Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397671.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4685.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 959

Length: 1599
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36


Found at i:460 original size:2 final size:2

Alignment explanation


    Indices: 453--485  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        443 TAGTGTTCCT

                                                             
        453 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        486 TAAAAAAATA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:866 original size:19 final size:21

Alignment explanation


    Indices: 844--882  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        834 ATCGTTTCAG

                                 
        844 TTAAG-AA-GATGGTAATCAA
          1 TTAAGAAACGATGGTAATCAA

                                
        863 TTAAGAAACGATGGTAATCA
          1 TTAAGAAACGATGGTAATCA

        883 GTTAGGAGTG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19    5  0.28
  20    2  0.11
  21   11  0.61

ACGTcount: A:0.46, C:0.08, G:0.21, T:0.26


Consensus pattern (21 bp):   
TTAAGAAACGATGGTAATCAA

Done.