAAGTTGGA-TTTTTTATATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
339738 ATATGCTATTACTAAACGTC-AGCCCTAGGAA-ATGTAAAGCAAAAGCCATTCATT--AGAGAAA
66 ATATG-TATAATTGAATGTCTA-CCTTAGAAACATG--AAGCAAAAGCCATCCATTGGAGAGAAA
* *
339799 AGTCGATTTATAGTCACTCAAGCCTTCGAAAGCCTTATTACTC
127 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * *
339842 GCTTTAAATGGTTTTATATTCCCATAACTGATTTTAAGTGGGATTGTTTTT-CATTTTTGGTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATT-TTTTTACATTTTTGGTTAA
* * * * * * * *
339906 AATATTCTTTTACTT-CATGTCTACCTTAG-GAGATGTAAAGAAAAAGCCATCCATGGGAGAGAA
65 AATA-T-GTATAATTGAATGTCTACCTTAGAAACATG--AAGCAAAAGCCATCCATTGGAGAGAA
339969 AAGTCCATTTATAGTCACTCAAGCCTTTGAAAAGCCTTATTACTC
126 AAGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
* * * * *
340014 GCTTTAAATGGTTTTATATTCTGATAATTCAATTTAAGTTAGATTTTTTTACATTTTTGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
340079 ATATGTAATAATTTAATGTTTACCTCTAGAAACATGAAGCGAAACCCATCCATTGGAAAGAAAAG
66 ATATGT-ATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
** * * * * *
340144 TTTATTTATAGCCACTCAAGCCATTGAGAGCCCTATTATTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
340185 GCTTTACACGGTTTTATATTTTCATAATTGATTTTAAGTTAGATTTTTTTATATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
340250 ATATATCATAATTGAACGTCTATC-TAGGGAA-ATGTAAAGAAAAAGCCA-CC-TATGGTAGAGA
66 ATATGT-ATAATTGAATGTCTACCTTA-GAAACATG--AAGCAAAAGCCATCCAT-TGG-AGAGA
* * * * * *
340311 AATGTCTATTTATAGTTACTCAAGCCATTAAAAGCCTTATTATTC
125 AAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* *
340356 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGCTGGGTTTTTTTTACATTTTTTGGTTA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAG-TTGGATTTTTTTACA-TTTTTGGTTA
* * * * * * *
340421 AAATATGCTATAATTGAATGTTTGCCTCAAAAACCTGAAGTAAAAGCCATCCATTAGAGAGAAAA
64 AAATATG-TATAATTGAATGTCTACCTTAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
** * * * *
340486 GTGAATTTATAATCACTCAAGCCATTGAAAGCCCTATTACCC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * **
340528 GCTTTAAATAGTTTTATATTCTCATAATTGATTTTAAATTAGATTTTTTTTACATTTTTAATTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGA-TTTTTTTACATTTTTGGTTAA
* * * ** * * **
340593 AATATGCTATAATTGATTGTCTATCTTGGGAAATGTGAAGTAAAAACCATCCATTATAGAGAAAA
65 AATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * *
340658 GTCCATTTATAGTGACTCAAGCCTTTGGAAGCCTTATTACAC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
340700 GCTTTAAATTGTTTTGTATTCTCATAATTGATTTTTAGTTAGATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * ** * * **
340765 ATATGTTGTAATTGAATGTTTGTCATGGGAAACGTGAAGCAAAAGCCATCCACTACAGAGAAAAG
66 ATATG-TATAATTGAATGTCT-ACCTTAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
340830 TACATTTATAGTCACTCAAGCCTTCGAAAGCCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* *
340871 ACTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTCGATTTTTTT-CATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * * * *
340935 ATATGCTATTACTGAATGTTTACCTCGAGAAACATGAAGAAAAATCTATCCATCTAG-GATAAAA
66 ATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCAT-TGGAGAGAAAA
* * * * * *
340999 GTCTATTTATAGTCACTCGAGCATTTAAAAGCCTTATTCCAC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
341041 GCTTTAAATAGTTTCATATTCTTATAATTGATTTTAAGTTGGAATTTTTTAAATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * *
341106 A-ATTGCTAGT-ACTGAGTGTCTACTTTAGGAAACATAAAGCAAAAGCCGTCCATTAGAGAGAAA
66 ATA-TG-TA-TAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAA
* *
341169 AGTCCATTTATAGTCACTCAAGCCTTTAAAAGCCTTATTACAC
127 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* *
341212 TCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTT-CTATTTTTTGTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTAC-ATTTTTGGTTAA
* ** ** *
341276 AATATACTATAATTG-ATCGTCTA-CTCCGAAATGTGAAGCAAAAGCCATCCATTGTAGAGAAAA
65 AATAT-GTATAATTGAAT-GTCTACCTTAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* ** *
341339 GTCCATTTATAATCACTCAAATCTTTGAAAGCTTTATTA-TAC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACT-C
* * ** *
341381 GCTTTAAATTG-TTTATATTCTCATAATTGATTTTAGGTTAAATTTTTTAACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * *
341445 ATATATTGTAATTAAATGTCTGCCTTGGGAAACATGAAGCAAAAGCCATCCATTGGAGAAAAAAG
66 ATAT-GTATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
*
341510 TACATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
*
341551 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAATTTTTTACA-TTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * *
341615 ATATGCTATTACTAAATGTCTGCCTCTGGAAACGTGAAG-AAAAGCCATCCATTAGG-GAGAAAA
66 ATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATT-GGAGAGAAAA
** * * *
341678 GTATATTTATAGTCACTCGAA-CTTTTGAAAGCCTTATTCCAC
128 GTCCATTTATAGTCACTC-AAGCCTTTGAAAGCCTTATTACTC
* * * * * * * * * *
341720 TCTTGAAATAGCTTTATATTCTCATAATTGATTTTAATTTAGAATTTTTAAAATTTTTGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
341785 ATATTTTATAATCGAATG-CTTGCCTTAGGAAACATGAAGCAAAAGCCATCTATTGGCGAGAAAA
66 ATA-TGTATAATTGAATGTC-TACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * *
341849 G-CCATTTATAGTCACTCAAGCCTTTGAAAGCATGATTAATC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * * **
341890 TCTTTAAATGGTTTTATATTCCCATAATAGATTTTAAGTTGAAATTTTTTACATTTTTCATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
341955 ATATATTATAATTGAAAGTCTATCTCT-GAAAACCTGAAGTAAAAGCCATCCATTGGAGAGAAAA
66 ATAT-GTATAATTGAATGTCTACCT-TAG-AAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
** * * *
342019 GTGAATTTATAGTCACTCAAGCCATTAAAAGCCCTATTACTC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
342061 GTTTTAAATGATTTTATATTCTCATAATTCATTTTAAGTTGGATTTTTTTATATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * ** **
342126 ATATGCTATAATTGATTGTCCACCTTGAGAAATGTGAAGCAAAAGCCATCCATTATAGAGAAAAG
66 ATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * ** *
342191 TCTATTTATAGTCACTCAAGCCTTTAAAAGTGTTATTACAC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
342232 GCTTTAAATTGTTTTATATTCTCATAATTGATTTTCAGTTAGATTTTTTTACATTTTTTGTGAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
342297 ATATGTTGTAATTGAATCTTTGCCTTAGGAAACGTGAAGAAAAAGCCATCCATTAGAGAG-AAAG
66 ATATG-TATAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * *
342361 TACATTTATAGTCGCCCAAGCCTTTGAAAGCCTTATTACTT
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
342402 GCTTTAAATGATTTTATATTCTCATAATTGATTTTAAATTGAAATTTTTTACA-TTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * * * *
342466 ATATGCTATTACTAAATGTCTGCATCAAGAAACATGAAGAAAAAGTCATCCATTAGG-GAAAAAA
66 ATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATT-GGAGAGAAAA
* * * * *
342530 GTCTATTTATATTAACTCAAGCATTTGAAAGCCTTA-TCCAT-
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTAC-TC
* * * **
342571 ACTTTAAATGGTTTTATATTCTCATAATTCATTTTAAGTTGAAAATTTTTA-ATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
342635 ATATGCTATTACTGAATGTCTGCCATTGGAAACGTGAAGCAAAAGCCATCCGTTAGAGAGAAAAG
66 ATATG-TATAATTGAATGTCTACC-TTAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
342700 TCCATTTATGGTCACTCAAGCCTTTAAAAGCCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
342741 GCTTTAAATAGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTAAAATTTTTTGTTCAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * *
342806 ATAAGTTGTAATTGAATG-CTTGCCTTGGGAAACATGAAGCAAAAGTCATCCATTGGTA-TGAAA
66 ATATG-TATAATTGAATGTC-TACCTT-AGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAA
* * * *
342869 AG-CCATTTATAGTGACTTAAGCCTTCGAAAGCTTTATTACTC
127 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * * *
342911 ACTCTAAATGGTTTTATATTCTCATAATAGATTTTAAATTGAAATTTTTTGTATA-TTTT-GTTA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTG-GATTTTTT-TACATTTTTGGTTA
* *
342974 AAATATGCTATAATTGAATGTCGT-CCTTAGGAAACATGAAGTAAAAGCCATCCATTGGAGAAAA
64 AAATATG-TATAATTGAATGTC-TACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAA
** * * *
343038 AAGTTAATTTATAGTCACTCAAGCCATTGAAAGCCCTATTAGTC
126 AAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
** * * * * *
343082 GCTTTAAACAGATTTATATTCTCAAAATTGATTTTAAGTTGGATTTTTTTATATTTTTGCTTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * *
343147 ATATACTATAATTGAACGTCTACCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGACAAAAG
66 ATAT-GTATAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * *
343212 TCTATTTATAGTCACTCAAGCCATTGAAAGCCTTATTATTT
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
343253 GCTTTAACTGGTTTTATATTCTCATAATTGATTTTAAGCTAGATTTTTTTATATTTTTAGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * ** *
343318 ATTTGTGATAATTGAATGTCTGCCTCAAGAAATATGAAGCAAAAGCCATCTAACGGAGTGAAAAG
66 ATATGT-ATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
343383 -CATATTTATAGTCACTCAAGCCTTTGAAAGCCTTAGTACTC
129 TC-CATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
** * * * *
343424 ATTTTAAATGGTTTTATATTCTCATAATTGATTTTATGTTGGA-TTTTTTGCATGTTGGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
343488 ATATGCTATAATTCAATATCTACCTTGTGAAACGTGAAGCAAAAGCCATCCATTAGAGAGAAAAG
66 ATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * *
343553 TCCATTTATAATCACTCAAGCCTTTGAAAGCTTTATTGCTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* ** * * * * *
343594 GTTTTAAATAATTTTATATTCTGATAATTAACTTTAAGTAGGATTTTTTTACATTTTTAG-TAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * *
343658 TATATGCTATAATTGAACGTTTGCCTTGGGAAACATGAAGCAAAAGCTATTCA-TGGAAGAGAAA
66 -ATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAA
* *
343722 AGTCCATTTATAATCACTTAAGCCTTTGAAAAGCCTTATTACTC
127 AGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
* **
343766 GCTTTAAATGGTTTTATATTCTTATAATTGATTTTAAGTTGGA-TTTTTTACATTTTTGACTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * ** * * * * *
343830 ATATTCTAGAATTGAACATTTACCTCAAGAAACGTGAAG-TAAAGCTATCCA-TGGCAGAGAAAA
66 ATA-TGTATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAAA
* *
343893 GTCTATTTATAGTTACTCAAGCCTTTG-AAGACCTTATTACTC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAG-CCTTATTACTC
* * * * *
343935 GCTTTAAATGGTTTTATACTCTTATAATTGATTTTAAGTTAGATTTTTTTACACTTTTGGTCAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
344000 ATATGTTATAATTGAATG-CTTGCCTTGGTAAGCATGAAGC-AAAGCCATCCTTTAGTA-AGAAA
66 ATATG-TATAATTGAATGTC-TACCTTAG-AAACATGAAGCAAAAGCCATCCATT-GGAGAGAAA
* *
344062 AG-CCATTTATAGTCACTCAAGCTTTTGAAAACCTTATTACTC
127 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
344104 ACTTTAAATGGTTTTATATTCTCATAATAGATTTTAAGTTCG-TATTTTTTACATTTTTGATTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAT-TTTTTTACATTTTTGGTTAA
* * * **************** *
344168 AATATACTATAATTGAATGTTTA-CTGTAGGAAACGTNNNNNNNNNNNNNNNNATGGGAGA-AAA
65 AATAT-GTATAATTGAATGTCTACCT-TA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAA
* * * *
344231 AGTCTATTTAAAGTCACTCAA-CACCTTGAAAGACTTATTACTC
127 AGTCCATTTATAGTCACTCAAGC-CTTTGAAAGCCTTATTACTC
* * * *
344274 GCTTTAAATGGTTTTATATACTCATAATTGATTTTAATTTGGATTTTTTAAAATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
** * **
344339 ATATGTTATAATTGAATG-CTTGGCTTGGGAAACATGAAGCAAAAGCCATCCATTTTCA-AGAAA
66 ATATG-TATAATTGAATGTC-TACCTT-AGAAACATGAAGCAAAAGCCATCCA-TTGGAGAGAAA
* *
344402 AGT-TATTTATAGTCACTCAATCCTTTGAAAGCCTTATTACTC
127 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * *
344444 GCTTTCAATAGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTTTACATTTTTGGTTA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGA--TTTTTTTACATTTTTGGTTA
* * ** ** * * *
344509 AAGTATGCTATTATTGAATGTCTGTCTTAAGAAATGTGAAACAAAAGCCATCAATTAGAGAGAAA
64 AAATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAA
* * **
344574 AGTCCATTTATAGTGACTCAAGTCTTTGAAAGTATTATTACTC
127 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* ***********************
344617 GCTTTAAATGGTTTTATATTCTCATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 GCTTTAAATGGTTTTATATTCTCATAATTGAT----------TTTAAGTTGGATTTTTTTACATT
*****************************************************************
344682 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
56 TTTGGTTAAAATATGTATAATTGAATGTCTACCTTAGAAACATGAAGCAAAAGCCATCCATTGGA
*************************************************
344747 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
121 GAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
********* **** * * * * * ** * * * ***
344796 NNNNNNNNNGGAGAAAAAGTCT-ATTTAAAGTCACTCAACACCTTGAAAGA-CTTATTAC-TCAC
1 GCTTTAAATGGTTTTATATTCTCA--T-AATTGATTTTA-A-GTTG---GATTTTTTTACATTTT
* * *** ** * **** *** * **
344858 T--TT-AAATA-GT-T--TT--ATAGTCT-CATAACTGATTTTAAGTTGGATTTATTTACATTTT
58 TGGTTAAAATATGTATAATTGAAT-GTCTACCTTAGAAACATGAAGCAAAAGCCA--TCCATTGG
** * ** * * * *** *
344913 AG-TTAAACTATATTATAATTGAACGTCTGCCTCAAGAAAC-ATG-AAGCAAAAGT-CATC
120 AGAGAAAAGTCCATT-T-A-T--A-GTC--ACTCAAG--CCTTTGAAAGCCTTATTAC-TC
* ** * * * ** *
344970 -CATTGGAGAGAAAAGTCAATTTATAGTCGCTTAA---ACTTTTGAAAGCCTT--A-TTACTCAC
1 GC-TT---TA-AATGGT---TTTATATTCTCATAATTGA-TTTT--AAG--TTGGATTTTTTTAC
* * ** * ** * * ****
345028 -TTTAAATAGTT-TTATATGCTCATAATTGAAT-TTTAAGTTGGATTTTTTTACATTTTTGGTTA
53 ATTT--TTGGTTAAAATATG-T-ATAATTGAATGTCTACCTTAGA------AACA----TGAAGC
* * *** * * * **
345090 AAATATGCTAT-AATT-GA-ATGTCTA--CC-TTGAGAAACGTAAAGCAAAAGCCATCCATAGGA
