Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401292.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4434.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2559
ACGTcount: A:0.29, C:0.07, G:0.09, T:0.24

Warning! 776 characters in sequence are not A, C, G, or T


Found at i:306 original size:171 final size:169

Alignment explanation


    Indices: 123--703  Score: 624
    Period size: 171  Copynumber: 3.4  Consensus size: 169

        113 CTAGTAAGAT

                 *             *                     *        *        *     
        123 ATTCACTTATAATCTATTTTAATAAAAAATATAAAAAAATTCAAATTAAAGTCAATTGTAATGTT
          1 ATTCAATTATAATCTATTTCAATAAAAAATATAAAAAAATTAAAATTAAAATCAATTGTGA-GTT

                                               *********                     
        188 ATAAAAATATTTAAAGCGAGTAATAAGGCTTTCGNNNNNNNNNNTGACAATAAATGGACTTTTCT
         65 ATAAAAATATTTAAAGCGAGTAATAAGGCTTTCG-AAGGCATGGTGACAATAAATGGACTTTTCT

              *          *                     *     
        253 TGTCAATGGATATTTTTTTCTTCACGTTTCTCAAGACAGGC
        129 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGGC

                         *                                *                  
        294 ATTCAATTATAATTTATTTCAATAAAAAATATAAAAAAATTAAAATGAAAATCAATTGTGAGGTT
          1 ATTCAATTATAATCTATTTCAATAAAAAATATAAAAAAATTAAAATTAAAATCAATTGTGA-GTT

                                           *            *********            
        359 ATAAAAATATTTAAAGCGAGTAATAAGGCTTCCGAAGGCATGGNNNNNNNNNNATGGACTTTTCT
         65 ATAAAAATATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGG-TGACAATAAATGGACTTTTCT

                                 *              *    
        424 TGCCAATGGATATCTTTTTCTCCACGTTTCTCAAGGTAGGC
        129 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGGC

                                        *            *                       
        465 ATTCAATTATAATCTATTTCAATAAAAAGTATAAAAAAATTCAAATTAAAATCAATTGTGAGTTT
          1 ATTCAATTATAATCTATTTCAATAAAAAATATAAAAAAATTAAAATTAAAATCAATTGTGAG-TT

                                                   **********                
        530 ATAAAAATATTTAAAGCGAGTAATAAGGCTTTCGAAGGNNNNNNNNNNTATAAATGGACTTTTCT
         65 ATAAAAATATTTAAAGCGAGTAATAAGGCTTTCGAAGG-CATGGTGACAATAAATGGACTTTTCT

                                        **      * ** 
        595 TGCCAATGGATATCTTTTTCTTCACGTTAATCAAGGGAAAC
        129 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGGC

                           *   *                                *    *       
        636 ATTCAATTATAATCTGTTTTAATAAAAAATAT-AAAAAATTAAAATTAAAATTAATTATGAGGTT
          1 ATTCAATTATAATCTATTTCAATAAAAAATATAAAAAAATTAAAATTAAAATCAATTGTGA-GTT

                
        700 ATAA
         65 ATAA

        704 NNNNNNNNNN


Statistics
Matches: 347,  Mismatches: 59, Indels: 9
        0.84            0.14        0.02

Matches are distributed among these distances:
 170   32  0.09
 171  315  0.91

ACGTcount: A:0.39, C:0.10, G:0.12, T:0.34


Consensus pattern (169 bp):   
ATTCAATTATAATCTATTTCAATAAAAAATATAAAAAAATTAAAATTAAAATCAATTGTGAGTTA
TAAAAATATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGGTGACAATAAATGGACTTTTCTTG
CCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGGC
Done.