Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018401456.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4582.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9185
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Warning! 178 characters in sequence are not A, C, G, or T
Found at i:1090 original size:171 final size:170
Alignment explanation
Indices: 572--9185 Score: 5085
Period size: 171 Copynumber: 50.4 Consensus size: 170
562 TCAATTTTAA
* * * *
572 ATTATAAAACTATTTAAAGCGAGTAATAAAG-TTTTCAAAGGCATAAGTGACTATAAATGGACTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT-GAAGGCATAGGTGACTATAAATGGACTT
* * * * * * * *
636 TGCTTACCACTGAATAACTTTTTCTTCACGTTTCTTGAAGTAAACATTCAATTATAATATGTTTT
65 TTCTT-GCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTT
* * ***
701 AATAAAAAATAT-AAAAAATTCAACAGAAAATCAATTATGAG
129 AATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* ** * * * * * * *
742 ATTATAAAAACAACTAAAGCAAGTAATAGGGCTTTCGAAGGTAT-GAGTAAGTATAAATTGACTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAG-GTGACTATAAATGGACTT
** * ** * * **
806 TTCTCACCACTGAATGGCTTTTTCTTCATGTTT-CTCGAGGTAGCCATTTAATTATAATCTAATT
65 TTCT-TGCAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
*
870 TAACT-AAAAA--TAAAAAAAACTCAACTT-AAACTCAATTATAAG
128 TAA-TAAAAAATGTAAAAAAAA-TCAACTTCAAA-TCAATTATGAG
* * * * *
912 ATTATAAAACCATTTAAGGCGAATAATAAGGCTTTTGAAGGCACAAGTGACTATAAAAGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * * *
977 TCTTGCAGATGAATAACTTTTTATGCATGTTTCCTGAGATAGACATTCAATTATGATATGTTTTC
66 TCTTGCA-ATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
1042 ATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
130 ATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * *
1083 GTTATAAAACTATTTAAAACGAGTAATAGGGCTTTTGAAGGCAT-GAGTGACTATAAATGGACTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAG-GTGACTATAAATGGACTT
* * * ** * * *
1147 TTCTTGTCAATGAATGACTTGTTCTTGACATTTCTTGAGGTAGATATTTAATTATAATCTGTTTT
65 TTCTTG-CAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTT
* * *
1212 CACT-ATAAATG-AAAAAAAATTCTAC-TCAAAGTCAATTATGAG
129 -AATAAAAAATGTAAAAAAAA-TCAACTTCAAA-TCAATTATGAG
* * ** * *
1254 ATGATAAAATCATTTAAAGATAGTAATAAGGCTTTTGAAGACATAGATGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGAC-TT
* * * ** ** * * * * * *
1319 TTCGTGGCAATGAATATCTTTTTCTTTACATTTCCCAAGATAGATATACAATTACAATCTATTTG
65 TTC-TTGCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTT
**
1384 AAT-AAAAATGTAAAAAACTTCAACTTCAAATCAATTATGAG
129 AATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * *
1425 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGCCATGGGTGACTATAAATGGATATT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGA-CTT
** * *
1490 TTC-TGCCAATGAATGGCTTTTTCTTCATGTTT-CTCAAGGTAGACATTTAATTATAATCTGTTT
65 TTCTTG-CAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
* * * *
1553 GGACT-AAAAAT-AAAAACAAAAT-AACTT-AAGTCAATTATGAG
128 -TAATAAAAAATGTAAAA-AAAATCAACTTCAAATCAATTATGAG
1594 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGAC-TT
** * * ** * * * * *
1659 TTCGAGGTAATGAATATCTTGGTCCTCATGTTT-CTGAAGATAAACATTCAATTAGAATCTATTT
65 TTC-TTGCAATGAATAACTTTTTCTTCATGTTTCCTG-AGGTAGACATTCAATTATAATCTGTTT
* *
1723 TAATAAAAAATGTAAAAAAATTTAACTTCAAATCAATTATGAG
128 TAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * *
1766 ATTATAAAGCCATTTAGAGCGAGTAATAAGGCTTTTGAAGGCATAGATGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * * * * *
1831 TTTTATCAATGAATATCTCTTTCTGCATGTTTCTTGAGGTAGACATTCAGTTATAATCTGTTTTG
66 TCTT-GCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
** * * * * * *
1896 ATAAAAAATACAAAAACAATTTAACATAAAATCAAGTACGAG
130 ATAAAAAATGTAAAAA-AAATCAACTTCAAATCAATTATGAG
* ** * * * * *
1938 ATTACAAAAATAATTGAAGCAAGTAATAAGGCTTTTGAAGGCAT-GGATGAGTATAAATGAACTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGG-TGACTATAAATGGACTT
* * * * *
2002 TTCTTATG-AATGAATAGCTTTTTTTTCATATTT-CTAGAGGTAGATATTCAATTATAGTCTGTT
65 TTC-T-TGCAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTT
** *
2065 TTAACCAAAAGTG-AAAAAAAATTCAACTT-AAAGTCAATTATGAG
127 TTAATAAAAAATGTAAAAAAAA-TCAACTTCAAA-TCAATTATGAG
* * ** * * *
2109 ATTATAAAACCATATAAAGCGAGTAATACA-GCTTTGGAAGGTGTGGGTGACTATAAGTGGA-GT
1 ATTATAAAACCATTTAAAGCGAGTAATA-AGGCTTTTGAAGGCATAGGTGACTATAAATGGACTT
** ** * * * * *
2172 TTCTTGCTAATGAATGCCTTGGTCTTCATGTTTCTTGAAGTAAACATTTAATTATAATATGTTTT
65 TTCTTGC-AATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTT
* * *
2237 AACAAAAAATGAAAAAACAAATTCAACTT-AACGTCAATTATGAG
129 AATAAAAAATGTAAAAA-AAA-TCAACTTCAA-ATCAATTATGAG
* * *
2281 ATTATAAAATCATTTAAAGCGAGTAATAAGACTTTTGAAGGCATAGGTGATTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * * ** * *
2346 TCTTACTAATAAAAAACTTTTTCTTTACGTTTTTTGAGGTAGACATTCAATTATAATATGTTTCA
66 TCTTGC-AATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
* * *
2411 ATAGAAAATATAAAAAAATTCAACTTCAAATCAATTATGAG
130 ATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * *
2452 ATTATAAAACCATTTAAAGCGTGTAATAAGGCTTTTGAAGGAATAGGTGATTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
** * ** *
2517 TCTAACCAATGAATATCTTTTT-TTGCACATTT-CTCAAGGTAGACATTCAATTATAATCTGTTT
66 TCT-TGCAATGAATAACTTTTTCTT-CATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
* * *
2580 TAATAAAAAATAT-AAAAAAGTCAACTTCAAAATCAATAATGAG
128 TAATAAAAAATGTAAAAAAAATCAACTTC-AAATCAATTATGAG
* * * * * * * *
2623 AATATAAAA--ATGATTAAAGCAAGTAAAAAGGCTTTCGAAGTCATGGGTGAGTATAAATGGGCT
1 ATTATAAAACCAT--TTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACT
* * * * * * *
2686 TTTTTTACCAATGAATAACTTTTTCTTTACGTTTTCTGAGGTACACATTCAATTACAATCTGTTT
64 TTTCTT-GCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTT
* ** *
2751 T-TTAAAAAATGT-AAAAACTTCAACTTCAAATCATTTATGAG
128 TAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
*****************************
2792 ATTATAAAACCATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 ATTATAAAACCATTTAAA------------------GCGAGTAATAAGGCTTTTGAAGGCATAGG
*****************************************************************
2857 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
48 TGACTATAAATGGACTTTTCTTGCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTC
