Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397675.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4624.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1513
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:210 original size:15 final size:16

Alignment explanation


    Indices: 184--213  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        174 TTTTTAATTT

                            
        184 TTAAAAATTAAAATCA
          1 TTAAAAATTAAAATCA

                           
        200 TTAAAAA-TAAAATC
          1 TTAAAAATTAAAATC

        214 CACATAACAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30


Consensus pattern (16 bp):   
TTAAAAATTAAAATCA
Done.