Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401342.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4479.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1880
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.22

Warning! 762 characters in sequence are not A, C, G, or T


Found at i:286 original size:171 final size:161

Alignment explanation


    Indices: 58--388  Score: 482
    Period size: 171  Copynumber: 2.0  Consensus size: 161

         48 TTATAATTTA

                                         *  *                                
         58 ATAATTCATTTTAAGTTGACTTTTTTTATTTTTTTCTTAAAAAAAGACAATAATTGAATGTCTAT
          1 ATAATTCATTTTAAGTTGACTTTTTTTATATTCTTCTTAAAAAAAGACAATAATTGAATGTCTAT

                                                *                            
        123 CTCAAGAAAAGTGAAGAAAAAGCCATTGATTGAGAAGAAAAGTCTATTTATAGTCACCCATTTCT
         66 CTCAAGAAAAGTGAAGAAAAAGCCATTGATTGAGAAAAAAAGTCTATTTATAGTCACCCATTTCT

             *                 *                     
        188 TGAAAAGGCTTATTACTCGCTTTAAATAGTNNNNNNNNNNC
        131 TCAAAAGGCTTATTACTCGATTTAAATAGT----------C

                  *                               *    *                     
        229 ATAATTGATTTTAAGTTGACTTTTTTTATATTCTTCTTTAAAACAGACAATAATTGAATGTCTAT
          1 ATAATTCATTTTAAGTTGACTTTTTTTATATTCTTCTTAAAAAAAGACAATAATTGAATGTCTAT

                     *   *                                                   
        294 CTCAAGAAAGGTGGAGAAAAAGCCATTGATTGAGAAAAAAAGTCTATTTATAGTCACCCATTTCT
         66 CTCAAGAAAAGTGAAGAAAAAGCCATTGATTGAGAAAAAAAGTCTATTTATAGTCACCCATTTCT

                                          
        359 TCAAAAGGCTTATTACTCGATTTAAATAGT
        131 TCAAAAGGCTTATTACTCGATTTAAATAGT

        389 TTTATAATCT


Statistics
Matches: 150,  Mismatches: 10, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 171  150  1.00

ACGTcount: A:0.36, C:0.12, G:0.13, T:0.36


Consensus pattern (161 bp):   
ATAATTCATTTTAAGTTGACTTTTTTTATATTCTTCTTAAAAAAAGACAATAATTGAATGTCTAT
CTCAAGAAAAGTGAAGAAAAAGCCATTGATTGAGAAAAAAAGTCTATTTATAGTCACCCATTTCT
TCAAAAGGCTTATTACTCGATTTAAATAGTC
Done.