104 AAA-A-GCCATCCATTGGAGA-GAAAAGTCCATT--TATA-GT-CA-CTCAAGCC-T---T----
* * *
345149 GAGAAAGGTCCAT-TTA-TA
153 -TGAAA-G-CCTTATTACTC
* * * * * * * * * * **
345167 GTTTCTCAA-GCTTTTGAAAGTCTTATCATTCG-CTTTAA-ATGG-TTTTATATACTCATAATTG
1 GCTT-TAAATGGTTTT-ATATTCTCATAATT-GATTTTAAGTTGGATTTT-TTTA--CATTTTTG
* * * ** * * * * * * * *
345228 ATTTTAACT-TAG-ATTTTTTTACATTTCTA-GTTA-AAATATGCCCTA-CTTAAATGTC-TGTC
60 -GTTAAAATAT-GTA-TAATTGA-ATGTCTACCTTAGAAACATG---AAGC--AAAAGCCAT-CC
* ** *** * * * ****** *
345287 -TT---GAGAAACGTGAAGCAAAAGCCA-TCCATGGGAGAAAAAGTCCATT-TATAGTC
115 ATTGGAGAGAAAAGTCCATTTATAGTCACT-CAAGCCTTTGAAAG-CC-TTAT-TACTC
* * ** ** ** ** **
345340 AC--TCAA-GCCTTTGGAAGC-C-TAATT-ATTTGCTTAAAATGG-TTTTATACTCT-CATAATT
1 GCTTTAAATGGTTTTATATTCTCATAATTGA-TT--TTAAGTTGGATTTT-T--T-TACATTTTT
* * * * * * * * ** * * * *
345397 GATTTTAAGT-TGGATTTATTTTTACATTTTTGGC-TA-AAATATGCTA-TAATTGAATGTC-TA
59 G-GTTAAAATAT-G-TATA-ATTGA-ATGTCTACCTTAGAAACATG-AAGCAA---AA-GCCAT-
*** * * * * ***** *
345457 CC-TT--A-AGAAACA-T-CAGGAAAAAGCCACCCATGGGAGAGAAAAGTTCATTTATAGTCACT
113 CCATTGGAGAGAAA-AGTCCA-TTTATAGTCACTCAAGCCTTTG-AAAG--C-CTTAT--T-ACT
345516 C
169 C
* * * * * * * **
345517 AAGCTTTGAAAACCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGG
1 --GCTTT----A----A--A-TGGTTTTATAT--TCTCATA--AT--TGATT--TTAA--GTT-G
* * * * * *
345582 GTTTTTTTTACATTTTTGGTTAAAATATGCTATAATAGAATGTCTGCCTGAGGAAACGTAAAGCA
42 GATTTTTTTACATTTTTGGTTAAAATATG-TATAATTGAATGTCTACCTTA-GAAACATGAAGCA
* * *
345647 AAAGCCATCCACTAGAGAGAAAAGTCCATTTATAGTCACTTAAGCCTTTGAAAGCCTTATTACTC
105 AAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
345712 ACTTTGAATGGTTTTATATCCTCATAATTGATTTTAAGTTAGA-TTTTTTACATTTTTGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * * * * *
345776 ATATGCTATTACTAAATGTCAACCTCAGGAAACGTGAAGCAAAAGTCATTCATTAGAAAGAAAAG
66 ATATG-TATAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
*
345841 -CCTATTTATAGTCACTCAAGCCTTTGAAAGCTTTATTACTC
129 TCC-ATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
345882 GTTTTAAATGGTTATATATTCTCATAACTAATTTTAAG-TGAGATTTTTTT-TATTTTTGG-TAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTG-GATTTTTTTACATTTTTGGTTAA
* * * * * * * *
345944 AATATTCTATTACTT-CATGTCTGCCTTGGAAAATATGAAGCAAAAGCCATCCATGGGTGAGAAA
65 AATA-TGTA-TAATTGAATGTCTACCTTAG-AAACATGAAGCAAAAGCCATCCATTGGAGAGAAA
* * * * *
346008 AGTCCATTTATAGTTATTTAAGCATTTAAAAGCCTTATTACTC
127 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
346051 ACTTTAAATGGTTTTATACTCTCATAATTGA--TTAAGTTGGATTTTTTTATATTTTTTGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * * *
346114 ATATGCTATAATTGAACGCCTGCCTCAAGAAACGTGAAGCAAAAGCCATCTATGGGATAGAAAAG
66 ATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
346179 TCCATTTATTA-TCACTCAAGCTTTTGAAAGGCTTATTACTC
129 TCCATTTA-TAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* ** * *
346220 GCTTTAAATGGTTTTATATTCTCATAATTAATTTTAAGTTAAATTTTTTTATATTTATGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * * ** *
346285 ATAT-TCTAGAATGAATATTTTCC-TCGAAAAATGTGAAGCAAAAGCCATCTGTGGGAGAG-AAA
66 ATATGTATA-ATTGAATGTCTACCTTAGAAACA--TGAAGCAAAAGCCATCCATTGGAGAGAAAA
**
346347 GTCCATTTATAGTCACTCAAATCTTTGAAAAGCCTTATTACTC
128 GTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
* * * * * * * * *
346390 GCTCTAAAT-GATTTATATTCTCGTAATTGATGTTAAGTTCGATATTTTTACACTTTAGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * ** * ** *
346454 ATATTCTAGAATTTAATATTTTTCTCAAGAAATGTGAAGCAAAAGCCATCC-GTGGAAGAGAAAA
66 ATA-TGTATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAAA
* ********
346518 GTTCATTTATAGTCACTCAA-CCNNNNNNNNNNCCTTATTACTC
128 GTCCATTTATAGTCACTCAAGCC--TTTGAAAGCCTTATTACTC
* * * * *
346561 GCTTTAAATGGTTTTATAATGTCATAATTGATTTTAAGTTGGACTTTTTCACATATTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * ** * * * *
346626 ATATTCTAGAATTGAATGT-TATCCTCGAGAAATGTGAAGCAAAAACCAGCCATGGGAGGGAAAA
66 ATA-TGTATAATTGAATGTCTA-CCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * *
346690 GTCCATTTTTAATCACTCAAGCCTTTGAAAAGCCTTATTACTT
128 GTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
** *
346733 GCTTTAAATGGTTTTATATTCTCATAATTGAAGTTAAGCTGGATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
346798 ATATGCAATAATTTAATGTCTACCTCTAGAAACATGAAGCAAAACCCATTCATTAGAGAGAAAAG
66 ATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
*
346863 TCCATTTATAGCCACTCAAGCCTTTGAAAGCCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * *
346904 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATATTTTTACATTTTTAGGTTAG
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTT-GGTTAA
* * * * ** * * *
346969 AATATGCTATAATTGAATGTTTGCCTTGGTAAACGTCCAGTAAAAGCTATCCATCGGAGAGAAAA
65 AATATG-TATAATTGAATGTCTACCTTAG-AAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
*
347034 GTCCATTTATAGTCACTCAAGCCTTTGGAAGCCTTATTACTC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * **
347076 GCTTTAAATGGTTTTATATTATCATAATTGATTTTAAGTTGGATTTTTTTTCATTTTTTCTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* *
347141 ATATGCTATAATTGAACGTCTGA-CTCAAGAAACATGAAGCAAAAGCCATCCATT-GAGAGAAAA
66 ATATG-TATAATTGAATGTCT-ACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * *
347204 GTCCATTTATTA-TCACTCAAGGCTTTGAAAGGCTTATTGCTC
128 GTCCATTTA-TAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* *
347246 GCTATAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGA-TTTTTTATATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * ** * * ** * *
347310 ATATTCTAGAATTGAACATTTGCCTTCAGAAATGTGAAGGAAAAGCCATCCATAGGAGAGAAAAG
66 ATA-TGTATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* ** *
347375 TCCATTTATAGTCACTCATGCCTCTCAAAAGTCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCT-TTGAAAGCCTTATTACTC
* * * *
347417 GCTTTAAATGGTTTTATATTCTCCTAA-TGAAATTTAAGTTGGATTTTTTT-TATTTTTGTTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTG-ATTTTAAGTTGGATTTTTTTACATTTTTGGTTAA
* * * *
347480 AATATGCAATAATTTAATGTCTACTTCTAGAAACATGAAGCAAAACCCATCCATTGGAGAGAAAA
65 AATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* *
347545 GTCTATTTATAG-CTACTCAAGCCTTTAAAAGCCTTATTACTC
128 GTCCATTTATAGTC-ACTCAAGCCTTTGAAAGCCTTATTACTC
* * *
347587 GCTTTAAATTGTTTTATATTCTCATAATGGATTTTAAGTTGGATTTTTTTACATTTTTGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * *
347652 ATATGTTATAATTGATTGTTTGCCTTAACAAACATGAAGCAAAAGCCATCCATTGGCA-AG-AAA
66 ATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAAA
* *
347715 GTCCATTTATAGTCACTCAAGCCTTTGAAAGGCTTATTGCTC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* ** ** * ***
347757 GCTTTAAATGATTTTATATTCTCATAATTGATTTTAAGCAAGTTTTTTTTTATATTTTTCACTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAG-TTGGATTTTTTTACATTTTTGGTTAA
* * * * * * * *
347822 AATATGCCATAATTGAACGTTTGCATCGAGAAACATGAAGTAAAAGCCATCCATGGGAGAGAAAA
65 AATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* **
347887 GTCCATTTATAGTCACTTAAGCCTTCAAAAAGCCTTATTACTC
128 GTCCATTTATAGTCACTCAAGCCTT-TGAAAGCCTTATTACTC
** * *
347930 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTGCGTTGGA-TATTTTACATTTTTGGTTATA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * *
347994 ATATTCTAGAATTGAAAT-T-TACCTTGATAAACATGAAGCAAAAGCCATCCATGGGAGA-AAAA
66 ATA-TGTATAATTG-AATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
*
348056 GTCCATTTATAATCACTCAAGCCTTTGAAAAGTCC-TATTACTC
128 GTCCATTTATAGTCACTCAAGCCTTTG-AAAG-CCTTATTACTC
* * * * *
348099 GCTTTAAATGGTTATATATTGTTATAATTGATTTTAAGTTGGAATTTTTTACATTTTAGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * *
348164 ATATGCTATAATTGAATGTTTACCTTGAGAAACATGAAGCAGAAGCCATCCATTAGAGAGAAAAG
66 ATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
348229 TCGATTTATAGTCACTTAAGCCTTTGAAAGCCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
348270 GCTTTGAATGATTTTATATACTCATAATTGATTTTAAGTTGGATTTTTTTAGATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
348335 ATATGCAATAATTGAATGTCTACCTCGAGAAACATGAAGCACAAGGCA-CTCATTGGAGAAAAAA
66 ATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATC-CATTGGAGAGAAAA
348399 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
348441 ACTTTAAATGATTTTATATTCTCATAATTGATTTTAAGTTTGATTTTTTTATATTTTTAGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
*** * * * * * ** * * *
348506 ATATGCTATTGCTGAATGTTTGCCTTATGGAACTTGAGGCAAATCCCAACTATTAGAGTA-AAAA
66 ATATG-TATAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAG-AGAAAA
* * *
348570 GTCCATTTATAGTCACTTAAGCATTTAAAAGCCTTATTACTC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * * * *
348612 ACTTTAAATGATTTTATATTTTTATAATTGATGTTAAGTTGGATATTTTTACAATTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * ** * * *
348677 ATATATTATAATTGAATGTTTGTCTCAAGAAACGTGAAGCAAAAGCCATCCATGGGAGAGAAAAG
66 ATAT-GTATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * *
348742 TCCATTTATGGTCACTCAAGCCTTTCAAAAACCTTACTACTC
129 TCCATTTATAGTCACTCAAGCCTTT-GAAAGCCTTATTACTC
* * ** * **********
348784 GCTTTAAATGGTTATATAGTCTTGTAATTGATTTTAAGTTGGAATTTTTNNNNNNNNNNGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
348849 ATATGCTATAATTGAATGTCTACCTCATGAAACATGAAGTAGAAGCCATCCATTAGAGAGAAGAG
66 ATATG-TATAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
348914 TCGATTTATAGTCACTCAAGCCTTTGAAAGCCTAATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * * * *
348955 GCTTTTAATGGTTTTATATACTCATAATTGATTTGAAGTTAGATTTGTTAAGATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
*************************
349020 ATATGCTATAATTGAATGTCT-CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 ATATG-TATAATTGAATGTCTAC-----------------CTTAGAAACATGAAGCAAAAGCCAT
*********************************************************
349084 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
113 CCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
********************************************** * ** * *
349141 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCT-CATAATTGATTTTA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTG-GTTAA
* ** * * * * * ** ** **** * *
349205 AGT-TAG-ATTTTTTTATATTTTTA-TTTA-AAATATGTTATTACTCAATGTTTTCCTTGGGAAA
65 AATAT-GTA-TAATTGA-ATGTCTACCTTAGAAACATG--A-AGCAAAAGCCATCCATTGG---A
* * * *
349266 CGTGAAGCAAATGCCATCCATTTGAGTGAAAACTCCATTTATAGTCACTTAAGCATTTGAAAGCC
121 ---G-AG-AAAAG---TCCATTT-A-T----AGT-CACTCA-AG---C-----C-TTTGAAAGCC
349331 TTATTACTC
161 TTATTACTC
* * * * *
349340 GCTCTAATTGATTTTATATTCTCATAATTGATGTTAAGTTGGATATTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * ** ** * * *
349405 AAAT-TTTGGAGTTGAACT-TTTTTCTTAAGAAATGTGCAGCTAAAGCCATCC-GTGGCAGAGAA
66 ATATGTAT--AATTGAA-TGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAA
*
349467 AAGTCCATTTATAGTCACTCAACCCTTTGAAAAGCCTTATTACTC
126 AAGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
* * *
349512 GCTTTAAATGGTTTTATAGTT-TCATAATTGATTTTAAGTTAGATTTTTTGACATTTTTGGCTAA
1 GCTTTAAATGGTTTTATA-TTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAA
* * * * * *
349576 AATAT-TATAGAATTGAATGT-TATCCTCAAGAAACATGAAGTAAAAACCAGCCATGGGAGAAAA
65 AATATGTAT--AATTGAATGTCTA-CCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAA
*
349639 AAGTCCATTTATAGTCACTCAAGCCTTTGAAAAGCCTTATTACTT
126 AAGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
* * *
349684 GCTTTAAATGGTTTTATATTCTCATAATTGAATTTAAGCTGGATTGTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * *
349749 ATATGCA-AGGATTTATTGTCTACCTCT-GAAAACATGAAGTAAAACCCATCCATTAGAGAGAAA
66 ATATGTATA--ATTGAATGTCTACCT-TAG-AAACATGAAGCAAAAGCCATCCATTGGAGAGAAA
* *
349812 AGTCCATTTATAGCCACTCAAGCCTTTGAAAGCCTTATTTCTC
127 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
349855 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAATTAGATATTTTTACATTTTAGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * ** *
349920 ATATGCTATAGTTGAATGTTTACCTTGGGAAACATGAAGCAAAAGCCATCCATCAGAGAGAAATG
66 ATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
349985 TCCATTTATAGTCACTCAAGCCTTTGGAAGCCTTATTGCTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * ** **
350026 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAATTAGATTTTTTTTTATTTTTTCTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
350091 ATATGCTATAATTGAACGTCTGCCTCAAGAAACGTGAAGCAAAAGCCATCCATGGGATATAAAAG
66 ATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * *
350156 TCCATTTATTA-TCACTCAAACCTTTGAAAGGCTTATTGCTC
129 TCCATTTA-TAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* ** * * *
350197 G-TTATAAATTGTTTTATATTCTTGTAATTGATTTTAAGTTAGATTTTTTTATATTTTTAGTTAA
1 GCTT-TAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAA
* * ** * * ** * * *
350261 AATATCTAGAATTGAACCTTTGCCTTGAGAAATGTGAAGGAAAATCCATCCATGGGAGAGAAAAG
65 AATATGTATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* **
350326 TCCATTTATAGTCACTTAAGCCTCTCAAAAGCCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCT-TTGAAAGCCTTATTACTC
* * * * * *
350368 ACTTTAAATGATTTTATATTTTCATAATTGAATTTAAGTTAGATTTTTTTACATTTTTGTTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * *
350433 ATATGTAATAATTTAATGTCTACCTCTGGAAACATGAAGCAAAACCCATCCATTGGAGAGAAAAG
66 ATATGT-ATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * ***
350498 TCCATTTATAGTTACCCAAGCCTTTAAAATTTTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* **
350539 GCTTTAAATTGTTTTATATTCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * *
350604 ATATGTTATAATTGATTGTTTGCCTTAAGAAACATGAAGCAAAAGCCATCCATTGGTA-AG-AAA
