Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401429.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4557.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2154
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.36

Warning! 107 characters in sequence are not A, C, G, or T


Found at i:290 original size:36 final size:36

Alignment explanation


    Indices: 240--315  Score: 125
    Period size: 36  Copynumber: 2.1  Consensus size: 36

        230 NNNNNNNNAA

                     *                          
        240 TTGTTTAATTAAGTTATTGGGCCTAATGGATTAAAT
          1 TTGTTTAATCAAGTTATTGGGCCTAATGGATTAAAT

                                 *     *        
        276 TTGTTTAATCAAGTTATTGGGTCTAATTGATTAAAT
          1 TTGTTTAATCAAGTTATTGGGCCTAATGGATTAAAT

                
        312 TTGT
          1 TTGT

        316 NNNNNNNNNN


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.29, C:0.05, G:0.18, T:0.47


Consensus pattern (36 bp):   
TTGTTTAATCAAGTTATTGGGCCTAATGGATTAAAT

Found at i:383 original size:35 final size:35

Alignment explanation


    Indices: 352--418  Score: 100
    Period size: 35  Copynumber: 1.9  Consensus size: 35

        342 TCAAATTGTT

                         *                      
        352 TAATTAAGTTATTGGGCATCAA-TGATTAAATTAAA
          1 TAATTAAGTTATTAGGCAT-AATTGATTAAATTAAA

                             *              
        387 TAATTAAGTTATTAGGCCTAATTGATTAAATT
          1 TAATTAAGTTATTAGGCATAATTGATTAAATT

        419 NNNNNNNNNN


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  34    2  0.07
  35   27  0.93

ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40


Consensus pattern (35 bp):   
TAATTAAGTTATTAGGCATAATTGATTAAATTAAA
Done.