Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018401344.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4480.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3460
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.30
Warning! 506 characters in sequence are not A, C, G, or T
Found at i:390 original size:172 final size:170
Alignment explanation
Indices: 152--966 Score: 796
Period size: 172 Copynumber: 4.8 Consensus size: 170
142 NNNNNNNNNN
* * * * * * * *
152 AACCATTTAAAGCGAGTAATAAGACTTTTGAAGGAATAGGTGACTACAAGTAAAGTTATCTTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTATAAATACACTTTTCTTGCC
* * *
217 AATGAACAACTTTCTTTTCATGTTTCTTAAGGCAGACAATCAATTATAATTTGTTTTAA-TAAAA
66 AATGAACAGCTTT-TTTTCACGTTTCTCAAGGCAGACAATCAATTATAATTTGTTTTAACT-AAA
* * *
281 AATGTAAACAAAATTCAACTAAAAATTAATTATAAGATTATAA
129 AATGTAAA-AAAATTCAACTTAAAATCAATTATAAGATTACAA
* * * * *
324 AACTATTTAGAGTGAGTAATAAGGCTTTCAAAGGAATGGGTGACTATAAATACACTTTTTTTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTATAAATACACTTTTCTTGCC
* * * * * ***
389 AACT-AATAGC-TTTTTTCACGTCTT-TCGAGGTAAACATTCAATTATAGCCTGTTTTAACTAAA
66 AA-TGAACAGCTTTTTTTCACGT-TTCTCAAGGCAGACAATCAATTATAATTTGTTTTAACTAAA
* * * * *
451 AATATAAAAATATTGAACTTAACATCAATTATGAGATTACAA
129 AATGTAAAAAAATTCAACTTAAAATCAATTATAAGATTACAA
* ** * * * * *
493 AACCATTAAAAATGAGTAATAAAGCTTTTGAATGAATAGGTGGCTATAAATACACTTTTCTTGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTATAAATACACTTTTCTTGCC
* *
558 AATGAACAGCTTTTTTTTTCACGTTTCTCAAGGCAGACAACCAATTATAATTTGTTTTAACAAAA
66 AATGAACAGC--TTTTTTTCACGTTTCTCAAGGCAGACAATCAATTATAATTTGTTTTAACTAAA
* * * * **
623 AATGTAACAATATTCAACTTAAAATCTATTACAAGATTGTAA
129 AATGTAAAAAAATTCAACTTAAAATCAATTATAAGATTACAA
* * * * * ** *
665 AACTATTTAAAGCGAGTAAAAAAGCTTTTAAAGGTATGGGTGACTATCAATGGACTTTTCTAGCC
1 AACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTATAAATACACTTTTCTTGCC
* * *
730 AATGAATAGCTTTTTGTTCACGTTTCTCAAAGTAGACAATCAATTATAATTTGTTTTAACTAAAA
66 AATGAACAGCTTTTT-TTCACGTTTCTCAAGGCAGACAATCAATTATAATTTGTTTTAACTAAAA
* * * *
795 ATGTAAAACAATTCAACTTAAAATCAATTTTGAGAATACAA
130 ATGTAAAAAAATTCAACTTAAAATCAATTATAAGATTACAA
* * * * *
836 AACCATTTAAAGCGAGTAATAAGGCTGTTGAAA-GAATGGTTGACTCTAAGTAGACTTTTCTTGC
1 AACCATTTAAAGCGAGTAATAAGGCT-TTTAAAGGAATGGGTGACTATAAATACACTTTTCTTGC
** * * * * * * *
900 CAATGAATGGTTTTTTCTTCA-TTTTTTCTTAGGCACACAATCAATTATAATTTGATTTAACCAA