66 ATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAAA
* *
350667 GTTCATTTATAGTCACTCAAGCCTTTGAAAGGCTTATTACTC
128 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * ** ** **
350709 GCTTTAAGTGGTTTTATATTCTCATAATTAATTTTAAGTAAG-TTTTTTTATTTTTTTTATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
350773 ATATGTCATAATTGAAGGTTTTCCTCGAGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAG
66 ATATGT-ATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* ** *
350838 TCCATTTATAGTCACTTAAGCCTTCCAAAAGCCTTA-TACTT
129 TCCATTTATAGTCACTCAAGCCTT-TGAAAGCCTTATTACTC
** * * **
350879 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTGCGTTGGA-TATTTTGCATTTTTCATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * **
350943 ATATTCTAGAATTAAAAT-T-TACCTTGAGAAACTTGAAGCAAAAGCCATCCATAAGAGAGAAAA
66 ATA-TGTATAATT-GAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
*
351006 GTCCATTTATAGTCACTCAAGCCTTTGAAAAGCCTTATTACTT
128 GTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
* ** * * * *
351049 GCTTTAAATGGTTATATATTCTTGTAATTGATTTTAAGTTAGAATTTTTTACATTTTAGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * *
351114 ATATGCTATAATTGAATGTCTACATCAAGAAACATGAAGCAGAAGCCATCCATTGTAGAGAAAAG
66 ATATG-TATAATTGAATGTCTACCT-TAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
351179 TCAATTTATAGTCACTCAAGCCTTTGAAAGTCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * * * *
351220 TCTTTAAATGGTTTTATATACTCATAATTGATTTTTAGTTAGATTTTTTTAGATTTTTGATCAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
351285 ATGTGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCACAAGGCATTCATCGGAGAGAAAAG
66 ATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
351350 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * **
351391 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAATTTGGATTTGTTTATATTTTTAATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * * * * * **
351456 ATATGCTATTACTGAATGTTTGCCTTATGGAACCTAAAGCAAATGCCATCTATTAGAGTCAAAAG
66 ATATG-TATAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * * *
351521 TCCATTTATAGTAACTTAAGCATTTAAAAGCCTTATTATTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
351562 GCTCTAAATGATTTTATATTCTCATAATTGATGTTAAGTTGGATATTTTTACACTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * ** *
351627 ATATATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCAAAAATCATCCAATGGAGAGAAAAG
66 ATAT-GTATAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
** * *
351692 TATATTTATAGTCACTCAAGCCCTAGAAAGCCTTATTACTC
129 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* *
351733 GCTTTAAATGGTTTTATATTCTCATAATTGATGTTAAGTTGGATTTTTTTACATTTTGGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * *
351798 ATATGTTATAATTGAATGTTTGCCTTGAGAAACATGAAGCAAAAGTCATCCA-TGGA-AGAAAAA
66 ATATG-TATAATTGAATGTCTACCTT-AGAAACATGAAGCAAAAGCCATCCATTGGAGAG-AAAA
* * * *
351861 GGTGCATTTATAGTCACTCAATCCTTTGAAAGACTTATTAGTC
128 -GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* *
351904 GCTTTAAATGGTTTTATTTATT-T-ATAATTGATTTTAAGTTAGATTTTTTTATATTTTTGGTTA
1 GCTTTAAATGGTTTTA--TATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTA
* * * * * * *
351967 GAATATGCTATACTTGAATGTCTGCCTCAGGAAACGTGAAGCAAAAGCCATCCAATGAAGAGAAA
64 AAATATG-TATAATTGAATGTCTACCTTA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAA
** * *
352032 AGAACATTTATAGTCACTCAAGCATTTGGAAGCCTTATTACTC
127 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
352075 ACTTTAAAAGGTTTTATATTTTCATAATTGATTTTAACTTAGATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
352140 ATAT
66 ATAT
352144 TCTATAGTTA
Statistics
Matches: 9547, Mismatches: 2389, Indels: 1068
0.73 0.18 0.08
Matches are distributed among these distances:
167 19 0.00
168 181 0.02
169 1192 0.12
170 2156 0.23
171 3895 0.41
172 1545 0.16
173 176 0.02
174 21 0.00
175 1 0.00
176 7 0.00
177 5 0.00
178 9 0.00
179 14 0.00
180 10 0.00
181 16 0.00
182 15 0.00
183 6 0.00
184 8 0.00
185 12 0.00
186 20 0.00
187 1 0.00
188 16 0.00
189 1 0.00
190 5 0.00
191 20 0.00
192 9 0.00
193 24 0.00
194 13 0.00
195 6 0.00
196 4 0.00
197 9 0.00
198 14 0.00
199 31 0.00
200 16 0.00
201 24 0.00
202 36 0.00
203 3 0.00
204 3 0.00
205 4 0.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.38
Consensus pattern (169 bp):
GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
ATATGTATAATTGAATGTCTACCTTAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTC
CATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
Found at i:343412 original size:342 final size:342
Alignment explanation
Indices: 339503--352399 Score: 9698
Period size: 342 Copynumber: 37.5 Consensus size: 342
339493 AGTCACCCAA
* * *
339503 GCTTTAAATGATTTTATATTCTCATAACTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * * *
339568 ATATGCTATAATAGAGTGTCTGCCTTAGGAAACGTAAAGCAAAAGCCATCCACTAGAGAGAAAAG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * *
339633 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCTCTCTAAATTGTTTTATATTCTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * * * * * *
339698 TAATTAATTTTAAGTTGGA-TTTTTTATATTTTTGGTTAAAATATGCTATTACTAAACGTCAGCC
196 TAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
* ** * * * *
339762 CTAGGAAATGTAAAGCAAAAGCCATTCAT--TAGAGAAAAGTCGATTTATAGTCACTCAAGCCTT
261 TTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTT
*
339825 CGAAAGCCTTATTACTC
326 TGAAAGCCTTATTACTC
* * **
339842 GCTTTAAATGGTTTTATATTCCCATAACTGATTTTAAGTGGGATTGTTTTT-CATTTTTGGTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATT-TTTTTACATTTTTGGTTAA
* * * * * * * * * * *
339906 AATATTCTTTTACTT-CATGTCTACCTTAGGAGATGTAAAGAAAAAGCCATCCATGGGAGAGAAA
65 AATATGC-TATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAA
339970 AGTCCATTTATAGTCACTCAAGCCTTTGAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
129 AGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * * * * * *
340035 TGATAATTCAATTTAAGTTAGATTTTTTTACATTTTTGATTAAAATATG-TAATAATTTAATGTT
193 TCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCT-ATAATTGAATGTC
* * * * * ** *
340099 TACCTCTA-GAAACATGAAGCGAAACCCATCCATTGGAAAGAAAAGTTTATTTATAGCCACTCAA
257 TGCCT-TAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAA
* * * *
340163 GCCATTGAGAGCCCTATTATTC
321 GCCTTTGAAAGCCTTATTACTC
* * * *
340185 GCTTTACACGGTTTTATATTTTCATAATTGATTTTAAGTTAGATTTTTTTATATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * ** * * * *
340250 ATAT-ATCATAATTGAACGTCTATC-TAGGGAAATGTAAAGAAAAAGCCA-CC-TATGGTAGAGA
66 ATATGCT-ATAATTGAATGTCTGCCTTA-AGAAACGTGAAGCAAAAGCCATCCAT-TGG-AGAGA
* * * * * *
340311 AATGTCTATTTATAGTTACTCAAGCCATTAAAAGCCTTATTATTCGCTTTAAATGGTTTTATATT
127 AAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATT
* *
340376 CTCATAATTGATTTTAAGCTGGGTTTTTTTTACATTTTTTGGTTAAAATATGCTATAATTGAATG
192 CTCATAATTGATTTTAAG-TTGGATTTTTTTACA-TTTTTGGTTAAAATATGCTATAATTGAATG
* * * * * ** ** *
340441 TTTGCCTCA-AAAACCTGAAGTAAAAGCCATCCATTAGAGAGAAAAGTGAATTTATAATCACTCA
255 TCTGCCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCA
* * *
340505 AGCCATTGAAAGCCCTATTACCC
320 AGCCTTTGAAAGCCTTATTACTC
* * **
340528 GCTTTAAATAGTTTTATATTCTCATAATTGATTTTAAATTAGATTTTTTTTACATTTTTAATTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGA-TTTTTTTACATTTTTGGTTAA
* ** ** * * * **
340593 AATATGCTATAATTGATTGTCTATCTTGGGAAATGTGAAGTAAAAACCATCCATTATAGAGAAAA
65 AATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * * * *
340658 GTCCATTTATAGTGACTCAAGCCTTTGGAAGCCTTATTACACGCTTTAAATTGTTTTGTATTCTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * * * *
340723 ATAATTGATTTTTAGTTAGATTTTTTTACATTTTTGGTTAAAATATGTTGTAATTGAATGTTTGT
195 ATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
* * * ** *
340788 CATGGGAAACGTGAAGCAAAAGCCATCCACT-ACAGAGAAAAGTACATTTATAGTCACTCAAGCC
260 CTTAGGAAACATGAAGCAAAAGCCATCCA-TGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
*
340852 TTCGAAAGCCTTATTACTC
324 TTTGAAAGCCTTATTACTC
* *
340871 ACTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTCGATTTTTTT-CATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * ** * * * * * *
340935 ATATGCTATTACTGAATGTTTACCTCGAGAAACATGAAGAAAAATCTATCCATCTAG-GATAAAA
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCAT-TGGAGAGAAAA
* * * * * * * * *
340999 GTCTATTTATAGTCACTCGAGCATTTAAAAGCCTTATTCCACGCTTTAAATAGTTTCATATTCTT
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * *
341064 ATAATTGATTTTAAGTTGGAATTTTTTAAATTTTTGGTTAAAA-ATTGCTAGT-ACTGAGTGTCT
195 ATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATA-TGCTA-TAATTGAATGTCT
* * * * **
341127 ACTTTAGGAAACATAAAGCAAAAGCCGTCCATTAGAGAGAAAAGTCCATTTATAGTCACTCAAGC
258 GCCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
* *
341192 CTTTAAAAGCCTTATTACAC
323 CTTTGAAAGCCTTATTACTC
* * *
341212 TCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTT-CTATTTTTTGTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTAC-ATTTTTGGTTAA
* * ** * *
341276 AATATACTATAATTG-ATCGTCT-AC-TCCGAAATGTGAAGCAAAAGCCATCCATTGTAGAGAAA
65 AATATGCTATAATTGAAT-GTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAA
* ** * *
341338 AGTCCATTTATAATCACTCAAATCTTTGAAAGCTTTATTA-TACGCTTTAAATTG-TTTATATTC
129 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACT-CGCTTTAAATGGTTTTATATTC
* ** * ** * *
341401 TCATAATTGATTTTAGGTTAAATTTTTTAACATTTTTGGTTAAAATATATTGTAATTAAATGTCT
193 TCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCT
* * * *
341466 GCCTTGGGAAACATGAAGCAAAAGCCATCCATTGGAGAAAAAAGTACATTTATAGTCACTCAAGC
258 GCCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
341531 CTTTGAAAGCCTTATTACTC
323 CTTTGAAAGCCTTATTACTC
* *
341551 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAATTTTTTACA-TTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * *
341615 ATATGCTATTACTAAATGTCTGCCTCT-GGAAACGTGAAG-AAAAGCCATCCATTAGG-GAGAAA
66 ATATGCTATAATTGAATGTCTGCCT-TAAGAAACGTGAAGCAAAAGCCATCCATT-GGAGAGAAA
** * * * * * * *
341677 AGTATATTTATAGTCACTCGAA-CTTTTGAAAGCCTTATTCCACTCTTGAAATAGCTTTATATTC
129 AGTCCATTTATAGTCACTC-AAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * * * * * ** *
341741 TCATAATTGATTTTAATTTAGAATTTTTAAAATTTTTGATTAAAATATTTTATAATCGAATG-CT
193 TCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTC-
* * *
341805 TGCCTTAGGAAACATGAAGCAAAAGCCATCTATTGGCGAGAAAAG-CCATTTATAGTCACTCAAG
257 TGCCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
* * *
341869 CCTTTGAAAGCATGATTAATC
322 CCTTTGAAAGCCTTATTACTC
* * * * **
341890 TCTTTAAATGGTTTTATATTCCCATAATAGATTTTAAGTT-GAAATTTTTTACATTTTTCATTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAG-ATTTTTTTACATTTTTGGTTAA
** * ** * * *
341954 AATATATTATAATTGAAAGTCTATCTCTGA-AAACCTGAAGTAAAAGCCATCCATTGGAGAGAAA
65 AATATGCTATAATTGAATGTCTGCCT-TAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAA
** * * * * *
342018 AGTGAATTTATAGTCACTCAAGCCATTAAAAGCCCTATTACTCGTTTTAAATGATTTTATATTCT
129 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* * * **
342083 CATAATTCATTTTAAGTTGGATTTTTTTATATTTTTGGTTAAAATATGCTATAATTGATTGTCCA
194 CATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTG
** *** *
342148 CCTT-GAGAAATGTGAAGCAAAAGCCATCCATTATAGAGAAAAGTCTATTTATAGTCACTCAAGC
259 CCTTAG-GAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
* ** *
342212 CTTTAAAAGTGTTATTACAC
323 CTTTGAAAGCCTTATTACTC
* * * *
342232 GCTTTAAATTGTTTTATATTCTCATAATTGATTTTCAGTTAGATTTTTTTACATTTTTTGTGAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
342297 ATATGTTGTAATTGAATCTTTGCCTTAGGAAACGTGAAGAAAAAGCCATCCATTAGAGAG-AAAG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * * *
342361 TACATTTATAGTCGCCCAAGCCTTTGAAAGCCTTATTACTTGCTTTAAATGATTTTATATTCTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * * * * * *
342426 TAATTGATTTTAAATTGAAATTTTTTACA-TTTTGGTTAAAATATGCTATTACTAAATGTCTGCA
196 TAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
* * * * * * * *
342490 TCAAGAAACATGAAGAAAAAGTCATCCATTAGGGA-A-AAAAGTCTATTTATATTAACTCAAGCA
261 TTAGGAAACATGAAGCAAAAGCCATCCA-T-GGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
*
342553 TTTGAAAGCCTTA-TCCAT-
324 TTTGAAAGCCTTATTAC-TC
* * **
342571 ACTTTAAATGGTTTTATATTCTCATAATTCATTTTAAGTT-GAAAATTTTTA-ATTTTTGGTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAG-ATTTTTTTACATTTTTGGTTAA
* * * * *
342634 AATATGCTATTACTGAATGTCTGCCATT-GGAAACGTGAAGCAAAAGCCATCCGTTAGAGAGAAA
65 AATATGCTATAATTGAATGTCTGCC-TTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAA
* * *
342698 AGTCCATTTATGGTCACTCAAGCCTTTAAAAGCCTTATTACTCGCTTTAAATAGTTTTATATTCT
129 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* * * * * * *
342763 CATAATTGATTTTAAGTTGGATTTTTTAAAATTTTTTGTTCAAATAAGTTGTAATTGAATG-CTT
194 CATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTC-T
* * * * * *
342827 GCCTTGGGAAACATGAAGCAAAAGTCATCCATTGGTA-TGAAAAG-CCATTTATAGTGACTTAAG
258 GCCTTAGGAAACATGAAGCAAAAGCCATCCA-TGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
* *
342890 CCTTCGAAAGCTTTATTACTC
322 CCTTTGAAAGCCTTATTACTC
* * * * * *
342911 ACTCTAAATGGTTTTATATTCTCATAATAGATTTTAAATTGAAATTTTTTGTATA-TTTT-GTTA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTT-AGATTTTTT-TACATTTTTGGTTA
* * * *
342974 AAATATGCTATAATTGAATGTC-GTCCTTAGGAAACATGAAGTAAAAGCCATCCATTGGAGAAAA
64 AAATATGCTATAATTGAATGTCTG-CCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAA
** * * * ** *
343038 AAGTTAATTTATAGTCACTCAAGCCATTGAAAGCCCTATTAGTCGCTTTAAACAGATTTATATTC
128 AAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * * * * *
343103 TCAAAATTGATTTTAAGTTGGATTTTTTTATATTTTTGCTTTAAATATACTATAATTGAACGTCT
193 TCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCT
* * *
343168 ACCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGACAAAAGTCTATTTATAGTCACTCAAGC
258 GCCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
* * *
343233 CATTGAAAGCCTTATTATTT
323 CTTTGAAAGCCTTATTACTC
* * * *
343253 GCTTTAACTGGTTTTATATTCTCATAATTGATTTTAAGCTAGATTTTTTTATATTTTTAGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * ** * ** *
343318 ATTTG-TGATAATTGAATGTCTGCCTCAAGAAATATGAAGCAAAAGCCATCTAACGGAGTGAAAA
66 ATATGCT-ATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * **
343382 G-CATATTTATAGTCACTCAAGCCTTTGAAAGCCTTAGTACTCATTTTAAATGGTTTTATATTCT
130 GTC-CATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* * * * * * *
343446 CATAATTGATTTTATGTTGGA-TTTTTTGCATGTTGGGTTAAAATATGCTATAATTCAATATCTA
194 CATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTG
* ** *
343510 CCTT-GTGAAACGTGAAGCAAAAGCCATCCATTAGAGAGAAAAGTCCATTTATAATCACTCAAGC
259 CCTTAG-GAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
* *
343574 CTTTGAAAGCTTTATTGCTC
323 CTTTGAAAGCCTTATTACTC
* ** * * * *
343594 GTTTTAAATAATTTTATATTCTGATAATTAACTTTAAG-TAGGATTTTTTTACATTTTTAG-TAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTA-GATTTTTTTACATTTTTGGTTAA
* * ** * * *
343657 ATATATGCTATAATTGAACGTTTGCCTTGGGAAACATGAAGCAAAAGCTATTCA-TGGAAGAGAA
65 A-ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGG-AGAGAA
* *
343721 AAGTCCATTTATAATCACTTAAGCCTTTGAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATT
128 AAGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTCGCTTTAAATGGTTTTATATT
* ** * * ** *
343786 CTTATAATTGATTTTAAGTTGGA-TTTTTTACATTTTTGACTAAAATATTCTAGAATTGAACATT
192 CTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTC
* * * * * * * * *
343850 TACCTCAAGAAACGTGAAG-TAAAGCTATCCATGGCAGAGAAAAGTCTATTTATAGTTACTCAAG
257 TGCCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
343914 CCTTTG-AAGACCTTATTACTC
322 CCTTTGAAAG-CCTTATTACTC
* * * *
343935 GCTTTAAATGGTTTTATACTCTTATAATTGATTTTAAGTTAGATTTTTTTACACTTTTGGTCAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * * *
344000 ATATGTTATAATTGAATG-CTTGCCTT-GGTAAGCATGAAGC-AAAGCCATCCTTTAGTA-AGAA
66 ATATGCTATAATTGAATGTC-TGCCTTAAG-AAACGTGAAGCAAAAGCCATCCATT-GGAGAGAA
* * *
344061 AAG-CCATTTATAGTCACTCAAGCTTTTGAAAACCTTATTACTCACTTTAAATGGTTTTATATTC
128 AAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * * *
344125 TCATAATAGATTTTAAGTTCG-TATTTTTTACATTTTTGATTAAAATATACTATAATTGAATGT-
193 TCATAATTGATTTTAAGTTGGAT-TTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTC
** * **************** * *
344188 TTACTGTAGGAAACGTNNNNNNNNNNNNNNNNATGGGAGA-AAAAGTCTATTTAAAGTCACTCAA
257 TGCCT-TAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAA
* *
344252 -CACCTTGAAAGACTTATTACTC
321 GC-CTTTGAAAGCCTTATTACTC
* * * * *
344274 GCTTTAAATGGTTTTATATACTCATAATTGATTTTAATTTGGATTTTTTAAAATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * ** * **
344339 ATATGTTATAATTGAATG-CTTGGCTTGGGAAACATGAAGCAAAAGCCATCCATTTTCA-AGAAA
66 ATATGCTATAATTGAATGTC-TGCCTTAAGAAACGTGAAGCAAAAGCCATCCA-TTGGAGAGAAA
* * * *
344402 AGT-TATTTATAGTCACTCAATCCTTTGAAAGCCTTATTACTCGCTTTCAATAGTTTTATATTCT
129 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* * *
344466 CATAATTGATTTTAAGTTAGATTTTTTTTTACATTTTTGGTTAAAGTATGCTATTATTGAATGTC
194 CATAATTGATTTTAAGTTGGA--TTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTC
* * ** * * ** *
344531 TGTCTTAAGAAATGTGAAACAAAAGCCATCAATTAGAGAGAAAAGTCCATTTATAGTGACTCAAG
257 TGCCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
* **
344596 TCTTTGAAAGTATTATTACTC
322 CCTTTGAAAGCCTTATTACTC
* ****************
344617 GCTTTAAATGGTTTTATATTCTCATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 GCTTTAAATGGTTTTATATTCTCATAATTGAT-----------------TTTAAGTTAGATTTTT
*****************************************************************
344682 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
49 TTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCA
********************************************************** ****
344747 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAAA
114 TCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAA
* * * * * **
344812 AAGTCTATTTAAAGTCACTCA-ACACCTTGAAAGACTTATTACTCACTTTAAATAGTTTTATAGT
179 ATG-GT-TTTATA-T-TCTCATA-A--TT----GA-TT-TTA---A-GTTGGAT--TTTT-T--T
* *** * * * * * * *** **
344876 CTCATAACTGATTTTAAGT-TG-GATTTATTTACATTTTAGTTAAACTATATTATAATTGAACGT
222 -ACATTTTTG-GTTAAAATATGCTA-TAATTGA-A---T-G-T---CTGCCTTAGGA---AAC--
* * * **** * * * *
344939 CTGCCTCAAGAAACATGAAGCAAAAGTCATCCATTGGAGAGAAAAGTCAATTTATAGTCGCTTAA
270 ATG----AAG---CA-AAAGCCATCCA------TGGGAGAGAAAAGTCCATTTATAGTCACTCAA
* *
345004 ACTTTTGAAAGCCTTATTACTC
321 GCCTTTGAAAGCCTTATTACTC
* * * *
345026 ACTTTAAATAGTTTTATATGCTCATAATTGAATTTTAAGTTGGATTTTTTTACATTTTTGGTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTG-ATTTTAAGTTAGATTTTTTTACATTTTTGGTTAA
* * * * *
345091 AATATGCTATAATTGAATGTCTACCTTGAGAAACGTAAAGCAAAAGCCATCCATAGGAGAGAAAG
65 AATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAA
** * * * * *
345156 GTCCATTTATAGTTTCTCAAGCTTTTGAAAGTCTTATCATTCGCTTTAAATGGTTTTATATACTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * * ** * * *
345221 ATAATTGATTTTAACTTAGATTTTTTTACATTTCTAGTTAAAATATGCCCTACTTAAATGTCTGT
195 ATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
*
345286 CTT-GAGAAACGTGAAGCAAAAGCCATCCATGGGAGA-AAAAGTCCATTTATAGTCACTCAAGCC
260 CTTAG-GAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
* * * *
345349 TTTGGAAGCCTAATTATTT
324 TTTGAAAGCCTTATTACTC
* * * *
345368 GCTTAAAATGGTTTTATACTCTCATAATTGATTTTAAGTTGGATTTATTTTTACATTTTTGGCTA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGA-TT-TTTTTACATTTTTGGTTA
* * * * * * *
345433 AAATATGCTATAATTGAATGTCTACCTTAAGAAACATCAGGAAAAAGCCACCCATGGGAGAGAAA
64 AAATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAA
* *
345498 AGTTCATTTATAGTCACTCAAG-CTTTGAAAACCTTATTACTCGCTTTAAATGGTTTTATATTCT
129 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* *
345562 CATAATTGATTTTAAGTTGGGTTTTTTTTACATTTTTGGTTAAAATATGCTATAATAGAATGTCT
194 CATAATTGATTTTAAGTT-GGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCT
* * * * *
345627 GCCTGAGGAAACGTAAAGCAAAAGCCATCCACT-AGAGAGAAAAGTCCATTTATAGTCACTTAAG
258 GCCTTAGGAAACATGAAGCAAAAGCCATCCA-TGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
345691 CCTTTGAAAGCCTTATTACTC
322 CCTTTGAAAGCCTTATTACTC
* * * *
345712 ACTTTGAATGGTTTTATATCCTCATAATTGATTTTAAGTTAGA-TTTTTTACATTTTTGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * ** * * * * * *
345776 ATATGCTATTACTAAATGTCAACCTCAGGAAACGTGAAGCAAAAGTCATTCATTAGAAAGAAAAG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * *
345841 -CCTATTTATAGTCACTCAAGCCTTTGAAAGCTTTATTACTCGTTTTAAATGGTTATATATTCTC
131 TCC-ATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * * * *
345905 ATAACTAATTTTAAG-TGAGATTTTTTT-TATTTTTGG-TAAAATATTCTATTACTT-CATGTCT
195 ATAATTGATTTTAAGTTG-GATTTTTTTACATTTTTGGTTAAAATATGCTA-TAATTGAATGTCT
* * * * *
345966 GCCTT-GGAAAATATGAAGCAAAAGCCATCCATGGGTGAGAAAAGTCCATTTATAGTTATTTAAG
258 GCCTTAGG-AAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
* *
346030 CATTTAAAAGCCTTATTACTC
322 CCTTTGAAAGCCTTATTACTC
* * * * *
346051 ACTTTAAATGGTTTTATACTCTCATAATTGA--TTAAGTTGGATTTTTTTATATTTTTTGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * * *
346114 ATATGCTATAATTGAACGCCTGCCTCAAGAAACGTGAAGCAAAAGCCATCTATGGGATAGAAAAG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
346179 TCCATTTATTA-TCACTCAAGCTTTTGAAAGGCTTATTACTCGCTTTAAATGGTTTTATATTCTC
131 TCCATTTA-TAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* ** * * * * * * *
346243 ATAATTAATTTTAAGTTAAATTTTTTTATATTTATGGTTAAAATATTCTAGAA-TGAATATTTTC
195 ATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
* * ** **
346307 C-T-CGAAAAATGTGAAGCAAAAGCCATCTGTGGGAGAG-AAAGTCCATTTATAGTCACTCAAAT
260 CTTAGGAAACA--TGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
346369 CTTTGAAAAGCCTTATTACTC
323 CTTTG-AAAGCCTTATTACTC
* * * * * * * * *
346390 GCTCTAAAT-GATTTATATTCTCGTAATTGATGTTAAGTTCGATATTTTTACACTTTAGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * * ** * * *
346454 ATATTCTAGAATTTAATATTTTTCTCAAGAAATGTGAAGCAAAAGCCATCC-GTGGAAGAGAAAA
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGG-AGAGAAAA
* ******** * *
346518 GTTCATTTATAGTCACTCAA-CCNNNNNNNNNNCCTTATTACTCGCTTTAAATGGTTTTATAATG
130 GTCCATTTATAGTCACTCAAGCC--TTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * * * *
346582 TCATAATTGATTTTAAGTTGGACTTTTTCACATATTTGGTTAAAATATTCTAGAATTGAATGT-T
193 TCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCT
* * ** * * * * *
346646 ATCC-TCGAGAAATGTGAAGCAAAAACCAGCCATGGGAGGGAAAAGTCCATTTTTAATCACTCAA
258 -GCCTTAG-GAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAA
*
346710 GCCTTTGAAAAGCCTTATTACTT
321 GCCTTTG-AAAGCCTTATTACTC
** * *
346733 GCTTTAAATGGTTTTATATTCTCATAATTGAAGTTAAGCTGGATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
346798 ATATGCAATAATTTAATGTCTACCTCT-AGAAACATGAAGCAAAACCCATTCATTAGAGAGAAAA
66 ATATGCTATAATTGAATGTCTGCCT-TAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAA
*
346862 GTCCATTTATAGCCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * *
346927 ATAATTGATTTTAAGTTAGATATTTTTACATTTTTAGGTTAGAATATGCTATAATTGAATGTTTG
195 ATAATTGATTTTAAGTTGGATTTTTTTACATTTTT-GGTTAAAATATGCTATAATTGAATGTCTG
* ** * * *
346992 CCTT-GGTAAACGTCCAGTAAAAGCTATCCATCGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
259 CCTTAGG-AAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
*
347056 CTTTGGAAGCCTTATTACTC
323 CTTTGAAAGCCTTATTACTC
* * * **
347076 GCTTTAAATGGTTTTATATTATCATAATTGATTTTAAGTTGGATTTTTTTTCATTTTTTCTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * *
347141 ATATGCTATAATTGAACGTCTGACTCAAGAAACATGAAGCAAAAGCCATCCATT-GAGAGAAAAG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * *
347205 TCCATTTATTA-TCACTCAAGGCTTTGAAAGGCTTATTGCTCGCTATAAATGGTTTTATATTCTC
131 TCCATTTA-TAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * ** *
347269 ATAATTGATTTTAAGTTGGA-TTTTTTATATTTTTGGTTAAAATATTCTAGAATTGAACATTTGC
195 ATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
** * * *
347333 CTTCA-GAAATGTGAAGGAAAAGCCATCCATAGGAGAGAAAAGTCCATTTATAGTCACTCATGCC
260 CTT-AGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
** *
347397 TCTCAAAAGTCTTATTACTC
324 T-TTGAAAGCCTTATTACTC
* * * * *
347417 GCTTTAAATGGTTTTATATTCTCCTAA-TGAAATTTAAGTTGGATTTTTTT-TATTTTTGTTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTG-ATTTTAAGTTAGATTTTTTTACATTTTTGGTTAA
* * * * * *
347480 AATATGCAATAATTTAATGTCT-ACTTCTAGAAACATGAAGCAAAACCCATCCATTGGAGAGAAA
65 AATATGCTATAATTGAATGTCTGCCTT-AAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAA
* * *
347544 AGTCTATTTATAG-CTACTCAAGCCTTTAAAAGCCTTATTACTCGCTTTAAATTGTTTTATATTC
129 AGTCCATTTATAGTC-ACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * * * *
347608 TCATAATGGATTTTAAGTTGGATTTTTTTACATTTTTGATTAAAATATGTTATAATTGATTGTTT
193 TCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCT
** *
347673 GCCTTAACAAACATGAAGCAAAAGCCATCCATTGGCA-AG-AAAGTCCATTTATAGTCACTCAAG
258 GCCTTAGGAAACATGAAGCAAAAGCCATCCA-TGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
* *
347736 CCTTTGAAAGGCTTATTGCTC
322 CCTTTGAAAGCCTTATTACTC
* ** * * ***
347757 GCTTTAAATGATTTTATATTCTCATAATTGATTTTAAGCAAGTTTTTTTTTATATTTTTCACTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAG-ATTTTTTTACATTTTTGGTTAA
* * * * ** * * *
347822 AATATGCCATAATTGAACGTTTGCATCGAGAAACATGAAGTAAAAGCCATCCATGGGAGAGAAAA
65 AATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAA
* **
347887 GTCCATTTATAGTCACTTAAGCCTTCAAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
130 GTCCATTTATAGTCACTCAAGCCTT-TGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
** * * * *
347952 CATAATTGATTTTGCGTTGGA-TATTTTACATTTTTGGTTATAATATTCTAGAATTGAAAT-T-T
194 CATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTG-AATGTCT
* * *
348014 ACCTT-GATAAACATGAAGCAAAAGCCATCCATGGGAGA-AAAAGTCCATTTATAATCACTCAAG
258 GCCTTAG-GAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
348077 CCTTTGAAAAGTCC-TATTACTC
322 CCTTTG-AAAG-CCTTATTACTC
* * * * * *
348099 GCTTTAAATGGTTATATATTGTTATAATTGATTTTAAGTTGGAATTTTTTACATTTTAGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * * *
348164 ATATGCTATAATTGAATGTTTACCTTGAGAAACATGAAGCAGAAGCCATCCATTAGAGAGAAAAG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * * *
348229 TCGATTTATAGTCACTTAAGCCTTTGAAAGCCTTATTACTCGCTTTGAATGATTTTATATACTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * *
348294 TAATTGATTTTAAGTTGGATTTTTTTAGATTTTTGGTTAAAATATGCAATAATTGAATGTCTACC
196 TAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
* * * * *
348359 -TCGAGAAACATGAAGCACAAGGCA-CTCATTGGAGAAAAAAGTCCATTTATAGTCACTCAAGCC
261 TTAG-GAAACATGAAGCAAAAGCCATC-CATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
348422 TTTGAAAGCCTTATTACTC
324 TTTGAAAGCCTTATTACTC
* * * * *
348441 ACTTTAAATGATTTTATATTCTCATAATTGATTTTAAGTTTGATTTTTTTATATTTTTAGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