************************** *** ** * * ** * *
2922 NNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAGTAA-AAAATGT-AAAAAAATT-TCAA
113 AATTATAATCTGTTTTAATAAAAAATGTAAAAAAAATCAACT-TCAAATCAATTATGAG
* * * * * * ** * ** * *
2978 ATT-TAAAATCAATTATGAG-AATCTAA-AA-ACAATTAAAGTAAGTA-ATAAGACTTTTAAA-G
1 ATTATAAAACCATTTA-AAGCGA-GTAATAAGGCTTTTGAAGGCA-TAGGT--GAC-TATAAATG
*** ** * * * ** ** * **** ** *
3037 G-CATAGGCGAG-TATAAATAGACTATTCTCACCAATGAATAGCTTTTTCTTCACGTTTCTCAAG
60 GAC-TTTTCTTGCAATGAATA-ACT-TTTTCTTC-ATG--TTTCCTGAGGTAGAC--AT-TCAA-
* * ** * **
3100 GTAGACATTCAATTATAATATGTTGTGACCAAAA---AAAAAAAAAAAACTT-AAAGTCAATTAT
115 TTATA-A-TCTGTTTTAATA-------A--AAAATGTAAAAAAAATCAACTTCAAA-TCAATTAT
3161 GAG
168 GAG
* * ** *
3164 ATTATAAAGCCATTTAAAGCCAGTAATAAGATTTTTGAAGGTATAGGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * ** * * * * * *
3229 TCTTGTCAATAAATATCTTTTTCTGCACATTT-CTCAAGGGAAACATTTAGTTATAAACTGTTTT
66 TCTTG-CAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTTT
* * * * * * *
3293 AACT-AAAAATATAAAACAAATTCAGCATAAAATCAAGTACGAG
129 AA-TAAAAAATGTAAAA-AAAATCAACTTCAAATCAATTATGAG
* ** * * *
3336 ATTACAAAAATAATTAAAGCAAGTAATAAGGCTTTTGAAGGTAT-GGTTGAGC-ATAAATGGACT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGG-TGA-CTATAAATGGACT
* ** * ** * * *
3399 ATTCTCACCCATGAATGGCTTTTTCTTCATGTTT-CTCAAG-ATGAACATTTAATTATAATCTGT
64 TTTCT-TGCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTA-G-ACATTCAATTATAATCTGT
*
3462 TTTAACT-AAAAATGGAAAAAAAATTCAACTT-AAAGTCAATTATGAG
126 TTTAA-TAAAAAATGTAAAAAAAA-TCAACTTCAAA-TCAATTATGAG
* *
3508 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCATAGGCGACTATAAATTGG-CTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAA-TGGACTT
* * * * * * * *
3572 TTCTTATCAAGGAATATCTCTTTCTTCATGTTT-GTCAATGTAGACATTCAGTTATAATCTGTTT
65 TTCTT-GCAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
3636 TAATAAAAAA--T--AAAAAA--AA--TC--A--AA-TATGAG
128 TAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * * * * * ***
3666 AATACAAAAACTAATTAAGGCAAGTAATAAGGCTTTCGAAGGCATGGGTCTGTATAAATGGACTT
1 ATTA-TAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTT
* ** * * * * *
3731 TTCTTACCAATGAATGGCTTTTTCTACATGTTTCTTGAGGTAGACGTTTAATTATAATTTGTTTT
65 TTCTT-GCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTT
** *
3796 AACCAAAAA--TAAAAAAAATTCAACTT-AAAGTCAATTATGAT
129 AATAAAAAATGTAAAAAAAA-TCAACTTCAAA-TCAATTATGAG
* * * * * *
3837 ATTATAAAACCAATTAAAGCGAGTAGTAAGACTTTTGAAGGCATTGGTGAATATAAATGAACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * *
3902 TCTTGCTAATGAATAATTTTTTCTTCACGTTTCCAGAGGTAGACATTCGATTATAATCTGTTTTT
66 TCTTGC-AATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
* * * *
3967 ACAAAAAATGTAAAAAAATTCTACTTCAACTCAATTATGAG
130 ATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * ** * *
4008 ATTATAAAACTATTCAAAGCGAGTAACAAGACTTTTGAAATCATGGGTAACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
** * * * * * * *
4073 TCTTGTCAATGAATGGCTTTTTCTTAATATTT-CTCAAGGCAGAGATTTAATTATAATCTATTTT
66 TCTTG-CAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTTT
** *
4137 AACCAAGAATG-AAAAACAAATTCAACTT-AAAGTCAATTATGAG
129 AATAAAAAATGTAAAAA-AAA-TCAACTTCAAA-TCAATTATGAG
*
4180 ATTATAAAACCATTTAAAGTGAGT-ATAAGGCTTTTGAAGGCATAGGTGACTATAAAATGGACTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTAT-AAATGGACTT
* * * * *
4244 TTCTTGTCAATGAATATCTTTTACTAT-AGGTTT-CTCGAGGTAGCCATTCAGTTATAATCTGTT
65 TTCTTG-CAATGAATAACTTTTTCT-TCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTT
* * * * * * *
4307 TTAATAAAAACTATAAAAAAATTCAACATAAAATCAAGTACGAG
127 TTAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * ** * * * * *
4351 ATTATAAGGACTA-TTAAAGTAAGTAATAAGGCTTTTGAAGGTAT-GAGTGAGTACACATGAACT
1 ATTATAA-AACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAG-GTGACTATAAATGGACT
** * ** * *
4414 TTTCTCACCAATGAATAGCTTTTTCTTCACATTT-CTCGAGGTATACATTCAATTATGAT-TCGA
64 TTTCT-TGCAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCT-G-
** * * * *
4477 TTTT-ACCAAAAATG-AAAAAAATTTAACTT-AAAGCCAATTAGGAG
125 TTTTAATAAAAAATGTAAAAAAAATCAACTTCAAA-TCAATTATGAG
* * *
4521 ATTATAAAGCCATTTAACGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAAAGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * *
4586 TCTTGCAAATGAATAACTTTTTCTTCATCTTTCCTGAGGTAGACATTCAATTATAATTTCTTTTA
66 TCTTGC-AATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
*
4651 ATAAAAAATGTAAAAAAATTCAACTTCAAATCAATTATGAG
130 ATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * *
4692 ATTATAAAGCCATTTAAAGGGAGTAATAAGGATTTTGAAGACATAGGTTACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * * * *
4757 TTTTGCCAATGAATATCTTTTT-TTGCATATTT-CTCAAGGTAAACATTCAGTTATAATCTATTT
66 TCTTG-CAATGAATAACTTTTTCTT-CATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
* * * *
4820 TAATAAAAAATATAAAAAAATTCAA-TATAAAATCAAGTT-TGAT
128 TAATAAAAAATGTAAAAAAAATCAACT-TCAAATCAA-TTATGAG
* * * * * * * *
4863 ATTATAAAAACAATTAAAGCAAGTAATAAGACATTTGAAGGCATGGGTGAGTATACATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* ** * * * *
4928 TCTTACCAATGAATGGCTTTTTCTTCATATTT-CTCAAGGTAGACATTTAATTATAATCTATTTT
66 TCTT-GCAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTTT
** * * *
4992 AACCAAAAATGTCAAAAAATTCAACTT-AAAGTCAAGTATGAG
129 AATAAAAAATGTAAAAAAAATCAACTTCAAA-TCAATTATGAG
* ** * * *
5034 ATTATTAGCCCATTTAAAGCGAGTAATAAGGATTTTAAAGGCATAGGTAACT-T---T-G---TT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * *
5091 GC---CAATGAATAACTTTTTCTTTATGTTTCCTAAGGTAGACATTCAATTATAATCTGTTTTAA
66 TCTTGCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTAA
* * *
5153 TAAAAACTATAAAAAACATCAACTTCAAATCAATTATGAG
131 TAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * *
5193 ATTATAAAACTATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATAGGTAACAATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * ** * * *
5258 TCTTGCCAATGAATATA-ATTTTCTACACATTT-CTCAAAGTAGACATTCAATTATAATCTATTT
66 TCTTG-CAATGAATA-ACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
* * * ** * *
5321 TAATAAACAATATAAAAAAATTTTACTTTAAAATCAATTATGAA
128 TAATAAAAAATGTAAAAAAAATCAAC-TTCAAATCAATTATGAG
* ** * * * * * *
5365 AATATAAAAATAATTACAGCAAGTAATAAGGCTTTCGAAAGCATGGACGAG-GAGTATAAATGGA
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCAT--A-G-GTGACTATAAATGGA
