Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401415.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4542.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.07, C:0.05, G:0.02, T:0.12

Warning! 859 characters in sequence are not A, C, G, or T


Found at i:36 original size:3 final size:3

Alignment explanation


    Indices: 21--59  Score: 53
    Period size: 3  Copynumber: 13.3  Consensus size: 3

         11 TATTTCACTT

                      *               *                          
         21 TTA TTA TTT TTA TTA TT- TTG TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T

         60 CATGCAAATC


Statistics
Matches: 32,  Mismatches: 3, Indels: 2
        0.86            0.08        0.05

Matches are distributed among these distances:
   2    2  0.06
   3   30  0.94

ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72


Consensus pattern (3 bp):   
TTA

Found at i:44 original size:17 final size:17

Alignment explanation


    Indices: 19--59  Score: 55
    Period size: 17  Copynumber: 2.4  Consensus size: 17

          9 TTTATTTCAC

                      *      
         19 TTTTATTATTTTTATTA
          1 TTTTATTATTATTATTA

                *            
         36 TTTTGTTATTATTATTA
          1 TTTTATTATTATTATTA

                   
         53 TTATTAT
          1 TT-TTAT

         60 CATGCAAATC


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  17   17  0.85
  18    3  0.15

ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73


Consensus pattern (17 bp):   
TTTTATTATTATTATTA

Done.