65 CAATGAACAGCTTTTT-TTCACGTTTCTC-AAGGCAGACAATCAATTATAATTTGTTTTAACTAA
964 AAA
128 AAA
967 CGAGATTATA
Statistics
Matches: 519, Mismatches: 113, Indels: 23
0.79 0.17 0.04
Matches are distributed among these distances:
168 1 0.00
169 88 0.17
170 53 0.10
171 180 0.35
172 196 0.38
173 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (170 bp):
AACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTATAAATACACTTTTCTTGCC
AATGAACAGCTTTTTTTCACGTTTCTCAAGGCAGACAATCAATTATAATTTGTTTTAACTAAAAA
TGTAAAAAAATTCAACTTAAAATCAATTATAAGATTACAA
Found at i:706 original size:341 final size:343
Alignment explanation
Indices: 152--966 Score: 950
Period size: 341 Copynumber: 2.4 Consensus size: 343
142 NNNNNNNNNN
* * * * * *
152 AACCATTTAAAGCGAGTAAT-AAGACTTTTGAAGGAATAGGTGACTACAAGTAAAGTTATCTTGC
1 AACCATTAAAAACGAGTAATAAAG-CTTTTGAAAGAATAGGTGACTATAAGTAAACTTTTCTTGC
* * * *
216 CAATGAACAAC-TTTCTTTTCATGTTTCTTAAGGCAGACAATCAATTATAATTTGTTTTAATAAA
65 CAATGAACAGCTTTTTTTTTCA-GTTTCTCAAGGCAGACAATCAATTATAATTTGTTTTAACAAA
* * * *
280 AAATGTAAACAAAATTCAACTAAAAATTAATTATAAGATTATAAAACTATTTAGAGTGAGTAATA
129 AAATGTAAACAAAATTCAACTAAAAATTAATTACAAGATTATAAAACTATTTAAAGCGAGTAAAA
* * *
345 AGGCTTTCAAAGGAATGGGTGACTATAAATACACTTTTTTTGCCAACT-AATAGC-TTTT-TTCA
194 AAGCTTTCAAAGGAATGGGTGACTATAAATACACTTTTCTAGCCAA-TGAATAGCTTTTTGTTCA
* * * * *
407 CGTCTT-TCGAGGTAAACATTCAATTATAGCCTGTTTTAACTAAAAATATAAAA-ATATTGAACT
258 CGT-TTCTCAAAGTAAACAATCAATTATAACCTGTTTTAACTAAAAATATAAAACA-ATTCAACT
* *
470 TAACATCAATTATGAGATTACAA
321 TAAAATCAATTATGAGAATACAA
* * * * *
493 AACCATTAAAAATGAGTAATAAAGCTTTTGAATGAATAGGTGGCTATAAATACACTTTTCTTGCC
1 AACCATTAAAAACGAGTAATAAAGCTTTTGAAAGAATAGGTGACTATAAGTAAACTTTTCTTGCC
*
558 AATGAACAGCTTTTTTTTTCACGTTTCTCAAGGCAGACAACCAATTATAATTTGTTTTAACAAAA
66 AATGAACAGCTTTTTTTTTCA-GTTTCTCAAGGCAGACAATCAATTATAATTTGTTTTAACAAAA
* * *
623 AATGT-AACAATATTCAACTTAAAATCT-ATTACAAGATTGTAAAACTATTTAAAGCGAGTAAAA
130 AATGTAAACAAAATTCAACTAAAAAT-TAATTACAAGATTATAAAACTATTTAAAGCGAGTAAAA
* * * **
686 AAGCTTTTAAAGGTATGGGTGACTATCAATGGACTTTTCTAGCCAATGAATAGCTTTTTGTTCAC
194 AAGCTTTCAAAGGAATGGGTGACTATAAATACACTTTTCTAGCCAATGAATAGCTTTTTGTTCAC
* ** *
751 GTTTCTCAAAGTAGACAATCAATTATAATTTGTTTTAACTAAAAATGTAAAACAATTCAACTTAA
259 GTTTCTCAAAGTAAACAATCAATTATAACCTGTTTTAACTAAAAATATAAAACAATTCAACTTAA
*
816 AATCAATTTTGAGAATACAA
324 AATCAATTATGAGAATACAA
* * * * * *
836 AACCATTTAAAGCGAGTAATAAGGCTGTTGAAAGAAT-GGTTGACTCTAAGTAGACTTTTCTTGC
