Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401296.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4438.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1788
ACGTcount: A:0.16, C:0.07, G:0.07, T:0.17

Warning! 932 characters in sequence are not A, C, G, or T


Found at i:1392 original size:29 final size:29

Alignment explanation


    Indices: 1350--1453  Score: 95
    Period size: 29  Copynumber: 3.6  Consensus size: 29

       1340 TTTAACCCTG

                  *                 *     
       1350 TTAGGTACCTTTGCACCT-TCTGAGCTTTA
          1 TTAGGTGCCTTTGCA-CTATCTGAACTTTA

                               *         
       1379 TTAGGTGCCTTTGCACTATTTGAACTTTA
          1 TTAGGTGCCTTTGCACTATCTGAACTTTA

                       * *      *        *
       1408 TTAGGTGCCTTAGTATCT-TTTGAACTTTG
          1 TTAGGTGCCTTTGCA-CTATCTGAACTTTA

                   *   *     
       1437 TTAGGTGGCTTAGCACT
          1 TTAGGTGCCTTTGCACT

       1454 TATGGAACTT


Statistics
Matches: 65,  Mismatches: 8, Indels: 5
        0.83            0.10        0.06

Matches are distributed among these distances:
  28    4  0.06
  29   59  0.91
  30    2  0.03

ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43


Consensus pattern (29 bp):   
TTAGGTGCCTTTGCACTATCTGAACTTTA

Found at i:1466 original size:29 final size:29

Alignment explanation


    Indices: 1374--1464  Score: 105
    Period size: 29  Copynumber: 3.1  Consensus size: 29

       1364 ACCTTCTGAG

                            *             
       1374 CTTTATTAGGTGCCTTTGCAC-TATTTGAA
          1 CTTTATTAGGTGCCTTAGCACTTA-TTGAA

                              *           
       1403 CTTTATTAGGTGCCTTAGTATCTT-TTGAA
          1 CTTTATTAGGTGCCTTAGCA-CTTATTGAA

                *       *            *   
       1432 CTTTGTTAGGTGGCTTAGCACTTATGGAA
          1 CTTTATTAGGTGCCTTAGCACTTATTGAA

                
       1461 CTTT
          1 CTTT

       1465 GTAAGGTGTG


Statistics
Matches: 53,  Mismatches: 6, Indels: 6
        0.82            0.09        0.09

Matches are distributed among these distances:
  28    3  0.06
  29   48  0.91
  30    1  0.02
  31    1  0.02

ACGTcount: A:0.20, C:0.15, G:0.20, T:0.45


Consensus pattern (29 bp):   
CTTTATTAGGTGCCTTAGCACTTATTGAA
Done.