Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401444.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4571.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 985

Length: 1642
ACGTcount: A:0.20, C:0.08, G:0.07, T:0.21

Warning! 744 characters in sequence are not A, C, G, or T


Found at i:919 original size:172 final size:160

Alignment explanation


    Indices: 680--1015  Score: 327
    Period size: 172  Copynumber: 2.0  Consensus size: 160

        670 AGAAACAGGA

                                                          **    **           
        680 AGAAAAAGATATCTATTGGAAAGAAAAGTCCATTTATAGCCACCAATTCCTTTGAAAGCCTTATT
          1 AGAAAAAGATATCTATTGGAAAGAAAAGTCCATTTATAGCCACCAACACCTTCAAAAGCCTTATT

                                       *           *    *                    
        745 ACTCGCTTCAAATAAATTTCTAACTT-TATAATCGATTTTAACTTAT-ATTTGTTTTATATGTTT
         66 ACTCGCTTCAAATAAATTTCTAA-TTCGATAATCGATTTCAA--GATGATTT-TTTTATATGTTT

                             *                          
        808 TATTAAAACAAATTATAGTTGAATGTCTACCTNNNNNNNNNNTG
        127 TATTAAAACAAATTATAATTGAATGTCTACCT----------TG

                                *    *              *    *                   
        852 AGAAAAAGATA-CTCATTGGCAAGAGAAGTCCATTTATAGTCACCCACACCTTCAAAAGCCTTAT
          1 AGAAAAAGATATCT-ATTGGAAAGAAAAGTCCATTTATAGCCACCAACACCTTCAAAAGCCTTAT

                 **  *     **                *                        *      
        916 TACTCTTTTTAAATATTTTTCTAATTCGATAATTGATTTCAAGATGATTTTTTTATATTTTTTAT
         65 TACTCGCTTCAAATAAATTTCTAATTCGATAATCGATTTCAAGATGATTTTTTTATATGTTTTAT

                 * *                       
        981 TAAAATAGATTATAATTGAATGTCTACCTTG
        130 TAAAACAAATTATAATTGAATGTCTACCTTG

                
       1012 AGAA
          1 AGAA

       1016 NNNNNNNNNN


Statistics
Matches: 140,  Mismatches: 21, Indels: 18
        0.78            0.12        0.10

Matches are distributed among these distances:
 160    6  0.04
 170   42  0.30
 171    8  0.06
 172   84  0.60

ACGTcount: A:0.35, C:0.14, G:0.10, T:0.38


Consensus pattern (160 bp):   
AGAAAAAGATATCTATTGGAAAGAAAAGTCCATTTATAGCCACCAACACCTTCAAAAGCCTTATT
ACTCGCTTCAAATAAATTTCTAATTCGATAATCGATTTCAAGATGATTTTTTTATATGTTTTATT
AAAACAAATTATAATTGAATGTCTACCTTG
Done.