1 AACCATTAAAAACGAGTAATAAAGCTTTTGAAAGAATAGG-TGACTATAAGTAAACTTTTCTTGC
* * * * * * * * *
900 CAATGAA-TGGTTTTTTCTTCATTTTTTCTTAGGCACACAATCAATTATAATTTGATTTAACCAA
65 CAATGAACAGCTTTTTTTTTCAGTTTCTC-AAGGCAGACAATCAATTATAATTTGTTTTAACAAA
964 AAA
129 AAA
967 CGAGATTATA
Statistics
Matches: 401, Mismatches: 63, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
340 1 0.00
341 158 0.39
342 110 0.27
343 131 0.33
344 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (343 bp):
AACCATTAAAAACGAGTAATAAAGCTTTTGAAAGAATAGGTGACTATAAGTAAACTTTTCTTGCC
AATGAACAGCTTTTTTTTTCAGTTTCTCAAGGCAGACAATCAATTATAATTTGTTTTAACAAAAA
ATGTAAACAAAATTCAACTAAAAATTAATTACAAGATTATAAAACTATTTAAAGCGAGTAAAAAA
GCTTTCAAAGGAATGGGTGACTATAAATACACTTTTCTAGCCAATGAATAGCTTTTTGTTCACGT
TTCTCAAAGTAAACAATCAATTATAACCTGTTTTAACTAAAAATATAAAACAATTCAACTTAAAA
TCAATTATGAGAATACAA
Found at i:1255 original size:171 final size:169
Alignment explanation
Indices: 969--1972 Score: 753
Period size: 171 Copynumber: 5.9 Consensus size: 169
959 ACCAAAAACG
** * * *
969 AGATTATAAAA-CTATTTAAAGCGAGTAATAACACTTTCGAAGGCAT-AGGTGACTATAAATGGA
1 AGATTATAAAATC-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGA-GTGACTATAAATAGA
* * * * * * *
1032 CTTTTCTAGTTAATGTATAGTTTTTTCTTCACGTTTCTTAAAGA-AGACATTCAATTATAACCTG
64 CTTTTCTTGCTAATGAAT-GCTTTTTCTTCA-ATTT-TTCAAGACAAACATTCAATTATAACCTG
* * * * *
1096 TTTTAACCAAATATATAAAAAAATTTAACTTAAAATGAATTTTA
126 TTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATA
** * * *
1140 AGATTATAAAATCATTTAAAATGAGTAATAAAGCTTTTAAAGGAATGAGTGACTATAAATATACT
1 AGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACT
* * ** *
1205 TTT-TCTGCTAATAAATGCCTGTTTCTT-AATGTCTTTTGAGACAAACATTCAATTAT-AGCTAG
66 TTTCT-TGCTAATGAATG-CTTTTTCTTCAAT-T-TTTCAAGACAAACATTCAATTATAACCT-G
* * * * * *
1267 TTTTAACCAAAAAGGTCAAAAAACTCAACTCAAACTCAATTATG
126 TTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATA
* * * *
1311 ATATTACT-AAATCATTTAAAGCGAGGAATATGGCTTTTCG-AGGAAT-AGGTGGCTATAAATAG
1 AGATTA-TAAAATCATTTAAAGCGAGTAATAAGGCTTTT-GAAGGAATGA-GTGACTATAAATAG
* * * **
1373 ACTTTTCTTTCTAATGAATGACTTTTTCTTCACATTTTTCAAGGCAGACATTCAATTATAATTTG
63 ACTTTTCTTGCTAATGAATG-CTTTTTCTTCA-ATTTTTCAAGACAAACATTCAATTATAACCTG
** * *
1438 TTTTAATTAAAAATGTAAAAAAATTCAACTTCAAATCAATTACA
126 TTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATA
* * * * * * * * *
1482 TGATTATAAAACCATTTAAAGTGAGTAATAACGCCTTCGAAGGCATGGGTGACTATAAATGGACT
