Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401321.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_446.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14510

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
428--717
156
1.9
156
85
0
409
38
10
15
35
1.82
568--1284
172
4.2
171
79
5
734
40
11
12
35
1.80
576--1275
344
2.0
342
82
4
863
40
11
13
35
1.80
3098--3728
341
1.9
331
79
5
639
38
9
12
36
1.75
4027--4443
171
2.4
170
79
8
409
38
10
13
34
1.80
5980--8361
171
14.0
173
79
6
2251
38
11
13
35
1.81
5980--8363
340
7.0
338
79
6
2335
38
11
13
35
1.81
8611--8933
170
2.0
161
78
13
327
38
13
11
33
1.81
10572--11022
171
2.6
167
77
9
428
36
12
12
36
1.81
11505--12056
171
3.2
169
76
3
489
33
13
10
38
1.79
12312--12645
171
2.0
162
76
10
300
35
11
13
37
1.80
12661--12993
171
2.0
161
80
10
242
36
12
12
36
1.81

Tables:   1

The End!