*** * * * * * ** * * *
348506 ATATGCTATTGCTGAATGTTTGCCTTATGGAACTTGAGGCAAATCCCAACTATTAGAGTA-AAAA
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAG-AGAAAA
* * * * * * *
348570 GTCCATTTATAGTCACTTAAGCATTTAAAAGCCTTATTACTCACTTTAAATGATTTTATATTTTT
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * ** * *
348635 ATAATTGATGTTAAGTTGGATATTTTTACAATTTTGGTTAAAATATATTATAATTGAATGTTTGT
195 ATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
* * * *
348700 CTCAAGAAACGTGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATGGTCACTCAAGCCT
260 CTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCT
* * *
348765 TTCAAAAACCTTACTACTC
325 TT-GAAAGCCTTATTACTC
* * ** * * **********
348784 GCTTTAAATGGTTATATAGTCTTGTAATTGATTTTAAGTTGGAATTTTTNNNNNNNNNNGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * * * * *
348849 ATATGCTATAATTGAATGTCTACCTCATGAAACATGAAGTAGAAGCCATCCATTAGAGAGAAGAG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * *
348914 TCGATTTATAGTCACTCAAGCCTTTGAAAGCCTAATTACTCGCTTTTAATGGTTTTATATACTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * * * *
348979 TAATTGATTTGAAGTTAGATTTGTTAAGATTTTTGGTTAAAATATGCTATAATTGAATGTCT-CN
196 TAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC-
***********************************************
349043 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
260 ------------------CTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCAT
************************************
349108 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
307 TTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
****************************************** * * **
349144 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTCATAATT-GATTTTAAGT
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATT-T--T-TTTACATTTTTGGT
* * * ** * * ** * *** * * **
349208 TAGATTTTTTTATATTTTTATTTAAAATATGTTATTACTCAATGTTTTCCTTGGGAAACGTGAAG
62 TAAAATATGCTATA-----A-TT--GA-ATG-TCTGCCTTAA-G--AAAC--GTGAAGC-AAAAG
* * * * * *
349273 CAAATGCCATCCATTTGAGTGAAAACTCCATTTATAGTCACTTAAGCATTTGAAAGCCTTATTAC
111 C-CAT-CC----ATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTAC
* * * * *
349338 TCGCTCTAATTGATTTTATATTCTCATAATTGATGTTAAGTTGGATATTTTTACATTTTTGGTTA
170 TCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTA
* ** ** * * ** * ** * * * *
349403 AAAAATTTTGGAGTTGAACT-TTTTTCTTAAGAAATGTGCAGCTAAAGCCATCCGTGGCAGAGAA
235 AAATATGCTATAATTGAA-TGTCTGCCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAA
*
349467 AAGTCCATTTATAGTCACTCAACCCTTTGAAAAGCCTTATTACTC
299 AAGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
* *
349512 GCTTTAAATGGTTTTATAGTT-TCATAATTGATTTTAAGTTAGATTTTTTGACATTTTTGGCTAA
1 GCTTTAAATGGTTTTATA-TTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAA
** * * * * * * * * *
349576 AATATTATAGAATTGAATGT-TATCCTCAAGAAACATGAAGTAAAAACCAGCCATGGGAGAAAAA
65 AATATGCTATAATTGAATGTCT-GCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAA
*
349640 AGTCCATTTATAGTCACTCAAGCCTTTGAAAAGCCTTATTACTTGCTTTAAATGGTTTTATATTC
129 AGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * * * ** * *
349705 TCATAATTGAATTTAAGCTGGATTGTTTTACATTTTTGGTTAAAATATGCAAGGATTTATTGTCT
193 TCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCT
* * * * ** *
349770 ACCTCT-GAAAACATGAAGTAAAACCCATCCATTAGAGAGAAAAGTCCATTTATAGCCACTCAAG
258 GCCT-TAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
*
349834 CCTTTGAAAGCCTTATTTCTC
322 CCTTTGAAAGCCTTATTACTC
* * *
349855 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAATTAGATATTTTTACATTTTAGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * ** * ** *
349920 ATATGCTATAGTTGAATGTTTACCTTGGGAAACATGAAGCAAAAGCCATCCATCAGAGAGAAATG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
349985 TCCATTTATAGTCACTCAAGCCTTTGGAAGCCTTATTGCTCGCTTTAAATGGTTTTATATTCTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * ** ** *
350050 TAATTGATTTTAAATTAGATTTTTTTTTATTTTTTCTTAAAATATGCTATAATTGAACGTCTGCC
196 TAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
* * * * * *
350115 TCAAGAAACGTGAAGCAAAAGCCATCCATGGGATATAAAAGTCCATTTATTA-TCACTCAAACCT
261 TTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTA-TAGTCACTCAAGCCT
* *
350179 TTGAAAGGCTTATTGCTC
325 TTGAAAGCCTTATTACTC
* ** * *
350197 G-TTATAAATTGTTTTATATTCTTGTAATTGATTTTAAGTTAGATTTTTTTATATTTTTAGTTAA
1 GCTT-TAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAA
* ** * * * * * *
350261 AATAT-CTAGAATTGAACCTTTGCCTTGAGAAATGTGAAGGAAAATCCATCCATGGGAGAGAAAA
65 AATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAA
* ** * * *
350325 GTCCATTTATAGTCACTTAAGCCTCTCAAAAGCCTTATTACTCACTTTAAATGATTTTATATTTT
130 GTCCATTTATAGTCACTCAAGCCT-TTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* * * *
350390 CATAATTGAATTTAAGTTAGATTTTTTTACATTTTTGTTTAAAATATG-TAATAATTTAATGTCT
194 CATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCT-ATAATTGAATGTCT
* * * * *
350454 ACCTCT-GGAAACATGAAGCAAAACCCATCCATTGGAGAGAAAAGTCCATTTATAGTTACCCAAG
258 GCCT-TAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAG
* ***
350518 CCTTTAAAATTTTTATTACTC
322 CCTTTGAAAGCCTTATTACTC
* *
350539 GCTTTAAATTGTTTTATATTCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * *
350604 ATATGTTATAATTGATTGTTTGCCTTAAGAAACATGAAGCAAAAGCCATCCATTGGTA-AG-AAA
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGG-AGAGAAAA
* * *
350667 GTTCATTTATAGTCACTCAAGCCTTTGAAAGGCTTATTACTCGCTTTAAGTGGTTTTATATTCTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* ** ** ** * * *
350732 ATAATTAATTTTAAGTAAG-TTTTTTTATTTTTTTTATTAAAATATG-TCATAATTGAAGGTTTT
195 ATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCT-ATAATTGAATGTCTG
* *
350795 CC-TCGAGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTTAAGC
259 CCTTAG-GAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
** *
350859 CTTCCAAAAGCCTTA-TACTT
323 CTT-TGAAAGCCTTATTACTC
** * * * **
350879 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTGCGTTGGA-TATTTTGCATTTTTCATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * * * **
350943 ATATTCTAGAATTAAAAT-T-TACCTTGAGAAACTTGAAGCAAAAGCCATCCATAAGAGAGAAAA
66 ATATGCTATAATT-GAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAA
* *
351006 GTCCATTTATAGTCACTCAAGCCTTTGAAAAGCCTTATTACTTGCTTTAAATGGTTATATATTCT
130 GTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
** * * * * *
351071 TGTAATTGATTTTAAGTTAGAATTTTTTACATTTTAGATTAAAATATGCTATAATTGAATGTCTA
194 CATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTG
* * * * * * *
351136 CATCAAGAAACATGAAGCAGAAGCCATCCATTGTAGAGAAAAGTCAATTTATAGTCACTCAAGCC
259 CCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
*
351201 TTTGAAAGTCTTATTACTC
324 TTTGAAAGCCTTATTACTC
* * * * * *
351220 TCTTTAAATGGTTTTATATACTCATAATTGATTTTTAGTTAGATTTTTTTAGATTTTTGATCAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * * * *
351285 ATGTGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCACAAGGCATTCATCGGAGAGAAAAG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
351350 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * * ** * * *
351415 TAATTGATTTTAATTTGGATTTGTTTATATTTTTAATTAAAATATGCTATTACTGAATGTTTGCC
196 TAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
* * * * ** ** * * *
351480 TTATGG-AACCTAAAGCAAATGCCATCTATTAGAGTCAAAAGTCCATTTATAGTAACTTAAGCAT
261 TTA-GGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCT
* *
351544 TTAAAAGCCTTATTATTC
325 TTGAAAGCCTTATTACTC
* * * * * *
351562 GCTCTAAATGATTTTATATTCTCATAATTGATGTTAAGTTGGATATTTTTACACTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
** * * * * ** *
351627 ATATATTATAATTGAATGTTTACCTCAGGAAACGTGAAGCAAAAATCATCCAATGGAGAGAAAAG
66 ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
** * *
351692 TATATTTATAGTCACTCAAGCCCTAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * * *
351757 TAATTGATGTTAAGTTGGATTTTTTTACATTTTGGGTTAAAATATGTTATAATTGAATGTTTGCC
196 TAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
* * * *
351822 TT-GAGAAACATGAAGCAAAAGTCATCCATGGAAGA-AAAAGGTGCATTTATAGTCACTCAATCC
261 TTAG-GAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAA-GTCCATTTATAGTCACTCAAGCC
* *
351885 TTTGAAAGACTTATTAGTC
324 TTTGAAAGCCTTATTACTC
*
351904 GCTTTAAATGGTTTTATTTATT-T-ATAATTGATTTTAAGTTAGATTTTTTTATATTTTTGGTTA
1 GCTTTAAATGGTTTTA--TATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTA
* * * * * *
351967 GAATATGCTATACTTGAATGTCTGCCTCAGGAAACGTGAAGCAAAAGCCATCCAATGAAGAGAAA
64 AAATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAA
** * * * * *
352032 AGAACATTTATAGTCACTCAAGCATTTGGAAGCCTTATTACTCACTTTAAAAGGTTTTATATTTT
129 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* * * * * *
352097 CATAATTGATTTTAACTTAGATTTTTTTACATTTTTGGTTAAAATATTCTATAGTT-AA-ATAT-
194 CATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTG
* * * ** * * * *
352159 -C-T-----ACCT----CAAAAGTCATTCATTAGAGAGAAAAGTCCATTTACAATCCCTAAAGCC
259 CCTTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
* *
352213 TTTGAAAACCTTATTACTT
324 TTTGAAAGCCTTATTACTC
* *
352232 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTTGATTTTTTTACATTTTTAGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
* * *
352297 ATATGCTATTAATT-CATGTTTG-CTTAAGGAAATGTGAAGCAAAAGCCATCCATTGGCA-AGAA
66 ATATGCTA-TAATTGAATGTCTGCCTTAA-GAAACGTGAAGCAAAAGCCATCCATTGG-AGAGAA
* *
352359 AAG-CCATATATAGTCACTCCAGCCTTTGAAAGCCTTATTAC
128 AAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTAC
352400 ACATTGGATG
Statistics
Matches: 9832, Mismatches: 2366, Indels: 732
0.76 0.18 0.06
Matches are distributed among these distances:
326 4 0.00
327 37 0.00
328 148 0.02
329 9 0.00
332 3 0.00
337 15 0.00
338 369 0.04
339 1059 0.11
340 1164 0.12
341 1986 0.20
342 2560 0.26
343 1452 0.15
344 575 0.06
345 13 0.00
346 1 0.00
347 2 0.00
348 1 0.00
349 8 0.00
350 5 0.00
352 1 0.00
353 3 0.00
354 2 0.00
355 7 0.00
356 3 0.00
357 3 0.00
359 5 0.00
360 3 0.00
361 4 0.00
362 7 0.00
363 17 0.00
364 4 0.00
365 22 0.00
366 1 0.00
367 4 0.00
368 4 0.00
369 2 0.00
370 6 0.00
371 14 0.00
372 6 0.00
373 9 0.00
374 2 0.00
375 5 0.00
376 2 0.00
377 13 0.00
378 5 0.00
379 5 0.00
380 4 0.00
381 18 0.00
382 9 0.00
383 2 0.00
385 113 0.01
386 2 0.00
387 3 0.00
389 6 0.00
390 9 0.00
391 5 0.00
392 1 0.00
393 7 0.00
395 2 0.00
399 2 0.00
402 2 0.00
403 5 0.00
409 70 0.01
410 2 0.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.38
Consensus pattern (342 bp):
GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAA
ATATGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAG
TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
TAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
TTAGGAAACATGAAGCAAAAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTT
TGAAAGCCTTATTACTC
Found at i:348610 original size:513 final size:513
Alignment explanation
Indices: 339503--352399 Score: 10178
Period size: 512 Copynumber: 25.0 Consensus size: 513
339493 AGTCACCCAA
* *
339503 GCTTTAAATGATTTTATATTCTCATAACTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * * *
339568 ATATGCTATAATAGAGTGTCTGCCT-TAGGAAACGTAAAGCAAAAGCCATCCACTAGAGAGAAAA
66 ATATGCTATAATTGAATGTCTACCTCGA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * *
339632 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCTCTCTAAATTGTTTTATATTCTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * * * * * *
339697 ATAATTAATTTTAAGTTGGA-TTTTTTATATTTTTGGTTAAAATATGCTATTACTAAACGTCAGC
195 ATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
* * * *
339761 C-CTAGGAA-ATGTAAAGCAAAAGCCATTCATT--AGAGAAAAGTCGATTTATAGTCACTCAAGC
260 CTCAAGAAACATG--AAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
** * * *
339822 CTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCCCATAACTGATTTTAAGTGGGATT
323 CTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATT
* * * * * * * * * *
339887 GTTTTT-CATTTTTGGTTAAAATATTCTTTTACTT-CATGTCTACCTT-AGGAGATGTAAAGAAA
388 -TTTTTACATTTTTGGTTAAAATATGC-TATAATTGAATGTTTGCCTTGA-GAAACGTGAAGCAA
*
339949 AAGCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAAGCCTTATTACTC
450 AAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
* * * * *
340014 GCTTTAAATGGTTTTATATTCTGATAATTCAATTTAAGTTAGATTTTTTTACATTTTTGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * *
340079 ATATG-TAATAATTTAATGTTTACCTCTAGAAACATGAAGCGAAACCCATCCATTGGAAAGAAAA
66 ATATGCT-ATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
** * * * * * * * *
340143 GTTTATTTATAGCCACTCAAGCCATTGAGAGCCCTATTATTCGCTTTACACGGTTTTATATTTTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * *
340208 ATAATTGATTTTAAGTTAGATTTTTTTATATTTTTGGTTAAAATAT-ATCATAATTGAACGTCTA
195 ATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCT-ATAATTGAATGTCTG
* * * * * * *
340272 TCT-AGGGAA-ATGTAAAGAAAAAGCCA-CC-TATGGTAGAGAAATGTCTATTTATAGTTACTCA
259 CCTCAAGAAACATG--AAGCAAAAGCCATCCAT-TGG-AGAGAAAAGTCCATTTATAGTCACTCA
* * *
340333 AGCCATTAAAAGCCTTATTATTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGCTGG
320 AGCCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAG-TTG
* * * * *
340398 GTTTTTTTTACATTTTTTGGTTAAAATATGCTATAATTGAATGTTTGCC-TCAAAAACCTGAAGT
384 GATTTTTTTACA-TTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGC
* ** * * * *
340462 AAAAGCCATCCATTAGAGAGAAAAGTGAATTTATAATCACTCAAGCCATTGAAAGCCCTATTACC
448 AAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACT
340527 C
513 C
* * * **
