Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401304.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4445.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1395
ACGTcount: A:0.23, C:0.07, G:0.09, T:0.21

Warning! 554 characters in sequence are not A, C, G, or T


Found at i:298 original size:171 final size:160

Alignment explanation


    Indices: 9--316  Score: 316
    Period size: 171  Copynumber: 1.9  Consensus size: 160

          1 TAAAACCA

                                        *    *                       *       
          9 TTTAAAGCGAGTAATAACCTTTTTGAAATAATGGGTAACTCTAAATAGACTTTTCTTGTCAATGA
          1 TTTAAAGCGAGTAATAACCTTTTTGAAAGAATGCGTAACTCTAAATAGACTTTTCTTCTCAATGA

              *         *              *           *     **       *          
         74 ATTCTTGTTTCTTCATAGTTCTCAAGGTAGAAATTCAATTATAGTCTGTTTTAAGAAAAAATGTA
         66 ATGCTTGTTTCTGCATAGTTCTCAAGGAAGAAATTCAATAATAGTAAGTTTTAACAAAAAATGTA

                                                     
        139 AAACAATTGAACNNNNNNNNNNTTATGAGATTATAAAATCG
        131 AAA-AATTGAAC----------TTATGAGATTATAAAATCG

                             *         *                  *                  
        180 TTTAAAGCGAGTAATAAGCTTTTTGAAGGAATGCGTAACTCTAAATGGACTTTTCTTCTCAATGA
          1 TTTAAAGCGAGTAATAACCTTTTTGAAAGAATGCGTAACTCTAAATAGACTTTTCTTCTCAATGA

               *  *                               *                    *     
        245 ATGGTTTTTTAC-GCAT-GTTTCTCAAGGCAAG-AATTTAATAATAGTAAGTTTTAACAGAAAAT
         66 ATGCTTGTTT-CTGCATAG-TTCTCAAGG-AAGAAATTCAATAATAGTAAGTTTTAACAAAAAAT

                      
        307 GTAAAAAATT
        128 GTAAAAAATT

        317 TCATATTAAA


Statistics
Matches: 117,  Mismatches: 17, Indels: 7
        0.83            0.12        0.05

Matches are distributed among these distances:
 170    5  0.04
 171  109  0.93
 172    3  0.03

ACGTcount: A:0.36, C:0.11, G:0.15, T:0.35


Consensus pattern (160 bp):   
TTTAAAGCGAGTAATAACCTTTTTGAAAGAATGCGTAACTCTAAATAGACTTTTCTTCTCAATGA
ATGCTTGTTTCTGCATAGTTCTCAAGGAAGAAATTCAATAATAGTAAGTTTTAACAAAAAATGTA
AAAAATTGAACTTATGAGATTATAAAATCG
Done.