1 AGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACT
* * *
1547 TTTCTAG-TCAATGAATGCTTTTTCTTCACTTTTCCTCAAGA-AGAA-ATTCAATTATAACCTAT
66 TTTCTTGCT-AATGAATGCTTTTTCTTCAATTTT--TCAAGACA-AACATTCAATTATAACCTGT
* *
1609 TTTAACCAAAAATGTTAAAAAAA---AA-TTAAAATGAATTATG
127 TTTAACCAAAAATG-TAAAAAAATTCAACTTAAAATCAATTATA
*
1649 AGATCATAAAA-CTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGA-
1 AGATTATAAAATC-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGAC
* * * * *
1712 TGTTTCTTGCCAATGAATG-TCTTTTCTTAATATTTTTTGAA-ACAGACATTCAATTAT-ACTTG
65 T-TTTCTTGCTAATGAATGCT-TTTTCTTCA-A-TTTTTCAAGACAAACATTCAATTATAACCTG
** ** * * *
1774 TTTTAATGAAAAACATCAAAAAATTCAA-TTCAAACTCAATTATG
126 TTTTAACCAAAAATGTAAAAAAATTCAACTT-AAAATCAATTATA
* * * * * * *
1818 AGATTA-AAAACCATTTAAAGCAAGGAATATGCCTTTTCG-AGGAATGGGTGGCTATAAATAGAC
1 AGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTT-GAAGGAATGAGTGACTATAAATAGAC
* *** * * **
1881 TTTTCTT-TTCAATGAATGACTTTTTCTTCTCGTTTTCTAAGGCAGACATTCAATTATAATTTGT
65 TTTTCTTGCT-AATGAATG-CTTTTTCTTCAATTTTTC-AAGACAAACATTCAATTATAACCTGT
* *
1945 TTTAACTAAAAATGTAAAAACATTCAAC
127 TTTAACCAAAAATGTAAAAAAATTCAAC
1973 NNNNNNNNNN
Statistics
Matches: 655, Mismatches: 133, Indels: 90
0.75 0.15 0.10
Matches are distributed among these distances:
165 7 0.01
166 19 0.03
167 103 0.16
168 68 0.10
169 50 0.08
170 81 0.12
171 317 0.48
172 8 0.01
173 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (169 bp):
AGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACT
TTTCTTGCTAATGAATGCTTTTTCTTCAATTTTTCAAGACAAACATTCAATTATAACCTGTTTTA
ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATA
Found at i:1259 original size:313 final size:313
Alignment explanation
Indices: 656--1279 Score: 727
Period size: 313 Copynumber: 2.0 Consensus size: 313
646 ATCTATTACA
* * * * *
656 AGATTGTAAAACTATTTAAAGCGAGTAAAAAAGCTTTTAAAGGTATGGGTGACTATCAATGGACT
1 AGATTATAAAACTATTTAAAGCGAGTAAAAAAGCTTTCAAAGGCATAGGTGACTATAAATGGACT
* * **
721 TTTCTAGCCAATGAATAGCTTTTTGTTCACGTTTCTCAAAGTAGACAATCAATTATAATTTGTTT
66 TTTCTAGCCAATGAATAGCTTTTTCTTCACGTTTCTCAAAGAAGACAATCAATTATAACCTGTTT
* * * * *
786 TAACTAAAAATGTAAAACAATTCAACTTAAAATCAATTTTGAGAATACAAAACCATTTAAAGCGA
131 TAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTTTAAGAATACAAAACCATTTAAAACGA
* * * * ** *
851 GTAATAAGGCTGTTGAAAGAATGGTTGACTCTAAGTAGACTTTTCTTGCCAATGAATGGTTTTTT
196 GTAATAAAGCTGTTGAAAGAATGGTTGACTATAAATAGACTTTTCTTGCCAATAAATGCCTGTTT
