Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401293.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4435.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6693
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:1091 original size:30 final size:30

Alignment explanation


    Indices: 1050--1146  Score: 124
    Period size: 30  Copynumber: 3.3  Consensus size: 30

       1040 AATCATTAAT

                                      *   
       1050 TATAAAAATTTATTTAATGTAAAATATAAA
          1 TATAAAAATTTATTTAATGTAAAATAAAAA

                  *           *           
       1080 TATAAATATTTATTTAATTTAAAATAAAAA
          1 TATAAAAATTTATTTAATGTAAAATAAAAA

                    *   *  *     *        
       1110 TATAAAAACTTAATTGA-GTACAATAAAAA
          1 TATAAAAATTTATTTAATGTAAAATAAAAA

                    
       1139 TATAAAAA
          1 TATAAAAA

       1147 GGTTATTTGA


Statistics
Matches: 58,  Mismatches: 9, Indels: 1
        0.85            0.13        0.01

Matches are distributed among these distances:
  29   18  0.31
  30   40  0.69

ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36


Consensus pattern (30 bp):   
TATAAAAATTTATTTAATGTAAAATAAAAA
Done.