Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397674.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_885.1, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1552
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.30

Warning! 208 characters in sequence are not A, C, G, or T


Found at i:809 original size:17 final size:17

Alignment explanation


    Indices: 787--820  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        777 AGAGTTTGTT

                  *          
        787 TATTTGGTTCAAAATAA
          1 TATTTGATTCAAAATAA

                     *       
        804 TATTTGATTTAAAATAA
          1 TATTTGATTCAAAATAA

        821 AAATATAAAA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44


Consensus pattern (17 bp):   
TATTTGATTCAAAATAA
Done.