Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397682.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5348.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1148
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29


Found at i:508 original size:2 final size:2

Alignment explanation


    Indices: 501--530  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

        491 GCCAGCTTTT

                                                          
        501 GA GA GA GA GA GA GA GA GA GA GA -A GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G

        531 TGATCAGTTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   26  0.96

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
GA

Done.