Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401506.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4633.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.14, C:0.17, G:0.07, T:0.26

Warning! 369 characters in sequence are not A, C, G, or T


Found at i:99 original size:19 final size:18

Alignment explanation


    Indices: 60--105  Score: 56
    Period size: 19  Copynumber: 2.5  Consensus size: 18

         50 CAACTTGAGC

                          *   
         60 CTTTTTCTTCCTTTCTCT
          1 CTTTTTCTTCCTTTATCT

                             * 
         78 CTTTTTCTTCTCTTTATTT
          1 CTTTTTCTTC-CTTTATCT

                *    
         97 CTTTCTCTT
          1 CTTTTTCTT

        106 AGGTGAATTC


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  18   10  0.42
  19   14  0.58

ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70


Consensus pattern (18 bp):   
CTTTTTCTTCCTTTATCT
Done.