Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401343.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_448.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1686
ACGTcount: A:0.15, C:0.05, G:0.06, T:0.16

Warning! 990 characters in sequence are not A, C, G, or T


Found at i:899 original size:40 final size:39

Alignment explanation


    Indices: 845--920  Score: 116
    Period size: 40  Copynumber: 1.9  Consensus size: 39

        835 TTAAATGAAT

                               *                   
        845 TTATAATTTATAAATAATTTTAAATCGAAATCTTTTTTC
          1 TTATAATTTATAAATAATTCTAAATCGAAATCTTTTTTC

                            *         *          
        884 TTATAATCTTATAAATGATTCTAAATTGAAATCTTTT
          1 TTATAAT-TTATAAATAATTCTAAATCGAAATCTTTT

        921 CAAATTTGGC


Statistics
Matches: 33,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  39    7  0.21
  40   26  0.79

ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50


Consensus pattern (39 bp):   
TTATAATTTATAAATAATTCTAAATCGAAATCTTTTTTC
Done.