genome.fa.s4292.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401545.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_467.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21298

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
816--1123	168	1.9	158	86	5	363	37	9	8	41	1.68
179--2160	171	11.6	169	74	5	1097	34	13	10	37	1.79
1106--2060	510	1.9	500	80	3	1028	34	14	10	38	1.81
182--2160	341	5.8	340	75	5	1400	34	13	10	37	1.79
2981--3019	21	1.9	21	89	5	62	51	10	10	28	1.68
3421--3733	170	1.8	168	81	6	380	35	13	12	38	1.82
3865--4641	171	4.6	169	73	5	562	35	13	11	35	1.81
4866--6775	171	11.2	167	72	6	833	35	12	11	37	1.80
4748--6775	342	6.0	341	72	5	1156	35	13	11	36	1.81
5813--6769	513	1.9	503	81	3	1104	35	13	12	36	1.83
7900--8897	340	3.0	331	75	7	647	34	13	11	36	1.81
8717--8757	20	2.0	20	85	4	55	31	12	7	48	1.68
8743--9069	171	2.0	153	67	22	232	34	12	11	36	1.78
8396--9496	341	3.2	329	74	11	701	35	12	9	37	1.77
9164--9202	20	1.9	21	84	5	53	53	7	7	30	1.57
9074--9400	169	2.0	158	79	11	347	37	11	8	39	1.74
7903--9941	170	12.0	170	73	8	525	34	13	11	37	1.80
10439--10744	169	1.9	158	83	9	318	37	9	13	35	1.78
10688--10726	20	1.9	21	84	5	53	28	7	12	51	1.67
10591--11057	170	2.7	170	78	7	457	39	9	14	36	1.79
10204--12092	171	11.1	170	72	5	1049	36	11	13	34	1.81
11488--12092	172	3.5	172	76	1	455	36	11	13	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13248--14654	172	8.3	171	76	7	1126	35	13	12	36	1.83
13865--14189	167	2.0	158	85	5	359	34	13	12	36	1.83
13248--14654	332	4.2	331	75	9	1055	35	13	12	36	1.83
14252--14558	162	1.9	162	81	5	370	36	13	12	37	1.82
14756--15635	170	5.2	170	72	9	467	35	12	11	38	1.80
15272--15634	172	2.1	169	83	5	444	35	13	10	40	1.79
15713--16675	171	5.7	170	75	4	656	34	12	11	36	1.80
15713--16685	170	5.7	168	75	5	747	34	13	11	36	1.81
17372--17730	172	2.1	171	82	4	436	33	12	11	41	1.80
18031--20160	170	12.5	169	71	5	737	34	12	10	36	1.78
20141--20182	22	1.9	22	90	0	66	42	9	4	42	1.58
20165--21298	172	6.6	170	73	5	626	34	13	10	37	1.80
20165--21292	171	6.6	171	72	6	501	34	13	10	37	1.80

Tables:   1

The End!