* ** * * *
5429 CTTTTCTCGACAATGAATGGCTTTTTCTTCACGTTT-CTCAAGGTAGACATTCAAATATAATCTG
62 CTTTTCTTG-CAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTG
* ** * *
5493 TTTTGACCAAAAATG-AAAAAAAGTTAACTT-AAAGTCAATTATGAG
125 TTTTAATAAAAAATGTAAAAAAAATCAACTTCAAA-TCAATTATGAG
* * * * *
5538 ATTATAAAGCCATTTAAAGCGACTAATAAGACTTTTGAAAGTATAGGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * *
5603 TCTTG-AGAGTGAATAACTTTTTCTTTACGTTT-TTCAAGGTAAACATTCAATTATAATCTGTTT
66 TCTTGCA-A-TGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
* * ** *
5666 TAATAAAAAATAT-AAAAAATTTGACTTCAAATCAATTTTGAG
128 TAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * * *
5708 ATTATAAAACTATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATAGGTGACAATGAATGGAGTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * * * * * *
5773 TCTTGCCGAAT-AATATCTTTTTCTACACGTTTCTTAAGGTAAACTTTCAATTATAATATATTTT
66 TCTTG-C-AATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTT
* * * * * *
5837 AATAAAAAATATAAAACAATTTAACTTAAAATCAAGTATGAG
129 AATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
** * * * * * *
5879 ATTATAAAAATAATTAAAGCAAGTAATAAGGCTTTCGAAGGCATCGGTGAGTATAAATAGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
** ** * * * * *
5944 TCTCACCAATGAATGGCTTTTTCTTTATATTT-GTTATGGTAGACATTCAAATATAATCTGTTTT
66 TCT-TGCAATGAATAACTTTTTCTTCATGTTTCCTGA-GGTAGACATTCAATTATAATCTGTTTT
* ** * * *
6008 TACCAAAATTGAAAAAAAAGAAT-AACTT-AAAGTCAATCATGAG
129 AATAAAAAATG-TAAAAAA-AATCAACTTCAAA-TCAATTATGAG
* * * * * *
6051 ATTATAAAGCCACTTAAAGTGAGTAATAAGGCTTTTGAAGGCATACGTGACTATAAGTAGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * *
6116 TCCTGCCAATGAATAACTTTTTCTTCACGTTT-CTCGAGTTAAACATTCAATTATAATCTATTTT
66 TCTTG-CAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTTT
** * * *
6180 AACCAGAAATG-AAAAAAAATTCAACCT-AAAGTCAATTATAAG
129 AATAAAAAATGTAAAAAAAA-TCAACTTCAAA-TCAATTATGAG
********** * *
6222 ATTATAANNNNNNNNNNAGTGAGTAATAAGGCTTTTGAA-GCATTGGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * *
6286 TCATGCCAATGAATATCTTTTT-TTGCATGTTT-CTCGAGATGGACATTCAATTATAATCTGTTT
66 TCTTG-CAATGAATAACTTTTTCTT-CATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
* * * * * *
6349 TAATAAAAAATATAGAAAAACTTAACTTTAAAATCAATAATGAG
128 TAATAAAAAATGTAAAAAAAATCAAC-TTCAAATCAATTATGAG
* ** * * * ** * * * *
6393 AATATAAAAATAATTAAAGCAAGTAATAAAGCTTACGAAGGTAT-GAGCGAGTATAAATAGACTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAG-GTGACTATAAATGGACTT
* * * * *
6457 GTT-TTATCAAT-AATTAACTTTTTCTTTACGTTTCCTGAGGTAGACATTCAATTATAAGCCGTT
65 -TTCTT-GCAATGAA-TAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTT
** *
6520 TTAATAAAAAATGT-AAAAATTTTAACTTCAAATCAATTATGAG
127 TTAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * ** ** *
6563 ATTATAAAATCATTTAAAGTGAGTAATAGGGCTTCCGAATACATAGGTGATTATAAATGGACTTG
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTT-
* ** * *
6628 TT-TTGCCAATGAATAACTTTTTCTTTACATTTCCTGAGGTAGACATTTAATTATAATATGTTTT
65 TTCTTG-CAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTT
** **
6692 AA-AAAAAATGT-AAAAACTTCAACTTCGGATCAATTATGAG
129 AATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * *** *
6732 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTCTAAATATATAGGTGACTATAAATGGATTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * *
6797 TTTTGCCAATGAATAACTTTTTCTTTACGTTTCCCGAGGTAGACATTCAATTATAATCTATTTTA
66 TCTTG-CAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
* * **
6862 ATAAAAAATAT-GAAAATTTCAACTTCAAATCAATTATGAG
130 ATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * *** * * *
6902 ATTATAAAACCATTTAAAACAAGTATTAGGGCTTCCAAATGTATAGGTGACTATAAATGGATTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGA-CTT
* * *
6967 TTCTTGCCAATGAATAACTTTTTCTTTATGTTTTCC-GAGGTAGACATTCAGTTATAATCTATTT
65 TTCTTG-CAATGAATAACTTTTTCTTCATG-TTTCCTGAGGTAGACATTCAATTATAATCTGTTT
* * * * *
7031 TAATAAAAAATATAAAAAAATTCAACATAAAATCAAATATGAG
128 TAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * * *
7074 ATTATAAAA-AATAATTAAAGCAAGTAATAAGGCTTTCGAAGGTAT-GGATGAGTATAAATAGAC
1 ATTATAAAACCAT--TTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGG-TGACTATAAATGGAC
* ** * * * * *
7137 TCTTCTCACCAAT-AAGTAGCTTTTTCTACAAGTTT-CTCGAGGTAGACATTTAATTATAAT-TT
63 TTTTCT-TGCAATGAA-TAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTG
** * *
7199 TTTTAACCAAAAA--TAAAAAAAATCAACTT-AAAGTCAGTTATAAG
125 TTTTAATAAAAAATGTAAAAAAAATCAACTTCAAA-TCAATTATGAG
** * * * * * * *
7243 ATTATAAATGCAATTAAAGCGAATAGTAAGACTTTTGAAGGCATATGTGAATATAAATGAACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * * *
7308 TCTTGCCAATGAATAACTTTTTCTCCATATTTTCAGAGGTAGACATTCGATTATAATCTATTTTA
66 TCTTG-CAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
* *
7373 ACAAAAAATGTAAAAAAATTTC-ACTTC-AATGCAATTATGAG
130 ATAAAAAATGTAAAAAAA-ATCAACTTCAAAT-CAATTATGAG
* * * ** * * *
7414 ATTATAAAACTATTCAAAGCGAGTAACAAGGCTTTTGAAATCATGGGTAACTATAAATGAACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* ** * * *
7479 TCTTACCAATGAATGGCTTTTTCTTCATGTTT-CTCGAGGTAGAGATTTAATTATAATCTGCTTT
66 TCTT-GCAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTTT
** *
7543 AACCAAAAAT-AAAAAAAAATTCAACTT-AAAGTCAATTATGAG
129 AATAAAAAATGTAAAAAAAA-TCAACTTCAAA-TCAATTATGAG
* * *
7585 ATTATAAAACCATTTAAAGTGAGT-ATAAGGTTTTTGAAGGCATAGGTGACTATAAAATGAACTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTAT-AAATGGACTT
* * * * * *
7649 TTCTTGTAAATGAATATCTTTTTCTACAGGTTT-CTCGA-GTAGACATTCAGTTATAATCTATTT
65 TTCTTG-CAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
* * * * * * * *
7712 TAATAAAAACTATGAAAAAATTCAACATAAAATCAAGTACGAG
128 TAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * * * *
7755 ATTATAAGAACTA-TTAAAGCAAGTAATAAGGCTTTTGAAGGCATGGGTGAGTACACATGAACTT
1 ATTATAA-AACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTT
** * * * * * * *
7819 TTCTCACCAATGAATGATTTTTTCTTCACGTTTCTTGAGGTATAAATTCAATTATAATTTGTTTT
65 TTCT-TGCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTT
* ** *
7884 GACCAAAAA--CAAAACAAAAT-AACTT-AAAGTCAATTATGAG
129 AATAAAAAATGTAAAA-AAAATCAACTTCAAA-TCAATTATGAG
* * * **
7924 ATTATAAAGCCATTTAAAGCGAGTAGTAAGGTTTTTGAAGGCATAGGTGACTATAAAAAGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* *