* * * * * * *
916 CTTCATTTTTTCTTAGGCACACAATCAATTATAATTTGATTTAACCAAAAACG
261 CTTAATTCTTTCTGAGACAAACAATCAATTATAACTAGATTTAACCAAAAACG
* *
969 AGATTATAAAACTATTTAAAGCGAGTAATAACA-CTTTCGAAGGCATAGGTGACTATAAATGGAC
1 AGATTATAAAACTATTTAAAGCGAGTAA-AAAAGCTTTCAAAGGCATAGGTGACTATAAATGGAC
** * * * *
1033 TTTTCTAGTTAATGTATAGTTTTTTCTTCACGTTTCTTAAAGAAGACATTCAATTATAACCTGTT
65 TTTTCTAGCCAATGAATAGCTTTTTCTTCACGTTTCTCAAAGAAGACAATCAATTATAACCTGTT
* * * * * * *
1098 TTAACCAAATATATAAAAAAATTTAACTTAAAATGAATTTTAAGATTATAAAATCATTTAAAATG
130 TTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTTTAAGAATACAAAACCATTTAAAACG
* * *
1163 AGTAATAAAGCT-TTTAAAGGAATGAG-TGACTATAAATATACTTTT-TCTGCTAATAAATGCCT
195 AGTAATAAAGCTGTTGAAA-GAATG-GTTGACTATAAATAGACTTTTCT-TGCCAATAAATGCCT
* * *
1225 GTTTCTTAATGTCTTT-TGAGACAAACATTCAATTATAGCTAGTTTTAACCAAAAA
257 GTTTCTTAAT-TCTTTCTGAGACAAACAATCAATTATAACTAGATTTAACCAAAAA
1280 GGTCAAAAAA
Statistics
Matches: 257, Mismatches: 49, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
312 6 0.02
313 243 0.95
314 8 0.03
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (313 bp):
AGATTATAAAACTATTTAAAGCGAGTAAAAAAGCTTTCAAAGGCATAGGTGACTATAAATGGACT
TTTCTAGCCAATGAATAGCTTTTTCTTCACGTTTCTCAAAGAAGACAATCAATTATAACCTGTTT
TAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTTTAAGAATACAAAACCATTTAAAACGA
GTAATAAAGCTGTTGAAAGAATGGTTGACTATAAATAGACTTTTCTTGCCAATAAATGCCTGTTT
CTTAATTCTTTCTGAGACAAACAATCAATTATAACTAGATTTAACCAAAAACG
Found at i:1929 original size:506 final size:511
Alignment explanation
Indices: 970--1972 Score: 1441
Period size: 506 Copynumber: 2.0 Consensus size: 511
960 CCAAAAACGA
* *
970 GATTATAAAACTATTTAAAGCGAGTAATAACACTTTCGAAGGCATAGGTGACTATAAATGGACTT
1 GATTATAAAACCATTTAAAGCGAGTAATAACACCTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * * *
1035 TTCTAGTTAATGTATAGTTTTTTCTTCACGTTTCTTAAAGAAGACATTCAATTATAACCTGTTTT
66 TTCTAGTCAATGAATAGCTTTTTCTTCACGTTTCCTAAAGAAGAAATTCAATTATAACCTATTTT
* * * *
1100 AACCAAATATATAAAAAAATTTAACTTAAAATGAATTTTAAGATTATAAAATCATTTAAAATGAG
131 AACCAAAAATATAAAAAAA--TAACTTAAAATGAATTATAAGATCATAAAATCATTTAAAACGAG
* * *
1165 TAATAAAGCTTTTAAAGGAATGAGTGACTATAAATATACTTTTTCTGCTAATAAATGCCTGTTTC
194 TAATAAAGCTTTTAAAGGAATGAGTGACTATAAATAGACTGTTTCTGCCAATAAATGCCTGTTTC
* * **
1230 TTAATGTCTTTTGAGACAAACATTCAATTATAGCTAGTTTTAACCAAAAAGGTCAAAAAACTCAA
259 TTAATATCTTTTGAAACAAACATTCAATTATAGCTAGTTTTAACCAAAAACATCAAAAAACTCAA
* * * * *
