genome.fa.s41.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397294.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_477.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  347590

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550--584	13	2.6	14	86	9	54	5	25	2	65	1.28
3618--3677	25	2.4	25	85	0	75	26	35	15	23	1.94
6365--6435	29	2.7	26	71	14	63	22	19	18	39	1.92
7645--7688	20	2.3	19	92	7	72	52	2	2	43	1.26
25004--25041	19	2.1	19	85	5	51	28	10	5	55	1.56
33587--33748	76	2.1	75	83	11	215	39	5	11	43	1.65
35692--35904	74	2.9	74	86	3	277	42	18	16	22	1.89
43178--43212	15	2.2	16	90	5	54	14	5	17	62	1.49
46206--46231	13	2.0	13	100	0	52	46	15	0	38	1.46
50444--50632	72	2.6	72	85	4	256	29	19	12	39	1.88
65656--65826	36	4.8	37	71	9	124	30	20	28	21	1.98
65655--65847	105	1.8	105	84	0	260	31	18	29	21	1.97
67208--68214	505	2.0	505	85	3	1355	38	16	11	32	1.86
69328--69462	29	4.6	29	75	9	148	39	11	10	38	1.76
81858--81973	62	1.9	61	80	8	137	14	13	22	49	1.79
107645--107681	16	2.3	16	95	0	65	2	27	0	70	1.01
107854--107884	10	2.9	11	90	9	55	0	16	45	38	1.47
108104--108167	32	2.0	32	93	0	110	18	12	59	9	1.59
108125--108208	30	2.9	28	76	15	89	16	11	61	9	1.55
108336--108377	22	1.9	22	90	0	66	16	21	50	11	1.77
108336--108383	22	2.2	22	84	0	60	16	22	50	10	1.76
113484--113563	33	2.4	34	78	2	90	26	13	23	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120021--120060	17	2.4	17	87	8	55	37	30	32	0	1.58
136526--136592	33	2.0	33	100	0	134	29	11	11	46	1.77
137041--137075	17	1.9	19	88	11	56	48	0	2	48	1.16
152276--152306	14	2.2	14	94	0	53	0	6	38	54	1.26
157752--157884	60	2.2	60	89	0	194	24	18	32	24	1.97
157689--158450	31	25.0	31	68	8	193	24	14	31	27	1.94
157754--157884	29	4.4	29	78	5	118	25	17	32	25	1.97
157966--158452	62	8.0	62	71	5	247	24	13	32	29	1.94
157955--158235	93	3.0	93	75	1	278	24	13	32	30	1.93
158128--158459	121	2.7	122	80	1	353	24	14	33	28	1.94
158213--158405	90	2.1	89	80	4	208	25	14	32	26	1.95
162321--162864	31	17.3	31	82	3	606	36	18	15	29	1.92
163520--163904	47	8.3	47	80	4	361	24	30	16	27	1.97
163520--163903	92	4.1	92	79	6	346	24	30	16	27	1.97
163551--163888	139	2.4	139	80	7	373	23	30	17	27	1.97
165752--165810	30	2.0	30	86	0	82	52	8	15	23	1.70
168668--168719	2	26.0	2	100	0	104	50	0	0	50	1.00
169197--169230	18	1.9	17	88	5	50	52	0	0	47	1.00
169235--169307	26	2.8	24	80	12	74	53	0	2	43	1.15
169246--169303	27	2.1	27	84	12	75	50	0	3	46	1.18
169256--169306	25	2.0	24	85	14	68	49	0	3	47	1.20
170094--170164	11	6.5	11	73	9	56	76	7	1	15	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171054--171087	16	2.1	16	88	0	50	17	2	0	79	0.86
171598--171653	29	1.9	29	96	0	103	42	16	8	32	1.79
185051--185103	23	2.3	23	93	0	88	50	15	11	22	1.75
185051--185115	23	2.8	23	86	4	69	55	15	9	20	1.67
191453--191500	21	2.2	21	88	3	69	35	12	16	35	1.87
191517--191729	112	1.9	111	79	5	241	30	19	16	33	1.94
191752--191970	62	3.5	63	84	4	275	27	18	21	32	1.96
200017--200582	283	2.0	282	88	1	830	36	22	15	25	1.93
206976--207032	25	2.3	25	87	0	87	29	19	10	40	1.85
209538--209617	21	3.6	21	71	12	61	33	6	18	41	1.76
216909--216948	21	2.0	20	90	5	62	40	15	7	37	1.75
227041--227081	21	2.0	21	85	0	55	36	14	9	39	1.79
228229--228391	80	2.1	78	81	9	188	24	21	19	34	1.96
228087--228706	313	2.0	313	86	3	863	25	16	20	37	1.93
228645--228809	69	2.4	69	86	4	217	27	19	21	31	1.97
232116--232246	29	4.5	29	79	6	131	42	9	10	36	1.73
232116--232239	59	2.1	58	82	2	142	41	10	9	37	1.72
233524--233597	35	2.1	35	85	5	96	37	8	10	43	1.69
234057--234083	6	4.5	6	100	0	54	62	0	0	37	0.95
238752--238899	66	2.2	67	80	4	165	37	8	18	35	1.82
239208--239241	16	2.1	16	100	0	68	35	5	26	32	1.81
244551--244600	20	2.5	20	83	0	73	34	26	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249583--249607	2	12.5	2	100	0	50	52	0	48	0	1.00
271677--271730	28	1.9	28	88	7	83	31	14	5	48	1.67
271982--272029	20	2.3	21	76	23	57	60	0	2	37	1.09
274855--274879	2	12.5	2	100	0	50	0	48	0	52	1.00
276699--277206	265	1.9	265	87	1	741	29	16	18	36	1.93
290570--290609	21	1.9	21	89	0	62	2	20	0	77	0.88
290723--290761	9	4.2	9	83	6	51	82	0	15	2	0.79
301683--301730	6	7.7	6	77	9	51	75	0	2	22	0.91
301664--301735	32	2.2	32	92	2	117	68	0	1	30	0.99
302460--302527	34	2.0	34	94	0	118	27	27	22	22	1.99
303613--304057	223	2.0	225	80	3	504	33	20	13	32	1.92
304087--304300	67	3.2	67	85	2	277	27	23	10	38	1.88
311697--311860	77	2.1	77	88	0	238	38	9	14	37	1.78
312098--312131	16	2.1	15	89	10	50	52	0	8	38	1.33
315746--315785	20	2.0	20	100	0	80	50	10	15	25	1.74
318668--318703	19	1.9	19	88	5	56	36	22	5	36	1.78
319064--319117	20	2.7	20	88	5	74	31	16	12	38	1.87
323054--323194	35	4.0	35	79	4	140	43	10	7	38	1.68
323073--323222	35	4.3	34	80	9	153	45	11	6	36	1.66
324099--324133	16	2.1	17	94	5	63	22	20	20	37	1.95
327894--327948	25	2.2	25	86	0	74	23	30	18	27	1.97
331495--331519	7	3.6	7	100	0	50	12	0	40	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344321--344369	23	2.1	23	85	7	64	40	26	10	22	1.86

Tables:   1

The End!