Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397653.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5142.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2374
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28


Found at i:822 original size:40 final size:41

Alignment explanation


    Indices: 764--843  Score: 117
    Period size: 41  Copynumber: 2.0  Consensus size: 41

        754 TTGTGAAAGA

                        **              *            
        764 CACCAATCATGGTGAGGTTA-AAAACCCTACTAAGGTGAAC
          1 CACCAATCATGGCAAGGTTAGAAAACCCCACTAAGGTGAAC

                    *                               
        804 CACCAATCTTGGCAAGGTTAGAAAACCCCACTAAGGTGAA
          1 CACCAATCATGGCAAGGTTAGAAAACCCCACTAAGGTGAA

        844 GAATAGCCAA


Statistics
Matches: 35,  Mismatches: 4, Indels: 1
        0.88            0.10        0.03

Matches are distributed among these distances:
  40   17  0.49
  41   18  0.51

ACGTcount: A:0.38, C:0.24, G:0.20, T:0.19


Consensus pattern (41 bp):   
CACCAATCATGGCAAGGTTAGAAAACCCCACTAAGGTGAAC

Found at i:2249 original size:15 final size:15

Alignment explanation


    Indices: 2229--2264  Score: 72
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       2219 TAGTGGGAAA

                           
       2229 CATGTGGTACCCCAC
          1 CATGTGGTACCCCAC

                           
       2244 CATGTGGTACCCCAC
          1 CATGTGGTACCCCAC

                  
       2259 CATGTG
          1 CATGTG

       2265 AAAGTTGATA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.19, C:0.36, G:0.22, T:0.22


Consensus pattern (15 bp):   
CATGTGGTACCCCAC
Done.