1295 CTCAAACTCAATTATGATATTACTAAATCATTTAAAGCGAGGAATATGGCTTTTCGAGGAATAGG
324 CTCAAACTCAATTATGAGATTACAAAACCATTTAAAGCAAGGAATATGCCTTTTCGAGGAATAGG
1360 TGGCTATAAATAGACTTTTCTTTCTAATGAATGACTTTTTCTTCACATTTTTCAAGGCAGACATT
389 TGGCTATAAATAGACTTTTCTTTCTAATGAATGACTTTTTCTTCACATTTTTCAAGGCAGACATT
*
1425 CAATTATAATTTGTTTTAATTAAAAATGTAAAAAAATTCAACTTCAAATCAATTACAT
454 CAATTATAATTTGTTTTAACTAAAAATGTAAAAAAATTCAACTTCAAATCAATTACAT
* * *
1483 GATTATAAAACCATTTAAAGTGAGTAATAACGCCTTCGAAGGCATGGGTGACTATAAATGGACTT
1 GATTATAAAACCATTTAAAGCGAGTAATAACACCTTCGAAGGCATAGGTGACTATAAATGGACTT
* *
1548 TTCTAGTCAATGAAT-GCTTTTTCTTCACTTTTCCTCAAGAAGAAATTCAATTATAACCTATTTT
66 TTCTAGTCAATGAATAGCTTTTTCTTCACGTTTCCTAAAGAAGAAATTCAATTATAACCTATTTT
* * *
1612 AACCAAAAATGTTAAAAAAA-AA-TTAAAATGAATTATGAGATCATAAAA-CTATTTAAAGCGAG
131 AACCAAAAAT-ATAAAAAAATAACTTAAAATGAATTATAAGATCATAAAATC-ATTTAAAACGAG
* * * *
1674 TAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGA-TGTTTCTTGCCAATGAATGTCT-TTT
194 TAATAAAGCTTTTAAAGGAATGAGTGACTATAAATAGACTGTTTC-TGCCAATAAATGCCTGTTT
* * * ** *
1737 CTTAATATTTTTTGAAACAGACATTCAATTATA-CTTGTTTTAATGAAAAACATCAAAAAATTCA
258 CTTAATATCTTTTGAAACAAACATTCAATTATAGCTAGTTTTAACCAAAAACATCAAAAAACTCA
* *
1801 ATTCAAACTCAATTATGAGATTA-AAAACCATTTAAAGCAAGGAATATGCCTTTTCGAGGAATGG
323 ACTCAAACTCAATTATGAGATTACAAAACCATTTAAAGCAAGGAATATGCCTTTTCGAGGAATAG
* *
1865 GTGGCTATAAATAGACTTTTCTTT-TCAATGAATGACTTTTTCTTCTC-GTTTTCTAAGGCAGAC
388 GTGGCTATAAATAGACTTTTCTTTCT-AATGAATGACTTTTTCTTCACATTTTTC-AAGGCAGAC
*
1928 ATTCAATTATAATTTGTTTTAACTAAAAATGTAAAAACATTCAAC
451 ATTCAATTATAATTTGTTTTAACTAAAAATGTAAAAAAATTCAAC
1973 NNNNNNNNNN
Statistics
Matches: 437, Mismatches: 48, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
505 6 0.01
506 132 0.30
507 46 0.11
508 38 0.09
509 80 0.18
510 2 0.00
512 52 0.12
513 81 0.19
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (511 bp):
GATTATAAAACCATTTAAAGCGAGTAATAACACCTTCGAAGGCATAGGTGACTATAAATGGACTT
TTCTAGTCAATGAATAGCTTTTTCTTCACGTTTCCTAAAGAAGAAATTCAATTATAACCTATTTT
AACCAAAAATATAAAAAAATAACTTAAAATGAATTATAAGATCATAAAATCATTTAAAACGAGTA
ATAAAGCTTTTAAAGGAATGAGTGACTATAAATAGACTGTTTCTGCCAATAAATGCCTGTTTCTT
AATATCTTTTGAAACAAACATTCAATTATAGCTAGTTTTAACCAAAAACATCAAAAAACTCAACT
CAAACTCAATTATGAGATTACAAAACCATTTAAAGCAAGGAATATGCCTTTTCGAGGAATAGGTG
GCTATAAATAGACTTTTCTTTCTAATGAATGACTTTTTCTTCACATTTTTCAAGGCAGACATTCA
ATTATAATTTGTTTTAACTAAAAATGTAAAAAAATTCAACTTCAAATCAATTACAT
Done.