Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401442.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_457.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2275
ACGTcount: A:0.28, C:0.11, G:0.10, T:0.31

Warning! 458 characters in sequence are not A, C, G, or T


Found at i:1855 original size:170 final size:170

Alignment explanation


    Indices: 1545--1894  Score: 411
    Period size: 170  Copynumber: 2.1  Consensus size: 170

       1535 NNNNNNNNNT

                                                             **  *   *       
       1545 ATAGTCACCCATGCCTTTGAAAGCCTTATTACTCGCTTTAAAAAGTTTTTTAAGCTCGTAATTAG
          1 ATAGTCACCCATGCCTTTGAAAGCCTTATTACTCGCTTTAAAAAGTTTTAAAACCTCATAATTAG

                                                    *                        
       1610 TTTTAAGTTAAACTTTTTATATTTATTATTAAAACAGATTGTAATTGAATGTTTGCCTTAAAAAA
         66 TTTTAAGTTAAACTTTTTATATTTATTATTAAAACAGATTATAATTGAATGTTTGCCTTAAAAAA

                       *       *                    
       1675 CGTAAAGAAAATGATATCCGTTGGAAAGAAAAGTCCATTG
        131 CGTAAAGAAAAAGATATCCATTGGAAAGAAAAGTCCATTG

                                *   *                   *             *      
       1715 ATAGTCACCCATG-CTTTCGGAAGGCTTATTACTCGCTTT-AAATGATTTTAAAACCTTATAATT
          1 ATAGTCACCCATGCCTTT-GAAAGCCTTATTACTCGCTTTAAAAAG-TTTTAAAACCTCATAA-T

                     *  *  *           *       *   *                  **     
       1778 TA-TTTTAATTTTAATTTTTTATATTTTTTATTAACACATATTATAATT-AATTGTTTTTCTTAA
         63 TAGTTTTAAGTTAAACTTTTTATATTTATTATTAAAACAGATTATAATTGAA-TGTTTGCCTTAA

            *      *                    *    *     *   *
       1841 GAAACGTGAAGAAAAAGATATCCATTGGTAAGAGAAGTCTATTT
        127 AAAACGTAAAGAAAAAGATATCCATTGGAAAGAAAAGTCCATTG

                      
       1885 ATAGTCACCC
          1 ATAGTCACCC

       1895 NNNNNNNNNN


Statistics
Matches: 151,  Mismatches: 25, Indels: 8
        0.82            0.14        0.04

Matches are distributed among these distances:
 169   10  0.07
 170  138  0.91
 171    3  0.02

ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40


Consensus pattern (170 bp):   
ATAGTCACCCATGCCTTTGAAAGCCTTATTACTCGCTTTAAAAAGTTTTAAAACCTCATAATTAG
TTTTAAGTTAAACTTTTTATATTTATTATTAAAACAGATTATAATTGAATGTTTGCCTTAAAAAA
CGTAAAGAAAAAGATATCCATTGGAAAGAAAAGTCCATTG
Done.