Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401411.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4539.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2405
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31


Found at i:1478 original size:18 final size:16

Alignment explanation


    Indices: 1429--1494  Score: 51
    Period size: 18  Copynumber: 3.8  Consensus size: 16

       1419 TTTTACTTTC

                           * 
       1429 TTTCTTCTTTTTTCCTT
          1 TTTCTTCTTTTTT-CAT

               *  *           
       1446 TTTTTTTTTACTTTTCAT
          1 TTTCTTCTT--TTTTCAT

                            * 
       1464 TTTCTCTCATTTTTTCTT
          1 TTTCT-TC-TTTTTTCAT

                         
       1482 TTTCTTCTTTTTT
          1 TTTCTTCTTTTTT

       1495 TTTTCCGGAA


Statistics
Matches: 39,  Mismatches: 6, Indels: 9
        0.72            0.11        0.17

Matches are distributed among these distances:
  16    6  0.15
  17    9  0.23
  18   17  0.44
  19    5  0.13
  20    2  0.05

ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77


Consensus pattern (16 bp):   
TTTCTTCTTTTTTCAT
Done.