340528 GCTTTAAATAGTTTTATATTCTCATAATTGATTTTAAATTAGATTTTTTTTACATTTTTAATTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGA-TTTTTTTACATTTTTGGTTAA
* * * * ** * * **
340593 AATATGCTATAATTGATTGTCTATCTTGGGAAATGTGAAGTAAAAACCATCCATTATAGAGAAAA
65 AATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * * * *
340658 GTCCATTTATAGTGACTCAAGCCTTTGGAAGCCTTATTACACGCTTTAAATTGTTTTGTATTCTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * *
340723 ATAATTGATTTTTAGTTAGATTTTTTTACATTTTTGGTTAAAATATGTTGTAATTGAATGTTTG-
195 ATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
* * * ** *
340787 -TCATGGGAAACGTGAAGCAAAAGCCATCCACTACAGAGAAAAGTACATTTATAGTCACTCAAGC
260 CTCA--AGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
** * *
340851 CTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTCGATT
323 CTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATT
* * * * * * *
340916 TTTTT-CATTTTTGGTTAAAATATGCTATTACTGAATGTTTACCTCGAGAAACATGAAGAAAAAT
388 TTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAG
* * * * * * * * *
340980 CTATCCATCTAG-GATAAAAGTCTATTTATAGTCACTCGAGCATTTAAAAGCCTTATTCCAC
453 CCATCCAT-TGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
341041 GCTTTAAATAGTTTCATATTCTTATAATTGATTTTAAGTTGGAATTTTTTAAATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * ** * * *
341106 A-ATTGCTAGT-ACTGAGTGTCTA-CTTTAGGAAACATAAAGCAAAAGCCGTCCATTAGAGAGAA
66 ATA-TGCTA-TAATTGAATGTCTACCTCGA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAA
* * *
341168 AAGTCCATTTATAGTCACTCAAGCCTTTAAAAGCCTTATTACACTCTTTAAATGGTTTTATATTC
128 AAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * *
341233 TCATAATTGATTTTAAGTTGGATTTTTTT-CTATTTTTTGTTAAAATATACTATAATTG-ATCGT
193 TCATAATTGATTTTAAGTTAGATTTTTTTAC-ATTTTTGGTTAAAATATGCTATAATTGAAT-GT
* * ** * *
341296 CT-ACTC-CGAAATGTGAAGCAAAAGCCATCCATTGTAGAGAAAAGTCCATTTATAATCACTCAA
256 CTGCCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAA
** * * * * **
341359 ATCTTTGAAAGCTTTATTA-TACGCTTTAAATTG-TTTATATTCTCATAATTGATTTTAGGTTAA
321 GCCTTTAAAAGCCTTATTACT-CGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGG
* ** * * * * *
341422 ATTTTTTAACATTTTTGGTTAAAATATATTGTAATTAAATGTCTGCCTTGGGAAACATGAAGCAA
385 ATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAA
* *
341487 AAGCCATCCATTGGAGAAAAAAGTACATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
450 AAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
*
341551 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAATTTTTTACA-TTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
341615 ATATGCTATTACTAAATGTCTGCCTCTG-GAAACGTGAAG-AAAAGCCATCCATTAGG-GAGAAA
66 ATATGCTATAATTGAATGTCTACCTC-GAGAAACATGAAGCAAAAGCCATCCATT-GGAGAGAAA
** * * * * * * *
341677 AGTATATTTATAGTCACTCGAA-CTTTTGAAAGCCTTATTCCACTCTTGAAATAGCTTTATATTC
129 AGTCCATTTATAGTCACTC-AAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * * * * ** *
341741 TCATAATTGATTTTAATTTAGAATTTTTAAAATTTTTGATTAAAATATTTTATAATCGAATG-CT
193 TCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTC-
* * * *
341805 TGCCTTAGGAAACATGAAGCAAAAGCCATCTATTGGCGAGAAAAG-CCATTTATAGTCACTCAAG
257 TGCCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAG
* * * * * * * * *
341869 CCTTTGAAAGCATGATTAATCTCTTTAAATGGTTTTATATTCCCATAATAGATTTTAAGTTGAAA
322 CCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAT
** ** * * ** * *
341934 TTTTTTACATTTTTCATTAAAATATATTATAATTGAAAGTCTATCTCTGA-AAACCTGAAGTAAA
387 TTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCT-TGAGAAACGTGAAGCAAA
** * * *
341998 AGCCATCCATTGGAGAGAAAAGTGAATTTATAGTCACTCAAGCCATTAAAAGCCCTATTACTC
451 AGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
342061 GTTTTAAATGATTTTATATTCTCATAATTCATTTTAAGTTGGATTTTTTTATATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * ** **
342126 ATATGCTATAATTGATTGTCCACCTTGAGAAATGTGAAGCAAAAGCCATCCATTATAGAGAAAAG
66 ATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * ** * *
342191 TCTATTTATAGTCACTCAAGCCTTTAAAAGTGTTATTACACGCTTTAAATTGTTTTATATTCTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * * * * * *
342256 TAATTGATTTTCAGTTAGATTTTTTTACATTTTTTGTGAAAATATGTTGTAATTGAATCTTTGCC
196 TAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
* * * * * * * *
342321 TTAGGAAACGTGAAGAAAAAGCCATCCATTAGAGAG-AAAGTACATTTATAGTCGCCCAAGCCTT
261 TCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTT
* * * * * *
342385 TGAAAGCCTTATTACTTGCTTTAAATGATTTTATATTCTCATAATTGATTTTAAATTGAAATTTT
326 TAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTT
* * * * * ** * * *
342450 TTACA-TTTTGGTTAAAATATGCTATTACTAAATGTCTGCATCAAGAAACATGAAGAAAAAGTCA
391 TTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAGCCA
* * * * * *
342514 TCCATTAGG-GAAAAAAGTCTATTTATATTAACTCAAGCATTTGAAAGCCTTA-TCCAT-
456 TCCATT-GGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTAC-TC
* * * **
342571 ACTTTAAATGGTTTTATATTCTCATAATTCATTTTAAGTTGAAAATTTTTA-ATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
342635 ATATGCTATTACTGAATGTCTGCCATTG-GAAACGTGAAGCAAAAGCCATCCGTTAGAGAGAAAA
66 ATATGCTATAATTGAATGTCTACC-TCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * *
342699 GTCCATTTATGGTCACTCAAGCCTTTAAAAGCCTTATTACTCGCTTTAAATAGTTTTATATTCTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * * * * * *
342764 ATAATTGATTTTAAGTTGGATTTTTTAAAATTTTTTGTTCAAATAAGTTGTAATTGAATG-CTTG
195 ATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTC-TG
*** * * * *
342828 CCTTGGGAAACATGAAGCAAAAGTCATCCATTGGTA-TGAAAAG-CCATTTATAGTGACTTAAGC
259 CCTCAAGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAAAGTCCATTTATAGTCACTCAAGC
** * * * * * *
342891 CTTCGAAAGCTTTATTACTCACTCTAAATGGTTTTATATTCTCATAATAGATTTTAAATTGAAAT
323 CTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTG-GAT
* * * *
342956 TTTTTGTATA-TTTT-GTTAAAATATGCTATAATTGAATG-TCGTCCTT-AGGAAACATGAAGTA
387 TTTTT-TACATTTTTGGTTAAAATATGCTATAATTGAATGTTTG-CCTTGA-GAAACGTGAAGCA
* ** * * *
343017 AAAGCCATCCATTGGAGAAAAAAGTTAATTTATAGTCACTCAAGCCATTGAAAGCCCTATTAGTC
449 AAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
** * * * * *
343082 GCTTTAAACAGATTTATATTCTCAAAATTGATTTTAAGTTGGATTTTTTTATATTTTTGCTTTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * *
343147 ATATACTATAATTGAACGTCTACCT-TAGGAAACATGAAGCAAAAGCCATCCATGGGAGACAAAA
66 ATATGCTATAATTGAATGTCTACCTCGA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * * * *
343211 GTCTATTTATAGTCACTCAAGCCATTGAAAGCCTTATTATTTGCTTTAACTGGTTTTATATTCTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * *
343276 ATAATTGATTTTAAGCTAGATTTTTTTATATTTTTAGTTAAAATTTG-TGATAATTGAATGTCTG
195 ATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCT-ATAATTGAATGTCTG
* * ** * *
343340 CCTCAAGAAATATGAAGCAAAAGCCATCTAACGGAGTGAAAAG-CATATTTATAGTCACTCAAGC
259 CCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTC-CATTTATAGTCACTCAAGC
* * ** *
343404 CTTTGAAAGCCTTAGTACTCATTTTAAATGGTTTTATATTCTCATAATTGATTTTATGTTGGA-T
323 CTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATT
* * * * * * * *
343468 TTTTTGCATGTTGGGTTAAAATATGCTATAATTCAATATCTACCTTGTGAAACGTGAAGCAAAAG
388 TTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAG
* * * *
343533 CCATCCATTAGAGAGAAAAGTCCATTTATAATCACTCAAGCCTTTGAAAGCTTTATTGCTC
453 CCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* ** * * * * *
343594 GTTTTAAATAATTTTATATTCTGATAATTAACTTTAAGTAGGATTTTTTTACATTTTTAG-TAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * *
343658 TATATGCTATAATTGAACGTTTGCCTTGGGAAACATGAAGCAAAAGCTATTCA-TGGAAGAGAAA
66 -ATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAA
* *
343722 AGTCCATTTATAATCACTTAAGCCTTTGAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
129 AGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * ** * * ** *
343787 TTATAATTGATTTTAAGTTGGA-TTTTTTACATTTTTGACTAAAATATTCTAGAATTGAACATTT
193 TCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCT
* * * * * *
343851 ACCTCAAGAAACGTGAAG-TAAAGCTATCCA-TGGCAGAGAAAAGTCTATTTATAGTTACTCAAG
258 GCCTCAAGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAAAGTCCATTTATAGTCACTCAAG
* * * *
343914 CCTTT-GAAGACCTTATTACTCGCTTTAAATGGTTTTATACTCTTATAATTGATTTTAAGTTAGA
322 CCTTTAAAAG-CCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGA
* * * * * *
343978 TTTTTTTACACTTTTGGTCAAAATATGTTATAATTGAATGCTTGCCTTG-GTAAGCATGAAGC-A
386 TTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAG-AAACGTGAAGCAA
* * * *
344041 AAGCCATCCTTTAGTA-AGAAAAG-CCATTTATAGTCACTCAAGCTTTTGAAAACCTTATTACTC
450 AAGCCATCCATT-GGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
344104 ACTTTAAATGGTTTTATATTCTCATAATAGATTTTAAGTTCG-TATTTTTTACATTTTTGATTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAT-TTTTTTACATTTTTGGTTAA
* * * **************** *
344168 AATATACTATAATTGAATGTTTA-CT-GTAGGAAACGTNNNNNNNNNNNNNNNNATGGGAGA-AA
65 AATATGCTATAATTGAATGTCTACCTCG-A-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAA
* * * * *
344230 AAGTCTATTTAAAGTCACTCAA-CACCTTGAAAGACTTATTACTCGCTTTAAATGGTTTTATATA
128 AAGTCCATTTATAGTCACTCAAGC-CTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATT
* * * * *
344294 CTCATAATTGATTTTAATTTGGATTTTTTAAAATTTTTGGTTAAAATATGTTATAATTGAATG-C
192 CTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTC
* *** ** *
344358 TTGGCTTGGGAAACATGAAGCAAAAGCCATCCATTTTCA-AGAAAAGT-TATTTATAGTCACTCA
257 -TGCCTCAAGAAACATGAAGCAAAAGCCATCCA-TTGGAGAGAAAAGTCCATTTATAGTCACTCA
* * * * *
344421 ATCCTTTGAAAGCCTTATTACTCGCTTTCAATAGTTTTATATTCTCATAATTGATTTTAAGTTAG
320 AGCCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGG
* * * * * * *
344486 ATTTTTTTTTACATTTTTGGTTAAAGTATGCTATTATTGAATGTCTGTCTTAAGAAATGTGAAAC
385 A--TTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGC
* * * * **
344551 AAAAGCCATCAATTAGAGAGAAAAGTCCATTTATAGTGACTCAAGTCTTTGAAAGTATTATTACT
448 AAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACT
344616 C
513 C
* ****
344617 GCTTTAAATGGTTTTATATTCTCATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 GCTTTAAATGGTTTTATATTCTCATAATTGAT-----------------------------TTTA
*****************************************************************
344682 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
37 AGTTGGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTACCTCGAGAAACATG
********************************************************** **** *
344747 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAAA
102 AAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTAT
* * ** *** ** * ** *
344812 AAGTCTATTTAAAGTCACTCAACACCTTGAAAGACTTATTACTCACTTTAAATAGTTTTATAGTC
167 TACTCGCTTTAAA-TGGTTTTATA--TTCT----C--A-TA---A--TT---GA-TTTTA-AG--
* * * * ** *
344877 TCATAACTGATTTTAAGTTGGATTTATTTACATTTTAGTTAAACTATATTATAATTGAACGTCTG
210 T--T-A--GA--TT---TT---TTTA--CA-TTTTTGGTTAAAATATGCTATAATTGAATGTCTG
* * * * * *
344942 CCTCAAGAAACATGAAGCAAAAGTCATCCATTGGAGAGAAAAGTCAATTTATAGTCGCTTAAACT
259 CCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
* * * *
345007 TTTGAAAGCCTTATTACTCACTTTAAATAGTTTTATATGCTCATAATTGAATTTTAAGTTGGATT
324 TTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTG-ATTTTAAGTTGGATT
* * *
345072 TTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTACCTTGAGAAACGTAAAGCAAAAG
388 TTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAG
* * ** * * * *
345137 CCATCCATAGGAGAGAAAGGTCCATTTATAGTTTCTCAAGCTTTTGAAAGTCTTATCATTC
453 CCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
345198 GCTTTAAATGGTTTTATATACTCATAATTGATTTTAACTTAGATTTTTTTACATTTCTAGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
** * * ** * * *
345263 ATATGCCCTACTTAAATGTCTGTCTTGAGAAACGTGAAGCAAAAGCCATCCATGGGAGA-AAAAG
66 ATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* * * * * *
345327 TCCATTTATAGTCACTCAAGCCTTTGGAAGCCTAATTATTTGCTTAAAATGGTTTTATACTCTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * *
345392 TAATTGATTTTAAGTTGGATTTATTTTTACATTTTTGGCTAAAATATGCTATAATTGAATGTCTA
196 TAATTGATTTTAAGTTAGA-TT-TTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTG
* * * * * * *
345457 CCTTAAGAAACATCAGGAAAAAGCCACCCATGGGAGAGAAAAGTTCATTTATAGTCACTCAAG-C
259 CCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
*
345521 TTTGAAAA-CCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGGTT
324 TTT-AAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTT-GGAT
* * *
345585 TTTTTTACATTTTTGGTTAAAATATGCTATAATAGAATGTCTGCC-TGAGGAAACGTAAAGCAAA
387 TTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGA-GAAACGTGAAGCAAA
* * *
345649 AGCCATCCACTAGAGAGAAAAGTCCATTTATAGTCACTTAAGCCTTTGAAAGCCTTATTACTC
451 AGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
345712 ACTTTGAATGGTTTTATATCCTCATAATTGATTTTAAGTTAGA-TTTTTTACATTTTTGATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * * * *
345776 ATATGCTATTACTAAATGTCAACCTC-AGGAAACGTGAAGCAAAAGTCATTCATTAGAAAGAAAA
66 ATATGCTATAATTGAATGTCTACCTCGA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * *
345840 G-CCTATTTATAGTCACTCAAGCCTTTGAAAGCTTTATTACTCGTTTTAAATGGTTATATATTCT
130 GTCC-ATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* * * * * * *
345904 CATAACTAATTTTAAGTGAGATTTTTTT-TATTTTTGG-TAAAATATTCTATTACTT-CATGTCT
194 CATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTA-TAATTGAATGTCT
** * * * * * *
345966 GCCT-TGGAAAATATGAAGCAAAAGCCATCCATGGGTGAGAAAAGTCCATTTATAGTTATTTAAG
258 GCCTCAAG-AAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAG
* * *
346030 CATTTAAAAGCCTTATTACTCACTTTAAATGGTTTTATACTCTCATAATTGA--TTAAGTTGGAT
322 CCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAT
* * * ** **
346093 TTTTTTATATTTTTTGTTAAAATATGCTATAATTGAACGCCTGCCTCAAGAAACGTGAAGCAAAA
387 TTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAA
* * * * *
346158 GCCATCTATGGGATAGAAAAGTCCATTTATTA-TCACTCAAGCTTTTGAAAGGCTTATTACTC
452 GCCATCCATTGGAGAGAAAAGTCCATTTA-TAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* ** * *
346220 GCTTTAAATGGTTTTATATTCTCATAATTAATTTTAAGTTAAATTTTTTTATATTTATGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * ** ** *
346285 ATATTCTAGAA-TGAATATTTTCCTCGAAAAATGTGAAGCAAAAGCCATCTGTGGGAGAG-AAAG
66 ATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
** * *
346348 TCCATTTATAGTCACTCAAATCTTTGAAAAGCCTTATTACTCGCTCTAAAT-GATTTATATTCTC
131 TCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * * * * * * * * * * **
346412 GTAATTGATGTTAAGTTCGATATTTTTACACTTTAGATTAAAATATTCTAGAATTTAATATTTTT
195 ATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
** * *
346477 CTCAAGAAATGTGAAGCAAAAGCCATCC-GTGGAAGAGAAAAGTTCATTTATAGTCACTCAA-CC
260 CTCAAGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAAAGTCCATTTATAGTCACTCAAGCC
******** * * *
346540 NNNNNNNNNNCCTTATTACTCGCTTTAAATGGTTTTATAATGTCATAATTGATTTTAAGTTGGAC
324 --TTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAT
* * * * * *
346605 TTTTTCACATATTTGGTTAAAATATTCTAGAATTGAATGTTAT-CCTCGAGAAATGTGAAGCAAA
387 TTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTT-TGCCTTGAGAAACGTGAAGCAAA
* * * * * * *
346669 AACCAGCCATGGGAGGGAAAAGTCCATTTTTAATCACTCAAGCCTTTGAAAAGCCTTATTACTT
451 AGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTC
** *
346733 GCTTTAAATGGTTTTATATTCTCATAATTGAAGTTAAGCTGGATTTTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * *
346798 ATATGCAATAATTTAATGTCTACCTCTAGAAACATGAAGCAAAACCCATTCATTAGAGAGAAAAG
66 ATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
*
346863 TCCATTTATAGCCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* * *
346928 TAATTGATTTTAAGTTAGATATTTTTACATTTTTAGGTTAGAATATGCTATAATTGAATGTTTGC
196 TAATTGATTTTAAGTTAGATTTTTTTACATTTTT-GGTTAAAATATGCTATAATTGAATGTCTGC
** * ** * * *
346993 CT-TGGTAAACGTCCAGTAAAAGCTATCCATCGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
260 CTCAAG-AAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
** *
347057 TTTGGAAGCCTTATTACTCGCTTTAAATGGTTTTATATTATCATAATTGATTTTAAGTTGGATTT
324 TTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTT
* ** * * * ** *
347122 TTTTTCATTTTTTCTTAAAATATGCTATAATTGAACGTCTGACTCAAGAAACATGAAGCAAAAGC
389 TTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAGC
* * *
347187 CATCCATT-GAGAGAAAAGTCCATTTATTA-TCACTCAAGGCTTTGAAAGGCTTATTGCTC
454 CATCCATTGGAGAGAAAAGTCCATTTA-TAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* *
347246 GCTATAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGA-TTTTTTATATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * ** * * ** * *
347310 ATATTCTAGAATTGAACATTTGCCTTC-AGAAATGTGAAGGAAAAGCCATCCATAGGAGAGAAAA
66 ATATGCTATAATTGAATGTCTACC-TCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* ** *
347374 GTCCATTTATAGTCACTCATGCCTCTCAAAAGTCTTATTACTCGCTTTAAATGGTTTTATATTCT
130 GTCCATTTATAGTCACTCAAGCCT-TTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* * * * * * *
347439 CCTAA-TGAAATTTAAGTTGGATTTTTTT-TATTTTTGTTTAAAATATGCAATAATTTAATGTCT
194 CATAATTG-ATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCT
* * * * *
347502 ACTTCTAGAAACATGAAGCAAAACCCATCCATTGGAGAGAAAAGTCTATTTATAG-CTACTCAAG
258 GCCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTC-ACTCAAG
* *
347566 CCTTTAAAAGCCTTATTACTCGCTTTAAATTGTTTTATATTCTCATAATGGATTTTAAGTTGGAT
322 CCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAT
* * * * * *
347631 TTTTTTACATTTTTGATTAAAATATGTTATAATTGATTGTTTGCCTTAACAAACATGAAGCAAAA
387 TTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAA
* *
347696 GCCATCCATTGGCA-AG-AAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGGCTTATTGCTC
452 GCCATCCATTGG-AGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* ** ** * ***
347757 GCTTTAAATGATTTTATATTCTCATAATTGATTTTAAGCAAGTTTTTTTTTATATTTTTCACTAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAG-TTGGATTTTTTTACATTTTTGGTTAA
* * * * * * *
347822 AATATGCCATAATTGAACGTTTGCATCGAGAAACATGAAGTAAAAGCCATCCATGGGAGAGAAAA
65 AATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* **
347887 GTCCATTTATAGTCACTTAAGCCTTCAAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
130 GTCCATTTATAGTCACTCAAGCCTT-TGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
** * * * * *
347952 CATAATTGATTTTGCGTTGGA-TATTTTACATTTTTGGTTATAATATTCTAGAATTGAAAT-T-T
194 CATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTG-AATGTCT
* ** * * *
348014 ACCTTGATAAACATGAAGCAAAAGCCATCCATGGGAGA-AAAAGTCCATTTATAATCACTCAAGC
258 GCCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
* * *
348078 CTTTGAAAAGTCC-TATTACTCGCTTTAAATGGTTATATATTGTTATAATTGATTTTAAGTTGGA
323 CTTT-AAAAG-CCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGA
* * * * *
348142 ATTTTTTACATTTTAGGTTAAAATATGCTATAATTGAATGTTTACCTTGAGAAACATGAAGCAGA
386 TTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAA
* * *
348207 AGCCATCCATTAGAGAGAAAAGTCGATTTATAGTCACTTAAGCCTTTGAAAGCCTTATTACTC
451 AGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
348270 GCTTTGAATGATTTTATATACTCATAATTGATTTTAAGTTGGATTTTTTTAGATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * *
348335 ATATGCAATAATTGAATGTCTACCTCGAGAAACATGAAGCACAAGGCA-CTCATTGGAGAAAAAA
66 ATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATC-CATTGGAGAGAAAA
* *
348399 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCACTTTAAATGATTTTATATTCTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * *** *
348464 ATAATTGATTTTAAGTTTGATTTTTTTATATTTTTAGTTAAAATATGCTATTGCTGAATGTTTGC
195 ATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
* * * * * ** * * * * *
348529 CTTATGGAACTTGAGGCAAATCCCAACTATTAGAGTA-AAAAGTCCATTTATAGTCACTTAAGCA
260 CTCAAGAAACATGAAGCAAAAGCCATCCATTGGAG-AGAAAAGTCCATTTATAGTCACTCAAGCC
* * * * * *
348593 TTTAAAAGCCTTATTACTCACTTTAAATGATTTTATATTTTTATAATTGATGTTAAGTTGGATAT
324 TTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTT
* ** * **
348658 TTTTACAATTTTGGTTAAAATATATTATAATTGAATGTTTGTCTCAAGAAACGTGAAGCAAAAGC
389 TTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAGC
* * * * *
348723 CATCCATGGGAGAGAAAAGTCCATTTATGGTCACTCAAGCCTTTCAAAAACCTTACTACTC
454 CATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTT-GAAAGCCTTATTACTC
* * ** * **********
348784 GCTTTAAATGGTTATATAGTCTTGTAATTGATTTTAAGTTGGAATTTTTNNNNNNNNNNGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * *
348849 ATATGCTATAATTGAATGTCTACCTC-ATGAAACATGAAGTAGAAGCCATCCATTAGAGAGAAGA
66 ATATGCTATAATTGAATGTCTACCTCGA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * * *
348913 GTCGATTTATAGTCACTCAAGCCTTTGAAAGCCTAATTACTCGCTTTTAATGGTTTTATATACTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * *
348978 ATAATTGATTTGAAGTTAGATTTGTTAAGATTTTTGGTTAAAATATGCTATAATTGAATGTCT-C
195 ATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
**********************************
349042 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
260 -------------------------------CTCAAGAAACATGAAGCAAAAGCCATCCATTGGA
*****************************************************************
349107 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
294 GAGAAAAGTCCATTTATAGTCACTCAAGCCTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTA
************** * * * **
349172 NNNNNNNNNNNNNNATTCTCATAATT-GATTTTAAGTTAGATTTTTTTATATTTTTATTTAAAAT
359 TATTCTCATAATTGATT-TTA-AGTTGGA-TT-----------TTTTTACATTTTTGGTTAAAAT
* * * * * * * * * *
349236 ATGTTATTACTCAATGTTTTCCTTGGGAAACGTGAAGCAAATGCCATCCATTTGAGTGAAAACTC
410 ATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAGCCATCCATTGGAGAGAAAAGTC
* *
349301 CATTTATAGTCACTTAAGCATTTGAAAGCCTTATTACTC
475 CATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * * *
349340 GCTCTAATTGATTTTATATTCTCATAATTGATGTTAAGTTGGATATTTTTACATTTTTGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* ** ** * * ** ** ** * * *
349405 AAATTTTGGAGTTGAACT-TTTTTCTTAAGAAATGTGCAGCTAAAGCCATCC-GTGGCAGAGAAA
66 ATATGCTATAATTGAA-TGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAA
*
349468 AGTCCATTTATAGTCACTCAACCCTTTGAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAGTT
129 AGTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTCGCTTTAAATGGTTTTATA-TT
* * ** *
349533 -TCATAATTGATTTTAAGTTAGATTTTTTGACATTTTTGGCTAAAATATTATAGAATTGAATGT-
192 CTCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTC
* * * * * *
349596 TATCCTCAAGAAACATGAAGTAAAAACCAGCCATGGGAGAAAAAAGTCCATTTATAGTCACTCAA
257 T-GCCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAA
* * *
349661 GCCTTTGAAAAGCCTTATTACTTGCTTTAAATGGTTTTATATTCTCATAATTGAATTTAAGCTGG
321 GCCTTT-AAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGG
* * ** * * * * * *
349726 ATTGTTTTACATTTTTGGTTAAAATATGCAAGGATTTATTGTCTACCTCTGA-AAACATGAAGTA
385 ATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCT-TGAGAAACGTGAAGCA
* * * *
349790 AAACCCATCCATTAGAGAGAAAAGTCCATTTATAGCCACTCAAGCCTTTGAAAGCCTTATTTCTC
449 AAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * *
349855 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAATTAGATATTTTTACATTTTAGGTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * ** *
349920 ATATGCTATAGTTGAATGTTTACCTTGGGAAACATGAAGCAAAAGCCATCCATCAGAGAGAAATG
66 ATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
* *
349985 TCCATTTATAGTCACTCAAGCCTTTGGAAGCCTTATTGCTCGCTTTAAATGGTTTTATATTCTCA
131 TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
* ** ** *
350050 TAATTGATTTTAAATTAGATTTTTTTTTATTTTTTCTTAAAATATGCTATAATTGAACGTCTGCC
196 TAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
* * * * *
350115 TCAAGAAACGTGAAGCAAAAGCCATCCATGGGATATAAAAGTCCATTTATTA-TCACTCAAACCT
261 TCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTA-TAGTCACTCAAGCCT
* * * * ** *
350179 TTGAAAGGCTTATTGCTCG-TTATAAATTGTTTTATATTCTTGTAATTGATTTTAAGTTAGATTT
325 TTAAAAGCCTTATTACTCGCTT-TAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTT
* * * ** * * *
350243 TTTTATATTTTTAGTTAAAATAT-CTAGAATTGAACCTTTGCCTTGAGAAATGTGAAGGAAAATC
389 TTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAGC
* * **
350307 CATCCATGGGAGAGAAAAGTCCATTTATAGTCACTTAAGCCTCTCAAAAGCCTTATTACTC
454 CATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCT-TTGAAAGCCTTATTACTC
* * * * * *
350368 ACTTTAAATGATTTTATATTTTCATAATTGAATTTAAGTTAGATTTTTTTACATTTTTGTTTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* *
350433 ATATG-TAATAATTTAATGTCTACCTCTG-GAAACATGAAGCAAAACCCATCCATTGGAGAGAAA
66 ATATGCT-ATAATTGAATGTCTACCTC-GAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAA
* * * *** *
350496 AGTCCATTTATAGTTACCCAAGCCTTTAAAATTTTTATTACTCGCTTTAAATTGTTTTATATTCT
129 AGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
* * * *
350561 CATAATTGATTTTAAGTTAAATTTTTTTACATTTTTGGTTAAAATATGTTATAATTGATTGTTTG
194 CATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTG
* *
350626 CCTTAAGAAACATGAAGCAAAAGCCATCCATTGGTA-AG-AAAGTTCATTTATAGTCACTCAAGC
259 CCTCAAGAAACATGAAGCAAAAGCCATCCATTGG-AGAGAAAAGTCCATTTATAGTCACTCAAGC
* * * * **
350689 CTTTGAAAGGCTTATTACTCGCTTTAAGTGGTTTTATATTCTCATAATTAATTTTAAGTAAG-TT
323 CTTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATT
** ** * * * *
350753 TTTTTATTTTTTTTATTAAAATATG-TCATAATTGAAGGTTTTCCTCGAGAAACATGAAGCAAAA
388 TTTTTACATTTTTGGTTAAAATATGCT-ATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAA
* * ** *
350817 GCCATCCATGGGAGAGAAAAGTCCATTTATAGTCACTTAAGCCTTCCAAAAGCCTTA-TACTT
452 GCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTT-TGAAAGCCTTATTACTC
** * * **
350879 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTGCGTTGGA-TATTTTGCATTTTTCATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * **
350943 ATATTCTAGAATTAAAAT-T-TACCTTGAGAAACTTGAAGCAAAAGCCATCCATAAGAGAGAAAA
66 ATATGCTATAATT-GAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* *
351006 GTCCATTTATAGTCACTCAAGCCTTTGAAAAGCCTTATTACTTGCTTTAAATGGTTATATATTCT
130 GTCCATTTATAGTCACTCAAGCCTTTG-AAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCT
** * * * *
351071 TGTAATTGATTTTAAGTTAGAATTTTTTACATTTTAGATTAAAATATGCTATAATTGAATGTCTA
194 CATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTG
* * * *
351136 CATCAAGAAACATGAAGCAGAAGCCATCCATTGTAGAGAAAAGTCAATTTATAGTCACTCAAGCC
259 CCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCC
* * * * * *
351201 TTTGAAAGTCTTATTACTCTCTTTAAATGGTTTTATATACTCATAATTGATTTTTAGTTAGATTT
324 TTTAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTT
* * * * * * * *
351266 TTTTAGATTTTTGATCAAAATGTGCTATAATTGAATGTCTGCCTTAAGAAACGTGAAGCACAAGG
389 TTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAGC
* *
351331 CATTCATCGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
454 CATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* * * **
351391 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAATTTGGATTTGTTTATATTTTTAATTAAA
1 GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
* * * * * * * * * * * **
351456 ATATGCTATTACTGAATGTTTGCCT-TATGGAACCTAAAGCAAATGCCATCTATTAGAGTCAAAA