7989 TCTTGCCAATAAATAACTTTTTCTTCATATTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
66 TCTTG-CAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
* * *
8054 ATAAAAAATATAAAAAAATTTAACTTCAAATCAATTATGAG
130 ATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
** * * * * * *
8095 ATTATAAAACCATTTATGGGGAGTAATAGGGCTTTCGAATGTATAGGTGACTATAAATGAACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * * *
8160 TTTTGCCAATGAATAATTTTTTCTTTACGTTT-CTCGAGGTAAACATTCAATTATAATATGTTTT
66 TCTTG-CAATGAATAACTTTTTCTTCATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTTT
** * *
8224 AATAAAAAATGT-AAAAACTTTAGCTTCAAATCAATTATGAG
129 AATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * *
8265 ATTATAAAGCCATTTAAAGCGACTAATAAGGCTTTTAAAGGCATAGGTGAATACAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * * * *
8330 TTTTATCAATAAATATCTTTTT-TTACACGTTT-CTCAAGGTAGACATTCAGTTATAATCTGTTT
66 TCTT-GCAATGAATAACTTTTTCTT-CATGTTTCCT-GAGGTAGACATTCAATTATAATCTGTTT
** * * * * * *
8393 TAATAAAAAATACAAAAAAATTCAACATAAAATAAAGTACGAG
128 TAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * ** * * * *
8436 ATTATAAAAACAATTAAAGTAAGTAATAAGGCTTTTGATGGCATGGGTGAGTATACATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
** * * * * * *
8501 TCTCACCAATGAATAGCTTTTTCTTTATGTTTCTTGAAGTAGACATTTC-ATTATAATTTCTTTT
66 TCT-TGCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACA-TTCAATTATAATCTGTTTT
** * * *
8565 AACCAAAAATG-ATAAAAAATTCAACTT-AAGTCAAGTATGAG
129 AATAAAAAATGTA-AAAAAAATCAACTTCAAATCAATTATGAG
* * * * *
8606 ATTAT-TAGCTCATTTAAAGCGAGAAATAAGGCTTTTGACAGG-ATAGGCGAATATAAATGGACT
1 ATTATAAAAC-CATTTAAAGCGAGTAATAAGGCTTTTGA-AGGCATAGGTGACTATAAATGGACT
* * * * *
8669 TTT-TGTCACCAATGAATAACTTTTTCTT-TTCGTTTCTTGAGGTAAACATTCAATTAAAATCTG
64 TTTCT-T--GCAATGAATAACTTTTTCTTCAT-GTTTCCTGAGGTAGACATTCAATTATAATCTG
* * * *
8732 TTTTAATCAAAACTATAAAAAACATCAACTTCAAATCAATTATGAG
125 TTTTAATAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
* * * * * * *
8778 ATTATAAATCTATTTAAAGCGAGTAAAAAGACTTCTGAAGGTATAGGTGGCTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
* * * * * * * *
8843 TCTTACCAATAAATATCATTTTCTGCACGTTTCTTGAAGTAGACATTCAATTATAATCTGTTTTA
66 TCTT-GCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTA
* * * * *
8908 ATAAATAATGTAAAAAAAATTCTACTTTAAAATTAATTATGCG
130 ATAAAAAATGTAAAAAAAA-TCAAC-TTCAAATCAATTATGAG
* * * * * * * **
8951 AATATAAAAAC-TATTACAGCAAGTAATAAGGCTTTTGAAGGTATGGGCGAGAATAAATGGACTT
1 ATTATAAAACCAT-TTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTT
** * * * *
9015 TTCTCAACAATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAGACATTCAAATATAATCTGTTTT
65 TTCT-TGCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTT
* ** *
9080 GACCAAAAAT-AAAAAAAAATTC-ACTT-AAAGTCAATTATGAG
129 AATAAAAAATGTAAAAAAAA-TCAACTTCAAA-TCAATTATGAG
* * * * * *
9121 AGTATAAAGCCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAAGAGACTAGAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
Statistics
Matches: 6528, Mismatches: 1579, Indels: 674
0.74 0.18 0.08
Matches are distributed among these distances:
158 12 0.00
159 226 0.03
160 7 0.00
161 6 0.00
162 1 0.00
163 5 0.00
164 3 0.00
165 2 0.00
166 2 0.00
167 5 0.00
168 106 0.02
169 465 0.07
170 1611 0.25
171 2369 0.36
172 1193 0.18
173 303 0.05
174 14 0.00
175 74 0.01
176 1 0.00
177 6 0.00
178 2 0.00
179 3 0.00
180 2 0.00
181 1 0.00
182 1 0.00
183 3 0.00
184 7 0.00
185 24 0.00
186 29 0.00
187 28 0.00
188 17 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (170 bp):
ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
TCTTGCAATGAATAACTTTTTCTTCATGTTTCCTGAGGTAGACATTCAATTATAATCTGTTTTAA
TAAAAAATGTAAAAAAAATCAACTTCAAATCAATTATGAG
Found at i:4791 original size:341 final size:340
Alignment explanation
Indices: 3--9185 Score: 6407
Period size: 341 Copynumber: 26.9 Consensus size: 340
1 CA
* *
3 AGGTAGACATTCAATTATAATCTGTTTTAA-TAAGAAATGTAAAAAAATTCAACATTTAA-TCAA
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAA-AAATG-AAAAAAATTCAAC-TTAAAGTCAA
* * * *
66 TTATGAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTCTAAAGGTATAGGTGACTATAAAT
62 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAAT
********** * * * * *
131 GGACTTTTNNNNNNNNNNAATATCTTTTTCTACA-CGTTTCTTGATGTAGACATTCAATTATATT
127 GGACTTTTCTTGCCAATGAATAACTTTTTCTTCATC-TTTCTCGAGGTAGACATTCAATTATAAT
* * * *
195 CTATTTTAAT-AAAAATATAAAAACATTTAACTTAAAATCAACTATG-GAGTTATAAAACCATTT
191 CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTT
* * * * * *
258 AAACCAAGTAGTAAGGCTTTTGAAGACATGGGTGACTATAAATGGAC-TTTCTTACCAATAAATA
255 AAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATA
* * * **
322 CCTTTTTCTTGATGTTTCTTA
320 GCTTTTTCTTCACGTTTCTCG
* ** *
343 AGGTAGACGTTCAATTATAATCTGTTTGGACTAAAAATGAAAAAAAGTTCAACTTAAAGTCAATT
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAATGAAAAAAA-TTCAACTTAAAGTCAATT
* ********** ** *
408 ACGAGATNNNNNNNNNNTTTAAAGCGAGTAATAAGGCTTTCCAAGGCATAGGTGACTATAAATTG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGG
* * **********
473 ACTTTT-TCTGCTAATGAATAACTTTTTCTTCA-CGTTTCTTGAGGTAGACANNNNNNNNNNATC
129 ACTTTTCT-TGCCAATGAATAACTTTTTCTTCATC-TTTCTCGAGGTAGACATTCAATTATAATC
* * *
536 TGTTTTAATAAAAAATGTAAAACAATTCAA--T----T---TTA--A-ATTATAAAACTATTTAA
192 TGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * *
589 AGCGAGTAATAAAG-TTTTCAAAGGCATAAGTGACTATAAATGGACTTTGCTTACCACTGAATAA
257 AGCGAGTAATAAGGCTTTT-GAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAG
*
653 CTTTTTCTTCACGTTTCTTG
321 CTTTTTCTTCACGTTTCTCG
* * * ** ** *
673 AAGTAAACATTCAATTATAATATGTTTTAATAAAAAAT-ATAAAAAATTCAACAGAAAATCAATT
1 AGGTAGACATTCAATTATAAT-CGTTTTAACCAAAAATGA-AAAAAATTCAACTTAAAGTCAATT
* ** * * * * * * *
737 ATGAGATTATAAAAACAACTAAAGCAAGTAATAGGGCTTTCGAAGGTAT-GAGTAAGTATAAATT
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAG-GTGACTATAAATG
** * ** * * *
801 GACTTTTCTCACCACTGAATGGCTTTTTCTTCATGTTTCTCGAGGTAGCCATTTAATTATAATCT
128 GACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGAGGTAGACATTCAATTATAATCT
** * * *
866 AATTTAACT-AAAAATA-AAAAAAACTCAACTTAAACTCAATTATAAGATTATAAAACCATTTAA
193 GTTTTAA-TAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * *
929 GGCGAATAATAAGGCTTTTGAAGGCACAAGTGACTATAAAAGGACTTTTCTT-GCAGATGAATAA
