Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4400.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.25, C:0.10, G:0.09, T:0.27

Warning! 390 characters in sequence are not A, C, G, or T


Found at i:344 original size:171 final size:171

Alignment explanation


    Indices: 4--350  Score: 364
    Period size: 171  Copynumber: 2.0  Consensus size: 171

          1 TTT

                            *          **                           *        
          4 AAAAGCCTTATTAAACGCTTTAAATAGTTTTCTAATCTCATAATTGATTTTAAGTTGAATTTTTT
          1 AAAAGCCTTATTAAACACTTTAAATAGAATTCTAATCTCATAATTGATTTTAAGTTCAATTTTTT

                      *     **              *                                
         69 AGTATTTTTGGTTAAAGTAGACTACAACTGAATGTCTACCTCGAGAAACGTGAAGAAAAAAGCAT
         66 AGTATTTTTGCTTAAAACAGACTACAACTGAAGGTCTACCTCGAGAAACGTGAAGAAAAAAGCAT

                       *           *     *  *        
        134 TCATTTGGAAGGAAAGCTCATTTCTACTCTCCTATTCCTTC
        131 TCATTTGGAAGAAAAGCTCATTTATACTCACCCATTCCTTC

                         **          *                           *           
        175 AAAAGCCTTATTACTCACTTTAAATGGAATTCTAATCTTCA-AATTGATTTTAGGTTCAAGTTTT
          1 AAAAGCCTTATTAAACACTTTAAATAGAATTCTAATC-TCATAATTGATTTTAAGTTCAA-TTTT

                                ** *  *  *       *     *                     
        239 TTA-TATTTTTGCTTAAAACCTATTATAATTGAAGGTTTACCTTGAGAAACGTG-AGAAAAAAAT
         64 TTAGTATTTTTGCTTAAAACAGACTACAACTGAAGGTCTACCTCGAGAAACGTGAAG-AAAAAA-

                        *                   *             *
        302 G-ATTCA-TTGATAAGAAAAG-TCCATTTATAGTCACCCATTCCTTT
        127 GCATTCATTTG-GAAGAAAAGCT-CATTTATACTCACCCATTCCTTC

                 
        346 AAAAG
          1 AAAAG

        351 GTTTATNNNN


Statistics
Matches: 144,  Mismatches: 26, Indels: 12
        0.79            0.14        0.07

Matches are distributed among these distances:
 170    6  0.04
 171  127  0.88
 172   11  0.08

ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37


Consensus pattern (171 bp):   
AAAAGCCTTATTAAACACTTTAAATAGAATTCTAATCTCATAATTGATTTTAAGTTCAATTTTTT
AGTATTTTTGCTTAAAACAGACTACAACTGAAGGTCTACCTCGAGAAACGTGAAGAAAAAAGCAT
TCATTTGGAAGAAAAGCTCATTTATACTCACCCATTCCTTC
Done.