Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401458.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4585.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2198
ACGTcount: A:0.22, C:0.09, G:0.07, T:0.24

Warning! 847 characters in sequence are not A, C, G, or T


Found at i:315 original size:172 final size:170

Alignment explanation


    Indices: 22--673  Score: 621
    Period size: 171  Copynumber: 3.8  Consensus size: 170

         12 TTAGTGAAAC

                  *          *                 *             *          *    
         22 AGACTATAATTGAATGTTTATCTC-T-AGAAACATTAA-AAAAAAGACAGTCATTGGCAATAAAA
          1 AGACTAGAATTGAATGTCTA-C-CATGAGAAACATGAAGAAAAAAG-CATTCATTGGCAAGAAAA

               *             *                   *              *     *      
         84 GTCGATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACT-GACTTTAAATTATTTTCTAATCT
         63 GTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATAACTCG-CTTTAAATGATTTTATAATCT

                   *                                      
        148 CAAAATTGATTTAAATTTGATTTCATTGAACATTTTTTGTTAAAAT
        127 CAAAATTAATTTAAATTTGATTT-ATT-AACATTTTTTGTTAAAAT

              *                          *            *     *     *          
        194 AGGCTAGAATTGAATGTCTACCATGAGAATCATGAAGAAAAATGCATTTATTGGGAAGAAAAGTC
          1 AGACTAGAATTGAATGTCTACCATGAGAAACATGAAGAAAAAAGCATTCATTGGCAAGAAAAGTC

                             *           *                        *        **
        259 CATTTATAGTCACCCATACCTTCAAAAGCATTATAACTCGCTTTAAATGATTTTCTAATAC-CGT
         66 CATTTATAGTCACCCATTCCTTCAAAAGCCTTATAACTCGCTTTAAATGATTTTATAAT-CTCAA

                     *  *  * *      *                  *
        323 AATTAATTTTAAGTTAAATTATT-TCTATATTTTTGATT-AAAC
        130 AATTAATTTAAATTTGATTTATTAAC-AT-TTTTTG-TTAAAAT

                  *  *     * *       *                  *              *     
        365 AGACTACAACTGAATATTTACC-TCAAGAAACAT-AGAGAAAAAGGCATTCATTGGCAATAAAAG
          1 AGACTAGAATTGAATGTCTACCAT-GAGAAACATGA-AGAAAAAAGCATTCATTGGCAAGAAAAG

                                     * *        *    *                       
        428 TCCATTTATAGTCACCCATTCCTTCGAGAGCCTTATTACTTAG-TTTAAAT-AGTTTTATAATCT
         64 TCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATAAC-TCGCTTTAAATGA-TTTTATAATCT

                                                  *        
        491 CAAAATTAATTTAAATTTGAATGTT-TTATACATTTTTAGTTAAAAT
        127 CAAAATTAATTTAAATTTG-AT-TTATTA-ACATTTTTTGTTAAAAT

               *                                        *                    
        537 AGAATAGAATTGAATGTCTACCATG-GAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTC
          1 AGACTAGAATTGAATGTCTACCATGAGAAACATGAAGAAAAAAGCATTCATTGGCAAGAAAAGTC

            *                 *                     *       * *              
        601 TATTTATAGTCACCCATTGCTTCAAAAGCCTTATTAA-TCACTTTAAACGGTTTTATAATCTCAA
         66 CATTTATAGTCACCCATTCCTTCAAAAGCCTTA-TAACTCGCTTTAAATGATTTTATAATCTCAA

                *    
        665 AATTGATTT
        130 AATTAATTT

        674 TAAGATCAAA


Statistics
Matches: 386,  Mismatches: 71, Indels: 47
        0.77            0.14        0.09

Matches are distributed among these distances:
 169    1  0.00
 170    8  0.02
 171  218  0.56
 172  145  0.38
 173   13  0.03
 174    1  0.00

ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36


Consensus pattern (170 bp):   
AGACTAGAATTGAATGTCTACCATGAGAAACATGAAGAAAAAAGCATTCATTGGCAAGAAAAGTC
CATTTATAGTCACCCATTCCTTCAAAAGCCTTATAACTCGCTTTAAATGATTTTATAATCTCAAA
ATTAATTTAAATTTGATTTATTAACATTTTTTGTTAAAAT

Done.