257 AGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCA-ATGAATAG
* * *
993 CTTTTTATGCATGTTTC-CTG
321 CTTTTTCTTCACGTTTCTC-G
* * ** *
1013 AGATAGACATTCAATTATGATAT-GTTTTCATAAAAAATGTAAAAAAAATCAACTTCAAA-TCAA
1 AGGTAGACATTCAATTAT-A-ATCGTTTTAACCAAAAATG-AAAAAAATTCAACTT-AAAGTCAA
* * * *
1076 TTATGAGGTTATAAAACTATTTAAAACGAGTAATAGGGCTTTTGAAGGCAT-GAGTGACTATAAA
62 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAG-GTGACTATAAA
* * * * * * *
1140 TGGACTTTTCTTGTCAATGAATGACTTGTTCTTGA-CATTTCTTGAGGTAGATATTTAATTATAA
126 TGGACTTTTCTTGCCAATGAATAACTTTTTCTTCATC-TTTCTCGAGGTAGACATTCAATTATAA
* * * * * * *
1204 TCTGTTTTCACT-ATAAATGA-AAAAAAATTCTACTCAAAGTCAATTATGAGATGATAAAATCAT
190 TCTGTTTT-AATAAAAAAT-ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT
** * * * **
1267 TTAAAGATAGTAATAAGGCTTTTGAAGACATAGATGACTATAAATGGACTTTTTCGTGGCAATGA
253 TTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGAC-TTTTCTTACCAATGA
* * * * *
1332 ATATCTTTTTCTTTACATTTCCCA
317 ATAGCTTTTTCTTCACGTTTCTCG
* * * * * *
1356 AGATAGATATACAATTACAATC-TATTTGAA-TAAAAATGTAAAAAACTTCAACTTCAAA-TCAA
1 AGGTAGACATTCAATTATAATCGT-TTT-AACCAAAAATG-AAAAAAATTCAACTT-AAAGTCAA
* *
1418 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGCCATGGGTGACTATAAAT
62 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAAT
* ** * * *
1483 GGATATTTTC-TGCCAATGAATGGCTTTTTCTTCATGTTTCTCAAGGTAGACATTTAATTATAAT
127 GGA-CTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGAGGTAGACATTCAATTATAAT
* * * *
1547 CTGTTTGGACT-AAAAATA-AAAACAAAAT-AACTT-AAGTCAATTATGAGATTATAAAACCATT
191 CTGTTT-TAATAAAAAATATAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* **
1608 TAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTT-TCGAGGTAATGA
254 TAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCT-TA-CCAATGA
* ** * *
1672 ATATCTTGGTCCTCATGTTTCT-G
317 ATAGCTTTTTCTTCACGTTTCTCG
* * * * ** *
1695 AAGATAAACATTCAATTAGAATCTATTTTAATAAAAAATGTAAAAAAATTTAACTTCAAA-TCAA
1 -AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAATG-AAAAAAATTCAACTT-AAAGTCAA
* * *
1759 TTATGAGATTATAAAGCCATTTAGAGCGAGTAATAAGGCTTTTGAAGGCATAGATGACTATAAAT
62 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAAT
* ** * * * * * *
1824 GGACTTTTTTTATCAATGAATATCTCTTTCTGCATGTTTCTTGAGGTAGACATTCAGTTATAATC
127 GGACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGAGGTAGACATTCAATTATAATC
* * * * * * * ** * *
1889 TGTTTTGATAAAAAATACAAAAACAATTTAACATAAAATCAAGTACGAGATTACAAAAATAATTG
192 TGTTTTAATAAAAAATATAAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * * **
1954 AAGCAAGTAATAAGGCTTTTGAAGGCAT-GGATGAGTATAAATGAACTTTTCTTATGAATGAATA
256 AAGCGAGTAATAAGGCTTTTGAAGGCATAGG-TGACTATAAATGGACTTTTCTTACCAATGAATA
* ** *
2018 GCTTTTTTTTCATATTTCTAG
320 GCTTTTTCTTCACGTTTCTCG
* * *
2039 AGGTAGATATTCAATTATAGTCTGTTTTAACCAAAAGTGAAAAAAAATTCAACTTAAAGTCAATT
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAATG-AAAAAAATTCAACTTAAAGTCAATT
* * ** * *
2104 ATGAGATTATAAAACCATATAAAGCGAGTAATACA-GCTTTGGAAGGTGTGGGTGACTATAAGTG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATA-AGGCTTTTGAAGGCATAGGTGACTATAAATG
* * ** ** * * * * * *
2168 GA-GTTTCTTGCTAATGAATGCCTTGGTCTTCATGTTTCTTGAAGTAAACATTTAATTATAATAT
128 GACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGAGGTAGACATTCAATTATAATCT
* * ** *
2232 GTTTTAACAAAAAATGAAAAAACAAATTCAACTTAACGTCAATTATGAGATTATAAAATCATTTA
193 GTTTTAATAAAAAAT-ATAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * * * * *
2297 AAGCGAGTAATAAGACTTTTGAAGGCATAGGTGATTATAAATGGACTTTTCTTACTAATAAAAAA
256 AAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAG
* * *
2362 CTTTTTCTTTACGTTTTTTG
321 CTTTTTCTTCACGTTTCTCG
* * * *
2382 AGGTAGACATTCAATTATAATATGTTTCAA-TAGAAAATATAAAAAAATTCAACTTCAAA-TCAA
1 AGGTAGACATTCAATTATAAT-CGTTTTAACCA-AAAAT-GAAAAAAATTCAACTT-AAAGTCAA
* * *
2445 TTATGAGATTATAAAACCATTTAAAGCGTGTAATAAGGCTTTTGAAGGAATAGGTGATTATAAAT
62 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAAT
** * *
2510 GGACTTTTCTAACCAATGAATATCTTTTT-TTGCA-CATTTCTCAAGGTAGACATTCAATTATAA
127 GGACTTTTCTTGCCAATGAATAACTTTTTCTT-CATC-TTTCTCGAGGTAGACATTCAATTATAA
* * *
2573 TCTGTTTTAATAAAAAATAT-AAAAAAGTCAACTTCAAAATCAATAATGAGAATATAAAA--ATG
190 TCTGTTTTAATAAAAAATATAAAAAAATTCAACTT-AAAATCAATTATGAGATTATAAAACCAT-
* * * * * * * *
2635 ATTAAAGCAAGTAAAAAGGCTTTCGAAGTCATGGGTGAGTATAAATGGGCTTTTTTTACCAATGA
253 -TTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGA
* *
2700 ATAACTTTTTCTTTACGTTT-TCTG
317 ATAGCTTTTTCTTCACGTTTCTC-G
* * * * * *
2724 AGGTACACATTCAATTACAATCTGTTTTTTA--AAAAATGTAAAAACTTCAACTTCAAA-TCATT
1 AGGTAGACATTCAATTATAATC-G-TTTTAACCAAAAATGAAAAAAATTCAACTT-AAAGTCAAT
***************
2786 TATGAGATTATAAAACCATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
63 TATGAGATTATAAAACCATTTAAA--------------------------GCGAGTAATAAGGCT
*****************************************************************
2851 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
102 TTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTC
********************************* *** * * *
2916 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT-TTTAGTAAAAAATGTAAAAAAATTTCAAAT
167 TCGAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAAT-ATA------AAAAAA-TTC-AAC
* * * * ** * * *
2980 TTAAAATCAATTATGAGAATCTAAAAACAATTAAAGTAAGTAATAAGACTTTTAAAGGCATAGGC
223 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGT
* * * * *
3045 GAGTATAAATAGACTATTCTCACCAATGAATAGCTTTTTCTTCACGTTTCTCA
288 GACTATAAATGGACTTTTCTTACCAATGAATAGCTTTTTCTTCACGTTTCTCG
* * * **
3098 AGGTAGACATTCAATTATAATATGTTGTGACCAAAAA--AAAAAAA-AAAACTTAAAGTCAATTA
1 AGGTAGACATTCAATTATAAT-CGTTTTAACCAAAAATGAAAAAAATTCAACTTAAAGTCAATTA
* * ** *
3160 TGAGATTATAAAGCCATTTAAAGCCAGTAATAAGATTTTTGAAGGTATAGGTGACTATAAATGGA
65 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGA
* * * * * * * * * *
3225 CTTTTCTTGTCAATAAATATCTTTTTCTGCA-CATTTCTCAAGGGAAACATTTAGTTATAAACTG
130 CTTTTCTTGCCAATGAATAACTTTTTCTTCATC-TTTCTCGAGGTAGACATTCAATTATAATCTG
* * * * * ** *
3289 TTTTAACT-AAAAATATAAAACAAATTCAGCATAAAATCAAGTACGAGATTACAAAAATAATTAA
194 TTTTAA-TAAAAAATATAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * *
3353 AGCAAGTAATAAGGCTTTTGAAGGTAT-GGTTGAGC-ATAAATGGACTATTCTCACCCATGAATG
