Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401317.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4456.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 778

Length: 1297
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.41

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:866 original size:18 final size:20

Alignment explanation


    Indices: 843--890  Score: 64
    Period size: 18  Copynumber: 2.5  Consensus size: 20

        833 TGAAAATATT

                                
        843 TAAATATTATTTAA-TAT-A
          1 TAAATATTATTTAACTATAA

             *       *          
        861 TTAATATTAGTTAACTATAA
          1 TAAATATTATTTAACTATAA

                      
        881 TAAATATTAT
          1 TAAATATTAT

        891 AAACAANNNN


Statistics
Matches: 24,  Mismatches: 4, Indels: 2
        0.80            0.13        0.07

Matches are distributed among these distances:
  18   12  0.50
  19    3  0.12
  20    9  0.38

ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48


Consensus pattern (20 bp):   
TAAATATTATTTAACTATAA
Done.