Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401392.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4521.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2354
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.18

Warning! 1220 characters in sequence are not A, C, G, or T


Found at i:69 original size:15 final size:16

Alignment explanation


    Indices: 49--78  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

         39 TTTAGCAAAA

                            
         49 AATGTAAAA-CAATTC
          1 AATGTAAAATCAATTC

                           
         64 AATGTAAAATCAATT
          1 AATGTAAAATCAATT

         79 ATGAGATCAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.53, C:0.10, G:0.07, T:0.30


Consensus pattern (16 bp):   
AATGTAAAATCAATTC
Done.