257 AGCGAGTAATAAGGCTTTTGAAGGCATAGG-TGA-CTATAAATGGACTTTTCTTACCAATGAATA
* *
3416 GCTTTTTCTTCATGTTTCTCA
320 GCTTTTTCTTCACGTTTCTCG
* * *
3437 AGAT-GAACATTTAATTATAATCTGTTTTAACTAAAAATGGAAAAAAAATTCAACTTAAAGTCAA
1 AGGTAG-ACATTCAATTATAATC-GTTTTAACCAAAAAT-G-AAAAAAATTCAACTTAAAGTCAA
* *
3501 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGCATAGGCGACTATAAAT
62 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAA-
** * * * * * * * *
3566 TGG-CTTTTCTTATCAAGGAATATCTCTTTCTTCATGTTTGTCAATGTAGACATTCAGTTATAAT
126 TGGACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGAGGTAGACATTCAATTATAAT
* * * *
3630 CTGTTTTAATAAAAAATA-AAAAAAA-T---C-----A--AA-TATGAGAATACAAAAACTAATT
191 CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTA-TAAAACCATTT
* * * * *** *
3682 AAGGCAAGTAATAAGGCTTTCGAAGGCATGGGTCTGTATAAATGGACTTTTCTTACCAATGAATG
255 AAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATA
* * *
3747 GCTTTTTCTACATGTTTCTTG
320 GCTTTTTCTTCACGTTTCTCG
* * * *
3768 AGGTAGACGTTTAATTATAATTTGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAGTCAATTA
1 AGGTAGACATTCAATTATAA-TCGTTTTAACCAAAAATGAAAAAAATTCAACTTAAAGTCAATTA
* * * * * * *
3833 TGATATTATAAAACCAATTAAAGCGAGTAGTAAGACTTTTGAAGGCATTGGTGAATATAAATGAA
65 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGA
* * *
3898 CTTTTCTTGCTAATGAATAATTTTTTCTTCA-CGTTTC-CAGAGGTAGACATTCGATTATAATCT
130 CTTTTCTTGCCAATGAATAACTTTTTCTTCATC-TTTCTC-GAGGTAGACATTCAATTATAATCT
* * * * * * * *
3961 GTTTTTACAAAAAATGTAAAAAAATTCTACTTCAACTCAATTATGAGATTATAAAACTATTCAAA
193 GTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * ** * * ** *
4026 GCGAGTAACAAGACTTTTGAAATCATGGGTAACTATAAATGGACTTTTCTTGTCAATGAATGGCT
258 GCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAGCT
* ** *
4091 TTTTCTTAATATTTCTCA
323 TTTTCTTCACGTTTCTCG
* * * * *
4109 AGGCAGAGATTTAATTATAATCTATTTTAACCAAGAATGAAAAACAAATTCAACTTAAAGTCAAT
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAATG-AAAA-AAATTCAACTTAAAGTCAAT
*
4174 TATGAGATTATAAAACCATTTAAAGTGAGT-ATAAGGCTTTTGAAGGCATAGGTGACTATAAAAT
63 TATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTAT-AAAT
* * * ** * *
4238 GGACTTTTCTTGTCAATGAATATCTTTTACTAT-AGGTTTCTCGAGGTAGCCATTCAGTTATAAT
127 GGACTTTTCTTGCCAATGAATAACTTTTTCT-TCATCTTTCTCGAGGTAGACATTCAATTATAAT
* * * * * *
4302 CTGTTTTAATAAAAACTATAAAAAAATTCAACATAAAATCAAGTACGAGATTATAAGGACTA-TT
191 CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA-AACCATTT
** * * * * * *
4366 AAAGTAAGTAATAAGGCTTTTGAAGGTAT-GAGTGAGTACACATGAACTTTTCTCACCAATGAAT
255 AAAGCGAGTAATAAGGCTTTTGAAGGCATAG-GTGACTATAAATGGACTTTTCTTACCAATGAAT
*
4430 AGCTTTTTCTTCACATTTCTCG
319 AGCTTTTTCTTCACGTTTCTCG
* * * *
4452 AGGTATACATTCAATTATGATTCGATTTT-ACCAAAAATGAAAAAAATTTAACTTAAAGCCAATT
1 AGGTAGACATTCAATTAT-AATCG-TTTTAACCAAAAATGAAAAAAATTCAACTTAAAGTCAATT
* * * *
4516 AGGAGATTATAAAGCCATTTAACGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAAAGG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGG
* *
4581 ACTTTTCTTGCAAATGAATAACTTTTTCTTCATCTTTC-CTGAGGTAGACATTCAATTATAATTT
129 ACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTC-GAGGTAGACATTCAATTATAATCT
* * * *
4645 CTTTTAATAAAAAATGTAAAAAAATTCAACTTCAAATCAATTATGAGATTATAAAGCCATTTAAA
193 GTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * * * * *
4710 GGGAGTAATAAGGATTTTGAAGACATAGGTTACTATAAATGGACTTTTTTTGCCAATGAATATCT
258 GCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAGCT
** *
4775 TTTT-TTGCATATTTCTCA
323 TTTTCTT-CACGTTTCTCG
* * * ** * *
4793 AGGTAAACATTCAGTTATAATCTATTTTAATAAAAAATATAAAAAAATTCAA-TATAAAATCAAG
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAAT-GAAAAAAATTCAACT-TAAAGTCAA-
* * * * * * * * *
4857 TT-TGATATTATAAAAACAATTAAAGCAAGTAATAAGACATTTGAAGGCATGGGTGAGTATACAT
62 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAAT
* ** * * *
4921 GGACTTTTCTTACCAATGAATGGCTTTTTCTTCATATTTCTCAAGGTAGACATTTAATTATAATC
127 GGACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGAGGTAGACATTCAATTATAATC
* ** * * * * * **
4986 TATTTTAACCAAAAATGTCAAAAAATTCAACTTAAAGTCAAGTATGAGATTATTAGCCCATTTAA
192 TGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * *
5051 AGCGAGTAATAAGGATTTTAAAGGCATA-G-G----T--A---AC-TTTGTTGCCAATGAATAAC
257 AGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAGC
* * *
5104 TTTTTCTTTATGTTTC-CTA
322 TTTTTCTTCACGTTTCTC-G
* *
5123 AGGTAGACATTCAATTATAATCTGTTTTAA-TAAAAACT-ATAAAAAACATCAACTTCAAA-TCA
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAA-TGA-AAAAAA-TTCAACTT-AAAGTCA
* * * * *
5185 ATTATGAGATTATAAAACTATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATAGGTAACAATAAA
61 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAA
* * * *
5250 TGGACTTTTCTTGCCAATGAATATA-ATTTTCTACA-CATTTCTCAAAGTAGACATTCAATTATA
126 TGGACTTTTCTTGCCAATGAATA-ACTTTTTCTTCATC-TTTCTCGAGGTAGACATTCAATTATA
* * ** * * ** *
5313 ATCTATTTTAATAAACAATATAAAAAAATTTTACTTTAAAATCAATTATGAAAATATAAAAATAA
189 ATCTGTTTTAATAAAAAATATAAAAAAATTCAAC-TTAAAATCAATTATGAGATTATAAAACCAT
* * * * * *
5378 TTACAGCAAGTAATAAGGCTTTCGAAAGCATGGACGAG-GAGTATAAATGGACTTTTCTCGA-CA
253 TTAAAGCGAGTAATAAGGCTTTTGAAGGCAT--A-G-GTGACTATAAATGGACTTTTCT-TACCA
* *
5441 ATGAATGGCTTTTTCTTCACGTTTCTCA
313 ATGAATAGCTTTTTCTTCACGTTTCTCG
* *
5469 AGGTAGACATTCAAATATAATCTGTTTTGACCAAAAATGAAAAAAAGTT-AACTTAAAGTCAATT
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAATGAAAAAAA-TTCAACTTAAAGTCAATT
* * * * *
5533 ATGAGATTATAAAGCCATTTAAAGCGACTAATAAGACTTTTGAAAGTATAGGTGACTATAAATGG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGG
** * * * * *
5598 ACTTTTCTTGAGAGTGAATAACTTTTTCTTTA-CGTTTTTCAAGGTAAACATTCAATTATAATCT
129 ACTTTTCTTGCCAATGAATAACTTTTTCTTCATC-TTTCTCGAGGTAGACATTCAATTATAATCT
** * * *
5662 GTTTTAATAAAAAATAT-AAAAAATTTGACTTCAAATCAATTTTGAGATTATAAAACTATTTAAA
193 GTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * * * * *
5726 GCGAGTAATAAAGCTTTCGAAGGCATAGGTGACAATGAATGGAGTTTTCTTGCCGAAT-AATATC
258 GCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACC-AATGAATAGC
* **
5790 TTTTTCTACACGTTTCTTA
322 TTTTTCTTCACGTTTCTCG
* * ** ** * * *
5809 AGGTAAACTTTCAATTATAATATATTTTAATAAAAAAT-ATAAAACAATTTAACTTAAAATCAAG
1 AGGTAGACATTCAATTATAAT-CGTTTTAACCAAAAATGA-AAAA-AATTCAACTTAAAGTCAAT
** * * * * * *
5873 TATGAGATTATAAAAATAATTAAAGCAAGTAATAAGGCTTTCGAAGGCATCGGTGAGTATAAATA
