Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397656.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2046.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2198
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.29

Warning! 32 characters in sequence are not A, C, G, or T


Found at i:1845 original size:23 final size:25

Alignment explanation


    Indices: 1800--1845  Score: 60
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       1790 TTATGGCCTA

                           *         
       1800 GCCACAAATATCATCCCATGACCTT
          1 GCCACAAATATCATCACATGACCTT

                  *                
       1825 GCCACATATAT-ATCACA-GACC
          1 GCCACAAATATCATCACATGACC

       1846 ATGGCCCAAG


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  23    4  0.21
  24    5  0.26
  25   10  0.53

ACGTcount: A:0.35, C:0.35, G:0.09, T:0.22


Consensus pattern (25 bp):   
GCCACAAATATCATCACATGACCTT
Done.