Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401423.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4550.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1367
ACGTcount: A:0.20, C:0.07, G:0.08, T:0.20

Warning! 610 characters in sequence are not A, C, G, or T


Found at i:1040 original size:171 final size:170

Alignment explanation


    Indices: 742--1362  Score: 702
    Period size: 171  Copynumber: 3.6  Consensus size: 170

        732 NNNNNNNNTT

                        *                                       * *          
        742 GTCTGTTTTAATAAAAAATATAAAACAATTCAACTTAAAATCAATTATTAGAATGTAAAACCATT
          1 GTCTGTTTTAATCAAAAATATAAAACAATTCAACTTAAAATCAATTATTAGATTATAAAACCATT

                     *                      *                                
        807 TAAAGGC-AATAATAAGGCTTTTGAAGGAATGAGAGGCTATAAAT-AGA-TTTTTCTTGCCAATG
         66 TAAA-GCTAGTAATAAGGCTTTTGAAGGAATGGGAGGCTATAAATGA-ACTTTTT-TTGCCAATG

                                      *                *
        869 AATGCTTTTATCTTCACATTTCTTGAAATAGACATTCAATTATT
        128 AATGCTTTT-TCTTCACATTTCTTGAGATAGACATTCAATTATA

                *         *                                    *          *  
        913 GTCTTTTTTAATCATAAATATAAAACAATTCAACTTAAAATCAATTATTAGCTTATAAAACCCTT
          1 GTCTGTTTTAATCAAAAATATAAAACAATTCAACTTAAAATCAATTATTAGATTATAAAACCATT

                    *       *           *            *             *         
        978 TAAAGCTATTAATAAGCCTTTTGAAGGATTGGGAGGCTATATATGAACTTTTTTTACCAATGAAT
         66 TAAAGCTAGTAATAAGGCTTTTGAAGGAATGGGAGGCTATAAATGAACTTTTTTTGCCAATGAAT

                          *    *  * * *              
       1043 GCTTTTTCCTTCACGTTTCATGTGTTCGACATTCAATTATA
        131 GCTTTTT-CTTCACATTTCTTGAGATAGACATTCAATTATA

                        *      *          *                  * *    *     *  
       1084 GTCTGTTTTAATGAAAAATGTAAAGA-AATGCAACTTAAAATCAATTATGAAATTAGAAAACTAT
          1 GTCTGTTTTAATCAAAAATATAAA-ACAATTCAACTTAAAATCAATTATTAGATTATAAAACCAT

                *          *                   *  *         *      *   *     
       1148 TTAACGCGT-GTAATTAGGCTTTTGAAGGAATAGGTA-ACTATAAATGGACTTTTCTTGTCAATG
         65 TTAAAGC-TAGTAATAAGGCTTTTGAAGGAAT-GGGAGGCTATAAATGAACTTTTTTTGCCAATG

                                   *        *           
       1211 AATGCTCTTTTCTTCACATTTCTCGAGATAGATATTCAATTATA
        128 AATGCT-TTTTCTTCACATTTCTTGAGATAGACATTCAATTATA

                               *     *         *                       *     
       1255 GTCTG-TTTAATCAAAAATGTAAAAAAATTCAACTGAAAATCAATTATTAGATTATAAAGCCATT
          1 GTCTGTTTTAATCAAAAATATAAAACAATTCAACTTAAAATCAATTATTAGATTATAAAACCATT

                                                    *     
       1319 TAAAG-TGAGTAATAAGG-TTTTCGAAGGAATGGGAGGCTGTAAAT
         66 TAAAGCT-AGTAATAAGGCTTTT-GAAGGAATGGGAGGCTATAAAT

       1363 AGACT


Statistics
Matches: 374,  Mismatches: 63, Indels: 27
        0.81            0.14        0.06

Matches are distributed among these distances:
 168    1  0.00
 169    8  0.02
 170   79  0.21
 171  271  0.72
 172   15  0.04

ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36


Consensus pattern (170 bp):   
GTCTGTTTTAATCAAAAATATAAAACAATTCAACTTAAAATCAATTATTAGATTATAAAACCATT
TAAAGCTAGTAATAAGGCTTTTGAAGGAATGGGAGGCTATAAATGAACTTTTTTTGCCAATGAAT
GCTTTTTCTTCACATTTCTTGAGATAGACATTCAATTATA

Done.