63 TATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATG
** ** * * * * *
5938 GACTTTTCTCACCAATGAATGGCTTTTTCTTTATATTTGT-TATGGTAGACATTCAAATATAATC
128 GACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGA-GGTAGACATTCAATTATAATC
* ** * * * * * * *
6002 TGTTTTTACCAAAATTGAAAAAAAAGAAT-AACTTAAAGTCAATCATGAGATTATAAAGCCACTT
192 TGTTTTAATAAAAAAT-ATAAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
* * * * * *
6066 AAAGTGAGTAATAAGGCTTTTGAAGGCATACGTGACTATAAGTAGACTTTTCCTGCCAATGAATA
255 AAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATA
*
6131 ACTTTTTCTTCACGTTTCTCG
320 GCTTTTTCTTCACGTTTCTCG
* * * * *
6152 AGTTAAACATTCAATTATAATCTATTTTAACCAGAAATGAAAAAAAATTCAACCTAAAGTCAATT
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAATG-AAAAAAATTCAACTTAAAGTCAATT
* ********** * *
6217 ATAAGATTATAANNNNNNNNNNAGTGAGTAATAAGGCTTTTGAA-GCATTGGTGACTATAAATGG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGG
* * * * *
6281 ACTTTTCATGCCAATGAATATCTTTTT-TTGCATGTTTCTCGAGATGGACATTCAATTATAATCT
129 ACTTTTCTTGCCAATGAATAACTTTTTCTT-CATCTTTCTCGAGGTAGACATTCAATTATAATCT
* * * ** *
6345 GTTTTAATAAAAAATATAGAAAAACTT-AACTTTAAAATCAATAATGAGAATATAAAAATAATTA
193 GTTTTAATAAAAAATATA-AAAAAATTCAAC-TTAAAATCAATTATGAGATTATAAAACCATTTA
* * ** * * * * *
6409 AAGCAAGTAATAAAGCTTACGAAGGTAT-GAGCGAGTATAAATAGACTTGTT-TTATCAAT-AAT
256 AAGCGAGTAATAAGGCTTTTGAAGGCATAG-GTGACTATAAATGGACTT-TTCTTACCAATGAA-
* *
6471 TAACTTTTTCTTTACGTTTC-CTG
318 TAGCTTTTTCTTCACGTTTCTC-G
* ** * * *
6494 AGGTAGACATTCAATTATAAGCCGTTTTAATAAAAAATGTAAAAATTTTAACTTCAAA-TCAATT
1 AGGTAGACATTCAATTATAA-TCGTTTTAACCAAAAATGAAAAAAATTCAACTT-AAAGTCAATT
* * * ** ** *
6558 ATGAGATTATAAAATCATTTAAAGTGAGTAATAGGGCTTCCGAATACATAGGTGATTATAAATGG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGG
* *
6623 ACTTGTT-TTGCCAATGAATAACTTTTTCTTTA-CATTTC-CTGAGGTAGACATTTAATTATAAT
129 ACTT-TTCTTGCCAATGAATAACTTTTTCTTCATC-TTTCTC-GAGGTAGACATTCAATTATAAT
* * * ***
6685 ATGTTTTAA-AAAAAATGT-AAAAACTTCAACTTCGGATCAATTATGAGATTATAAAACCATTTA
191 CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * *** * * * *
6748 AAGCGAGTAATAAGGCTTCTAAATATATAGGTGACTATAAATGGATTTTTTTTGCCAATGAATAA
256 AAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAG
* *
6813 CTTTTTCTTTACGTTTCCCG
321 CTTTTTCTTCACGTTTCTCG
* ** * *
6833 AGGTAGACATTCAATTATAATCTATTTTAATAAAAAAT-ATGAAAATTTCAACTTCAAA-TCAAT
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAATGA-AAAAAATTCAACTT-AAAGTCAAT
* * * * *** * *
6896 TATGAGATTATAAAACCATTTAAAACAAGTATTAGGGCTTCCAAATGTATAGGTGACTATAAATG
63 TATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATG
* * * *
6961 GATTTTTTCTTGCCAATGAATAACTTTTTCTTTATGTTT-TCCGAGGTAGACATTCAGTTATAAT
128 GA-CTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCT-CGAGGTAGACATTCAATTATAAT
* * * *
7025 CTATTTTAATAAAAAATATAAAAAAATTCAACATAAAATCAAATATGAGATTATAAAA-AATAAT
191 CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAT--T
* * * * * * *
7089 TAAAGCAAGTAATAAGGCTTTCGAAGGTAT-GGATGAGTATAAATAGACTCTTCTCACCAAT-AA
254 TAAAGCGAGTAATAAGGCTTTTGAAGGCATAGG-TGACTATAAATGGACTTTTCTTACCAATGAA
* *
7152 GTAGCTTTTTCTACAAGTTTCTCG
318 -TAGCTTTTTCTTCACGTTTCTCG
* ** * *
7176 AGGTAGACATTTAATTATAATTTTTTTAACCAAAAAT-AAAAAAAATCAACTTAAAGTCAGTTAT
1 AGGTAGACATTCAATTATAATCGTTTTAACCAAAAATGAAAAAAATTCAACTTAAAGTCAATTAT
* ** * * * * * * *
7240 AAGATTATAAATGCAATTAAAGCGAATAGTAAGACTTTTGAAGGCATATGTGAATATAAATGAAC
66 GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGAC
* * * *
7305 TTTTCTTGCCAATGAATAACTTTTTCTCCATATTT-TCAGAGGTAGACATTCGATTATAATCTAT
131 TTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTC-GAGGTAGACATTCAATTATAATCTGT
* * * * *
7369 TTTAACAAAAAATGTAAAAAAATTTC-ACTT-CAATGCAATTATGAGATTATAAAACTATTCAAA
195 TTTAATAAAAAATATAAAAAAA-TTCAACTTAAAAT-CAATTATGAGATTATAAAACCATTTAAA
* ** * * * *
7432 GCGAGTAACAAGGCTTTTGAAATCATGGGTAACTATAAATGAACTTTTCTTACCAATGAATGGCT
258 GCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAGCT
*
7497 TTTTCTTCATGTTTCTCG
323 TTTTCTTCACGTTTCTCG
* * * *
7515 AGGTAGAGATTTAATTATAATCTGCTTTAACCAAAAATAAAAAAAAATTCAACTTAAAGTCAATT
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAAAAT-GAAAAAAATTCAACTTAAAGTCAATT
* *
7580 ATGAGATTATAAAACCATTTAAAGTGAGT-ATAAGGTTTTTGAAGGCATAGGTGACTATAAAATG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTAT-AAATG
* ** * * ** *
7644 AACTTTTCTTGTAAATGAATATCTTTTTCTACAGGTTTCTCGA-GTAGACATTCAGTTATAATCT
128 GACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGAGGTAGACATTCAATTATAATCT
* * * * * * *
7708 ATTTTAATAAAAACTATGAAAAAATTCAACATAAAATCAAGTACGAGATTATAAGAACTA-TTAA
193 GTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA-AACCATTTAA
* * * * * * *
7772 AGCAAGTAATAAGGCTTTTGAAGGCATGGGTGAGTACACATGAACTTTTCTCACCAATGAAT-GA
257 AGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAG-
* *
7836 TTTTTTCTTCACGTTTCTTG
321 CTTTTTCTTCACGTTTCTCG
* * * * * *
7856 AGGTATAAATTCAATTATAATTTGTTTTGACCAAAAA-CAAAACAAAAT-AACTTAAAGTCAATT
1 AGGTAGACATTCAATTATAA-TCGTTTTAACCAAAAATGAAAA-AAATTCAACTTAAAGTCAATT
* * * **
7919 ATGAGATTATAAAGCCATTTAAAGCGAGTAGTAAGGTTTTTGAAGGCATAGGTGACTATAAAAAG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGG
* *
7984 ACTTTTCTTGCCAATAAATAACTTTTTCTTCATATTTC-CTGAGGTAGACATTCAATTATAATCT
129 ACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTC-GAGGTAGACATTCAATTATAATCT
* * **
8048 GTTTTAATAAAAAATATAAAAAAATTTAACTTCAAATCAATTATGAGATTATAAAACCATTTATG
193 GTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* * * * * * * * **
8113 GGGAGTAATAGGGCTTTCGAATGTATAGGTGACTATAAATGAACTTTTTTTGCCAATGAATAATT
258 GCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAGCT
*
8178 TTTTCTTTACGTTTCTCG
323 TTTTCTTCACGTTTCTCG
* * ** * * * *
8196 AGGTAAACATTCAATTATAATATGTTTTAATAAAAAATGTAAAAACTTTAGCTTCAAA-TCAATT
1 AGGTAGACATTCAATTATAAT-CGTTTTAACCAAAAATGAAAAAAATTCAACTT-AAAGTCAATT
* * * * *
8260 ATGAGATTATAAAGCCATTTAAAGCGACTAATAAGGCTTTTAAAGGCATAGGTGAATACAAATGG
64 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGG
* ** * * * *
8325 ACTTTTTTTATCAATAAATATCTTTTT-TTACA-CGTTTCTCAAGGTAGACATTCAGTTATAATC
129 ACTTTTCTTGCCAATGAATAACTTTTTCTT-CATC-TTTCTCGAGGTAGACATTCAATTATAATC
* * * * * * *
8388 TGTTTTAATAAAAAATACAAAAAAATTCAACATAAAATAAAGTACGAGATTATAAAAACAATTAA