66 ATATGCTATAATTGAATGTCTACCTCGA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAA
* * * * * * *
351520 GTCCATTTATAGTAACTTAAGCATTTAAAAGCCTTATTATTCGCTCTAAATGATTTTATATTCTC
130 GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTC
* * * * ** * *
351585 ATAATTGATGTTAAGTTGGATATTTTTACACTTTTGGTTAAAATATATTATAATTGAATGTTTAC
195 ATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGC
* * ** * **
351650 CTCAGGAAACGTGAAGCAAAAATCATCCAATGGAGAGAAAAGTATATTTATAGTCACTCAAGCC-
260 CTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCT
* *
351714 CTAGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATGTTAAGTTGGATTT
325 TTA-AAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTT
* * * *
351779 TTTTACATTTTGGGTTAAAATATGTTATAATTGAATGTTTGCCTTGAGAAACATGAAGCAAAAGT
389 TTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAGC
* * * *
351844 CATCCA-TGGA-AGAAAAAGGTGCATTTATAGTCACTCAATCCTTTGAAAGACTTATTAGTC
454 CATCCATTGGAGAG-AAAA-GTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
* *
351904 GCTTTAAATGGTTTTATTTATT-T-ATAATTGATTTTAAGTTAGATTTTTTTATATTTTTGGTTA
1 GCTTTAAATGGTTTTA--TATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTA
* * * * * *
351967 GAATATGCTATACTTGAATGTCTGCCTC-AGGAAACGTGAAGCAAAAGCCATCCAATGAAGAGAA
64 AAATATGCTATAATTGAATGTCTACCTCGA-GAAACATGAAGCAAAAGCCATCCATTGGAGAGAA
** * * * * *
352031 AAGAACATTTATAGTCACTCAAGCATTTGGAAGCCTTATTACTCACTTTAAAAGGTTTTATATTT
128 AAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTC
* * * * *
352096 TCATAATTGATTTTAACTTAGATTTTTTTACATTTTTGGTTAAAATATTCTATAGTT-AA-ATAT
193 TCATAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCT
* * * * * * * *
352159 --CT------ACCT----CAAAAGTCATTCATTAGAGAGAAAAGTCCATTTACAATCCCTAAAGC
258 GCCTCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGC
* *
352212 CTTTGAAAA-CCTTATTACTTGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTTGAT
323 CTTT-AAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGAT
* * * *
352276 TTTTTTACATTTTTAGTTAAAATATGCTATTAATT-CATGTTTG-CTTAAGGAAATGTGAAGCAA
387 TTTTTTACATTTTTGGTTAAAATATGCTA-TAATTGAATGTTTGCCTTGA-GAAACGTGAAGCAA
* *
352339 AAGCCATCCATTGGCA-AGAAAAG-CCATATATAGTCACTCCAGCCTTTGAAAGCCTTATTAC
450 AAGCCATCCATTGG-AGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTAC
352400 ACATTGGATG
Statistics
Matches: 9791, Mismatches: 2246, Indels: 711
0.77 0.18 0.06
Matches are distributed among these distances:
498 36 0.00
499 145 0.01
500 16 0.00
501 4 0.00
503 3 0.00
507 57 0.01
508 392 0.04
509 707 0.07
510 983 0.10
511 1120 0.11
512 1899 0.19
513 1835 0.19
514 960 0.10
515 822 0.08
516 106 0.01
517 6 0.00
518 4 0.00
521 2 0.00
523 3 0.00
524 2 0.00
526 4 0.00
527 5 0.00
528 2 0.00
529 1 0.00
531 2 0.00
532 5 0.00
533 1 0.00
536 2 0.00
538 1 0.00
541 2 0.00
542 17 0.00
543 11 0.00
544 7 0.00
545 4 0.00
546 5 0.00
548 1 0.00
550 5 0.00
551 10 0.00
552 1 0.00
553 2 0.00
555 2 0.00
556 123 0.01
557 177 0.02
558 4 0.00
561 1 0.00
562 5 0.00
563 1 0.00
565 1 0.00
567 1 0.00
570 2 0.00
572 2 0.00
575 2 0.00
578 3 0.00
580 4 0.00
581 199 0.02
582 62 0.01
583 12 0.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.38
Consensus pattern (513 bp):
GCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTTTTACATTTTTGGTTAAA
ATATGCTATAATTGAATGTCTACCTCGAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAG
TCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCA
TAATTGATTTTAAGTTAGATTTTTTTACATTTTTGGTTAAAATATGCTATAATTGAATGTCTGCC
TCAAGAAACATGAAGCAAAAGCCATCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTT
TAAAAGCCTTATTACTCGCTTTAAATGGTTTTATATTCTCATAATTGATTTTAAGTTGGATTTTT
TTACATTTTTGGTTAAAATATGCTATAATTGAATGTTTGCCTTGAGAAACGTGAAGCAAAAGCCA
TCCATTGGAGAGAAAAGTCCATTTATAGTCACTCAAGCCTTTGAAAGCCTTATTACTC
Found at i:362270 original size:14 final size:15
Alignment explanation
Indices: 362251--362284 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
362241 AAAAATTAAA
362251 GAAAAAAT-AAAGTT
1 GAAAAAATCAAAGTT
*
362265 GAAAAAATCAAATTT
1 GAAAAAATCAAAGTT
362280 GAAAA
1 GAAAA
362285 GCCTAGGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.21
Consensus pattern (15 bp):
GAAAAAATCAAAGTT
Found at i:372029 original size:73 final size:73
Alignment explanation
Indices: 371892--372038 Score: 163
Period size: 73 Copynumber: 2.0 Consensus size: 73
371882 AAGTCGTCTC
* * * *
371892 TCTCTGAGCCTAGTTTTTGGCAATAGGCTCTTAGTCAACTAACAAAACTTCTTAATCAATTAAGT
1 TCTCTGAACCTAATTTTTGGCAATAAGCTCTTAGTCAACTAACAAAACTTCTTAATCAACTAAG-
371957 TGTT-TCTG
65 TGTTCTCTG
* ** ** * *
371965 TCTCTGAACCTAATTTTTGGCAGTAAGCTCTTAGTTGACTAACATTA-TCTCTTAGTCGACTAAG
1 TCTCTGAACCTAATTTTTGGCAATAAGCTCTTAGTCAACTAACAAAACT-TCTTAATCAACTAAG
372029 TGTTCTCTG
65 TGTTCTCTG
372038 T
1 T
372039 TTCACAGTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
72 5 0.08
73 56 0.92
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (73 bp):
TCTCTGAACCTAATTTTTGGCAATAAGCTCTTAGTCAACTAACAAAACTTCTTAATCAACTAAGT
GTTCTCTG
Found at i:382077 original size:77 final size:76
Alignment explanation
Indices: 381985--382147 Score: 247
Period size: 77 Copynumber: 2.1 Consensus size: 76
381975 TGAATTTTCC
* * *
381985 AAATTAAAATGCTATCCTTAATTTTTCAAATTCACTTTTAAGTAGGAAACTATTTCCTATACTTT
1 AAATTAAAATGCTATCCTTAATTTTACAAATTCACTTTAAAGTAGGAAACAATTTCCTAT--TTT
382050 TATGAATCA-CTA
64 TATGAATCACCTA
* **
382062 AAATTAAAATTCTATCCTTAATTTTAGGAATTCACTTTAAAGTAGGAAACAATTTCCTATTTTTA
1 AAATTAAAATGCTATCCTTAATTTTACAAATTCACTTTAAAGTAGGAAACAATTTCCTATTTTTA
382127 TGAATCACCTA
66 TGAATCACCTA
382138 AAATTAAAAT
1 AAATTAAAAT
382148 AGATGGCATT
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
75 12 0.15
76 13 0.16
77 54 0.68
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (76 bp):
AAATTAAAATGCTATCCTTAATTTTACAAATTCACTTTAAAGTAGGAAACAATTTCCTATTTTTA
TGAATCACCTA
Found at i:391164 original size:10 final size:11
Alignment explanation
Indices: 391139--391167 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
391129 TTTTTAAGCC
391139 AACAAAAGAGA
1 AACAAAAGAGA
391150 AACAAAAGA-A
1 AACAAAAGAGA
391160 AACAAAAG
1 AACAAAAG
391168 GTTTTTCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.76, C:0.10, G:0.14, T:0.00
Consensus pattern (11 bp):
AACAAAAGAGA
Found at i:394304 original size:35 final size:35
Alignment explanation
Indices: 394223--394404 Score: 180
Period size: 35 Copynumber: 5.3 Consensus size: 35
394213 ATTATTATTT
*
394223 AATTTAATC-ATTAGGCTCAATAA-TTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* *
394256 AA-TTAATCAATTAGGCCCAATAACTTGA-TAAATA
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAA-C
****
394290 AATTTAATCAATTAGGCCTCAATAACTTAATTGTTT
1 AATTTAATCAATTAGGCC-CAATAACTTAATTAAAC
* * *
394326 AATTTAATTAATTAGGCCTAATGACTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
* *
394361 AATTTAATGAATTAGG--C-ACAACTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
394393 AATTTTAATCAA
1 AA-TTTAATCAA
394405 GTGCTTGATA
Statistics
Matches: 122, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
32 21 0.17
33 27 0.22
34 5 0.04
35 41 0.34
36 27 0.22
37 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.36
Consensus pattern (35 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAAC
Found at i:394365 original size:71 final size:69
Alignment explanation
Indices: 394223--394377 Score: 172
Period size: 71 Copynumber: 2.2 Consensus size: 69
394213 ATTATTATTT
*
394223 AATTTAATC-ATTAGG-CTCAATAATTAATTAAACAATTAATCAATTAGGCCCAATAACTTGATA
1 AATTTAATCAATTAGGCCTCAATAATTAATTAAACAATTAATCAATTAGGCCCAATAACTTAATA
394286 AATA
66 AATA
**** * * *
394290 AATTTAATCAATTAGGCCTCAATAACTTAATTGTTTAATTTAATTAATTAGGCCTAATGACTTAA
1 AATTTAATCAATTAGGCCTCAATAA-TTAATTAAACAA-TTAATCAATTAGGCCCAATAACTTAA
*
394355 TTAAA-C
64 -TAAATA
*
394361 AATTTAATGAATTAGGC
1 AATTTAATCAATTAGGC
394378 ACAACTTAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
67 9 0.12
68 6 0.08
69 8 0.11
70 8 0.11
71 38 0.52
72 4 0.05
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (69 bp):
AATTTAATCAATTAGGCCTCAATAATTAATTAAACAATTAATCAATTAGGCCCAATAACTTAATA
AATA
Found at i:397432 original size:23 final size:23
Alignment explanation
Indices: 397341--397519 Score: 114
Period size: 23 Copynumber: 7.9 Consensus size: 23
397331 TTGGTGACAT
* * *
397341 GATTCCATAATAACTAGTCATGT
1 GATTCCATATTAACTAGTCACGC
* * * *
397364 GACTCCATATTTACTACTCATGC
1 GATTCCATATTAACTAGTCACGC
** * * *
397387 GATTTTATAATAAATACTCACGC
1 GATTCCATATTAACTAGTCACGC
*
397410 GATTCCATATTAACTAGTTACGC
1 GATTCCATATTAACTAGTCACGC
* * *
397433 CACTCCATA-T-ACTACTCACGC
1 GATTCCATATTAACTAGTCACGC
* * *
397454 GA--CCTTATATTTACTACTCACGT
1 GATTCC--ATATTAACTAGTCACGC
* * *
397477 GATTTCATATTTACTAGTCACGT
1 GATTCCATATTAACTAGTCACGC
397500 GATTCCATATTAACTAGTCA
1 GATTCCATATTAACTAGTCA
397520 AGTGATTCAA
Statistics
Matches: 122, Mismatches: 28, Indels: 12
0.75 0.17 0.07
Matches are distributed among these distances:
19 2 0.02
21 13 0.11
22 2 0.02
23 104 0.85
25 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (23 bp):
GATTCCATATTAACTAGTCACGC
Found at i:397507 original size:67 final size:67
Alignment explanation
Indices: 397341--397509 Score: 185
Period size: 67 Copynumber: 2.5 Consensus size: 67
397331 TTGGTGACAT
* * * **
397341 GATTCCATAATAACTAGTCATGTGACTCCATATTTACTACTCATGCGATTTTATAATAAATACTC
1 GATTCCATATTAACTAGTCACGTGACTCCATA--TACTACTCACGCGACCTTATAATAAATACTC
397406 ACGC
64 ACGC
* ** * * *
397410 GATTCCATATTAACTAGTTACGCCACTCCATATACTACTCACGCGACCTTATATTTACTACTCAC
1 GATTCCATATTAACTAGTCACGTGACTCCATATACTACTCACGCGACCTTATAATAAATACTCAC
*
397475 GT
66 GC
* * *
397477 GATTTCATATTTACTAGTCACGTGATTCCATAT
1 GATTCCATATTAACTAGTCACGTGACTCCATAT
397510 TAACTAGTCA
Statistics
Matches: 82, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
67 55 0.67
69 27 0.33
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (67 bp):
GATTCCATATTAACTAGTCACGTGACTCCATATACTACTCACGCGACCTTATAATAAATACTCAC
GC
Found at i:397570 original size:23 final size:23
Alignment explanation
Indices: 397544--397604 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
397534 TTGTAGTTGT
* *
397544 GTGATTCTATATCAAGTACTCAC
1 GTGATTCAATATCAAATACTCAC
* **
397567 GTGATTCCATATCAAATACTTGC
1 GTGATTCAATATCAAATACTCAC
*
397590 GTGAATCAATATCAA
1 GTGATTCAATATCAA
397605 CTGGTGATGC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (23 bp):
GTGATTCAATATCAAATACTCAC
Found at i:397620 original size:46 final size:46
Alignment explanation
Indices: 397569--397698 Score: 176
Period size: 46 Copynumber: 2.8 Consensus size: 46
397559 GTACTCACGT
* *
397569 GATTCCATATCAAATACTTGCGTG-AA-TCAATA-TCAACTGGTGATGC
1 GATTCCATATCAAACA-TT-CATGCAATTCAATAGT-AACTGGTGATGC
*
397615 GATTCCATATCAACCATTCATGCAATTCAATAGTAACTGGTGATGC
1 GATTCCATATCAAACATTCATGCAATTCAATAGTAACTGGTGATGC
*
397661 GATTCCATATCAACCATTCATGCAATTCAATAGTAACT
1 GATTCCATATCAAACATTCATGCAATTCAATAGTAACT
397699 AGTTACAACC
Statistics
Matches: 78, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
44 3 0.04
45 4 0.05
46 70 0.90
47 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (46 bp):
GATTCCATATCAAACATTCATGCAATTCAATAGTAACTGGTGATGC
Found at i:397624 original size:23 final size:23
Alignment explanation
Indices: 397598--397674 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
397588 GCGTGAATCA
397598 ATATCAACTGGTGATGCGATTCC
1 ATATCAACTGGTGATGCGATTCC
*** * * *
397621 ATATCAACCATTCATGCAATTCA
1 ATATCAACTGGTGATGCGATTCC
397644 ATAGT-AACTGGTGATGCGATTCC
1 ATA-TCAACTGGTGATGCGATTCC
397667 ATATCAAC
1 ATATCAAC
397675 CATTCATGCA
Statistics
Matches: 40, Mismatches: 12, Indels: 4
0.71 0.21 0.07
Matches are distributed among these distances:
22 1 0.03
23 38 0.95
24 1 0.03
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (23 bp):
ATATCAACTGGTGATGCGATTCC
Found at i:397683 original size:23 final size:23
Alignment explanation
Indices: 397611--397688 Score: 77
Period size: 23 Copynumber: 3.4 Consensus size: 23
397601 TCAACTGGTG
*
397611 ATGCGATTCCATATCAACCATTC
1 ATGCAATTCCATATCAACCATTC
* *** *
397634 ATGCAATTCAATAGT-AACTGGTG
1 ATGCAATTCCATA-TCAACCATTC
*
397657 ATGCGATTCCATATCAACCATTC
1 ATGCAATTCCATATCAACCATTC
397680 ATGCAATTC
1 ATGCAATTC
397689 AATAGTAACT
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
22 1 0.03
23 38 0.95
24 1 0.03
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (23 bp):
ATGCAATTCCATATCAACCATTC
Found at i:397951 original size:26 final size:26
Alignment explanation
Indices: 397910--397980 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
397900 TTTTTTCTTT
*
397910 TTTGTTAAATGGTACAAAAAAGAAAAA
1 TTTG-TAAATGATACAAAAAAGAAAAA
* *
397937 TTTGTAAATGATACAACAAAGAATAA
1 TTTGTAAATGATACAAAAAAGAAAAA
* * *
397963 TATGGACATGATACAAAA
1 TTTGTAAATGATACAAAA
397981 CAATGTTATT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 33 0.89
27 4 0.11
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (26 bp):
TTTGTAAATGATACAAAAAAGAAAAA
Found at i:404684 original size:14 final size:14
Alignment explanation
Indices: 404650--404687 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
404640 ATTCTAACTC
404650 AATTTATTTTCTCT
1 AATTTATTTTCTCT
*
404664 AAGTTATTTTCATCT
1 AATTTATTTTC-TCT
404679 -ATTTATTTT
1 AATTTATTTT
404688 TTATTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 18 0.86
15 3 0.14
ACGTcount: A:0.24, C:0.11, G:0.03, T:0.63
Consensus pattern (14 bp):
AATTTATTTTCTCT
Done.