Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401526.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4652.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1205
ACGTcount: A:0.22, C:0.07, G:0.08, T:0.21

Warning! 520 characters in sequence are not A, C, G, or T


Found at i:1089 original size:171 final size:171

Alignment explanation


    Indices: 796--1197  Score: 522
    Period size: 171  Copynumber: 2.4  Consensus size: 171

        786 NNNNNNNNNN

                                                      *           *   *      
        796 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACACTTTAAAGCGAGCAATTAGCTTT
          1 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGCTTT

                    *                            *          * *              
        861 TTGAAGGAGTGGGTGACTATAAATGGACTTTTCTTCGCAATGAATGCTTGTTTCTTCACAGTT-A
         66 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCGAAATGAATGCTAGCTTCTTCACAGTTCA

                                      *               *
        925 TTAAGGTAAAAATTCAATTATAGTATGTTTTAA-CAAAAAATT
        131 -TAAGGTAAAAATTCAATTATAGTATATTTTAATC-AAAAATG

                      *  *                             *     *           *   
        967 TAAAAAAATTGAATTTAAAATCAATTATGAGATTATAAAATC-GTTTAACGCGAGTAATAATCTT
          1 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA-CAATTTAAAGCGAGTAATAAGCTT

                               *                **                      **   
       1031 TTTGAAGGAATGGGTGACTCTAAATGGACTTTTCTTTTAAATGAATGCTAGCTTCTTCACCTTTC
         65 TTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCGAAATGAATGCTAGCTTCTTCACAGTTC

              *     * *                               
       1096 ATGAGGTAGACATTCAATTATAGTATATTTTAATCAAAAATG
        130 ATAAGGTAAAAATTCAATTATAGTATATTTTAATCAAAAATG

            *            *               *           *                  
       1138 CAAAAAAATTCAAGTTAAAATCAATTATGGGATTATAAAACTATTTAAAGCGAGTAATAA
          1 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAA

       1198 ACCTTTTG


Statistics
Matches: 200,  Mismatches: 27, Indels: 8
        0.85            0.11        0.03

Matches are distributed among these distances:
 170    1  0.00
 171  196  0.98
 172    3  0.01

ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35


Consensus pattern (171 bp):   
TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGCTTT
TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCGAAATGAATGCTAGCTTCTTCACAGTTCA
TAAGGTAAAAATTCAATTATAGTATATTTTAATCAAAAATG
Done.