192 TGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
** * * * * *
8453 AGTAAGTAATAAGGCTTTTGATGGCATGGGTGAGTATACATGGACTTTTCTCACCAATGAATAGC
257 AGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAGC
* * *
8518 TTTTTCTTTATGTTTCTTG
322 TTTTTCTTCACGTTTCTCG
*
8537 AAGTAGACATTTC-ATTATAATTTC-TTTTAACCAAAAATGATAAAAAATTCAACTT-AAGTCAA
1 AGGTAGACA-TTCAATTATAA--TCGTTTTAACCAAAAATGA-AAAAAATTCAACTTAAAGTCAA
* * * * * *
8599 GTATGAGATTAT-TAGCTCATTTAAAGCGAGAAATAAGGCTTTTGACAGG-ATAGGCGAATATAA
62 TTATGAGATTATAAAAC-CATTTAAAGCGAGTAATAAGGCTTTTGA-AGGCATAGGTGACTATAA
* * * *
8662 ATGGACTTTT-TGTCACCAATGAATAACTTTTTCTT-TTCGTTTCTTGAGGTAAACATTCAATTA
125 ATGGACTTTTCT-T-GCCAATGAATAACTTTTTCTTCATC-TTTCTCGAGGTAGACATTCAATTA
* * * * * *
8725 AAATCTGTTTTAATCAAAACTATAAAAAACA-TCAACTTCAAATCAATTATGAGATTATAAATCT
187 TAATCTGTTTTAATAAAAAATATAAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACC
* * * * * *
8789 ATTTAAAGCGAGTAAAAAGACTTCTGAAGGTATAGGTGGCTATAAATGGACTTTTCTTACCAATA
251 ATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATG
* * * *
8854 AATATCATTTTCTGCACGTTTCTTG
316 AATAGCTTTTTCTTCACGTTTCTCG
* * * * *
8879 AAGTAGACATTCAATTATAATCTGTTTTAA-TAAATAATGTAAAAAAAATTCTACTTTAAAATTA
1 AGGTAGACATTCAATTATAATC-GTTTTAACCAAA-AATG--AAAAAAATTCAAC-TTAAAGTCA
* * * * * * * * **
8943 ATTATGCGAATATAAAAAC-TATTACAGCAAGTAATAAGGCTTTTGAAGGTATGGGCGAGAATAA
61 ATTATGAGATTATAAAACCAT-TTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAA
*** * * ** *
9007 ATGGACTTTTCTCAACAATGAATAGCTTTTTCTTCATGTTTCTTAAGGTAGACATTCAAATATAA
125 ATGGACTTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGAGGTAGACATTCAATTATAA
* ** * * * *
9072 TCTGTTTTGACCAAAAATAAAAAAAAATTC-ACTTAAAGTCAATTATGAGAGTATAAAGCCATTT
190 TCTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
* * * *
9136 AAAGCGAGTAATAAGGCTTTTGAAGGAATAAGAGACTAGAAATGGACTTT
255 AAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTT
Statistics
Matches: 6939, Mismatches: 1581, Indels: 643
0.76 0.17 0.07
Matches are distributed among these distances:
328 19 0.00
329 313 0.05
330 278 0.04
331 165 0.02
332 6 0.00
333 2 0.00
334 3 0.00
335 1 0.00
336 3 0.00
337 3 0.00
338 8 0.00
339 534 0.08
340 901 0.13
341 1484 0.21
342 1333 0.19
343 1053 0.15
344 377 0.05
345 199 0.03
346 68 0.01
347 10 0.00
365 2 0.00
366 2 0.00
371 3 0.00
372 32 0.00
373 15 0.00
374 113 0.02
375 11 0.00
376 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (340 bp):
AGGTAGACATTCAATTATAATCGTTTTAACCAAAAATGAAAAAAATTCAACTTAAAGTCAATTAT
GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGAC
TTTTCTTGCCAATGAATAACTTTTTCTTCATCTTTCTCGAGGTAGACATTCAATTATAATCTGTT
TTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
AGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTACCAATGAATAGCTTTT
TCTTCACGTTTCTCG
Found at i:5168 original size:159 final size:159
Alignment explanation
Indices: 4933--5922 Score: 430
Period size: 170 Copynumber: 5.9 Consensus size: 159
4923 ACTTTTCTTA
** *
4933 CCAATGAATGGCTTTTTCTTCATATTTCTCAAGGTAGACATTTAATTATAATCTATTTTAACCAA
1 CCAATGAATAACTTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATAATCTATTTTAACCAA
* * * **
4998 AAATGTCAAAAAA-TTCAACTT-AAAGTCAAGTATGAGATTATTAGCCCATTTAAAGCGAGTAAT
66 AAATAT-AAAAAACATCAACTTCAAA-TCAAGTATGAGATTATAAAACCATTTAAAGCGAGTAAT
*
5061 AAGGATTTTAAAGGCATAGGTAACTTTGTTG
129 AAGGATTTCAAAGGCATAGGTAACTTTGTTG
* * * *
5092 CCAATGAATAACTTTTTCTTTATGTTTC-CTAAGGTAGACATTCAATTATAATCTGTTTTAA-TA
1 CCAATGAATAACTTTTTCTTCATATTTCTC-AAGGTAGACATTCAATTATAATCTATTTTAACCA
* * *
5155 AAAACTATAAAAAACATCAACTTCAAATCAATTATGAGATTATAAAACTATTTAAAGTGAGTAAT
65 AAAA-TATAAAAAACATCAACTTCAAATCAAGTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * *
5220 AAGGCTTTCGAAGGCATAGGTAACAATAAATGGACTTTTCTTG
129 AAGGATTTCAAAGGCATAGG------T--A---AC-TTTGTTG
* * * * *
5263 CCAATGAATATA-ATTTTCTACACATTTCTCAAAGTAGACATTCAATTATAATCTATTTTAA-TA
1 CCAATGAATA-ACTTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATAATCTATTTTAACCA
** * * * * ** * * *
5326 AACAATATAAAAAA-ATTTTACTTTAAAATCAATTATGAAAATATAAAAATAATTACAGCAAGTA
65 AA-AATATAAAAAACA-TCAAC-TTCAAATCAAGTATGAGATTATAAAACCATTTAAAGCGAGTA
*
5390 ATAAGGCTTTCGAAA-GCATGGACGAGGAGTATAAATGGACTTT-TCTCG
127 ATAAGGATTTC-AAAGGCAT-----A-G-G--T--A---ACTTTGT-T-G
* ** ** * * *
5438 ACAATGAATGGCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAAATATAATCTGTTTTGACCAA
1 CCAATGAATAACTTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATAATCTATTTTAACCAA
* * * * *
5503 AAATGA-AAAAAA-GTTAACTT-AAAGTCAATTATGAGATTATAAAGCCATTTAAAGCGACTAAT
66 AAAT-ATAAAAAACATCAACTTCAAA-TCAAGTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * *
5565 AA-GACTTTTGAAA-GTATAGGTGACTATAAATGGACTTTT
129 AAGGA--TTTCAAAGGCATAGGTAACT-T---T-G---TTG
* * ** * * *
5604 CTTGAGAGTGAATAACTTTTTCTTTACGTTTTTCAAGGTAAACATTCAATTATAATCTGTTTTAA
1 C--CA-A-TGAATAACTTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATAATCTATTTTAA
** * ** * * *
5669 TAAAAAATATAAAAAA-TTTGACTTCAAATCAATTTTGAGATTATAAAACTATTTAAAGCGAGTA
62 CCAAAAATATAAAAAACATCAACTTCAAATCAAGTATGAGATTATAAAACCATTTAAAGCGAGTA
* * * * *
5733 ATAAAGCTTTCGAAGGCATAGGTGACAATGAATGGAGTTTTCTTG
127 ATAAGGATTTCAAAGGCATA-G-G----T--A---A-CTTTGTTG
* * ** * * * * **
5778 CCGAAT-AATATCTTTTTCTACACGTTTCTTAAGGTAAACTTTCAATTATAATATATTTTAATAA
1 CC-AATGAATAACTTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATAATCTATTTTAACCA
* * * ** * *
5842 AAAATATAAAACAA-TTTAACTTAAAATCAAGTATGAGATTATAAAAATAATTAAAGCAAGTAAT
65 AAAATATAAAA-AACATCAACTTCAAATCAAGTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* *
5906 AAGGCTTTCGAAGGCAT
129 AAGGATTTCAAAGGCAT
5923 CGGTGAGTAT
Statistics
Matches: 656, Mismatches: 107, Indels: 124
0.74 0.12 0.14
Matches are distributed among these distances:
158 12 0.02
159 114 0.17
160 4 0.01
163 1 0.00
164 1 0.00
165 1 0.00
166 1 0.00
167 3 0.00
168 3 0.00
169 7 0.01
170 172 0.26
171 139 0.21
172 59 0.09
173 43 0.07
174 14 0.02
175 70 0.11
176 5 0.01
177 1 0.00
178 2 0.00
179 1 0.00
181 2 0.00
182 1 0.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (159 bp):
CCAATGAATAACTTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATAATCTATTTTAACCAA
AAATATAAAAAACATCAACTTCAAATCAAGTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
GGATTTCAAAGGCATAGGTAACTTTGTTG
Done.