Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401443.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4570.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1278
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.29

Warning! 295 characters in sequence are not A, C, G, or T


Found at i:1067 original size:171 final size:159

Alignment explanation


    Indices: 964--1278  Score: 176
    Period size: 169  Copynumber: 1.9  Consensus size: 159

        954 NNNNNNNNNN

                    *   *                *                 *          *   *  
        964 TTTAAAGCGAGTCATAAGGCTTTCAAAGGTATGGGTGAGTATAAATGGA-TATTTCTTGCTAGTG
          1 TTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTGAGTATAAATGAACT-TTTCTTACTAATG

                                      *       *              *               
       1028 GATATCTTTTTCTTCA-AGTTT-CTCGAGACAAATATTCAATTATAATTTTTTTAATAAAAATAT
         65 GATATCTTTTTCTTCACA-TTTCCT-AAGACAAACATTCAATTATAATTGTTTTAATAAAAATAT

             *       *         *                       
       1091 ATAAAAATTTAAATTAAAATCAATTATGAGGNNNNNNNNNNA-
        128 AAAAAAATTCAAATTAAAACCAATTATGA-G----------AT

                    *               *       **    *    *            *   *    
       1133 TTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAAGTGACTATACAT-AGACTTTTCCTACAAATG
          1 TTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTGAGTATAAATGA-ACTTTTCTTACTAATG

            *             *  *          *     *   *                          
       1197 TATATCTTTTTCTTTACGTTT-CT-AGATATAGATATTTAATTATAATATGTTTTAATAAAAATA
         65 GATATCTTTTTCTTCACATTTCCTAAGACA-A-ACATTCAATTATAAT-TGTTTTAATAAAAATA

                      *        
       1260 TAAAAAAATTAAAATTAAA
        127 TAAAAAAATTCAAATTAAA


Statistics
Matches: 120,  Mismatches: 20, Indels: 11
        0.79            0.13        0.07

Matches are distributed among these distances:
 167    4  0.03
 168    1  0.01
 169   82  0.68
 170   33  0.28

ACGTcount: A:0.38, C:0.09, G:0.13, T:0.37


Consensus pattern (159 bp):   
TTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGGGTGAGTATAAATGAACTTTTCTTACTAATGG
ATATCTTTTTCTTCACATTTCCTAAGACAAACATTCAATTATAATTGTTTTAATAAAAATATAAA
AAAATTCAAATTAAAACCAATTATGAGAT
Done.