genome.fa.s43.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397296.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_84.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  311483

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4037--4102	30	2.2	30	94	0	114	45	15	6	33	1.70
8043--8097	27	2.0	28	85	3	76	30	25	16	27	1.96
16474--16508	17	1.9	18	88	11	54	77	2	20	0	0.90
38041--38082	19	2.2	19	86	0	57	38	11	11	38	1.79
38766--38813	19	2.6	19	86	3	62	56	0	4	39	1.19
52969--53001	16	2.1	16	100	0	66	36	24	18	21	1.95
62384--62457	37	2.0	37	84	12	98	36	4	5	54	1.43
62400--62459	18	3.3	18	73	17	61	31	5	1	61	1.27
62384--62471	37	2.3	37	79	14	92	39	3	5	51	1.43
65105--65264	35	4.6	35	87	0	221	31	28	13	26	1.94
69849--69886	20	2.0	20	89	5	60	50	13	2	34	1.55
77632--77937	68	4.5	68	90	0	461	35	17	9	37	1.82
92278--92324	19	2.6	19	93	6	80	55	0	4	40	1.19
110411--110455	24	1.9	23	82	13	56	62	11	0	26	1.29
116431--116540	28	3.9	28	75	2	98	23	19	9	48	1.77
116821--116886	28	2.4	28	86	0	87	21	21	9	48	1.77
129125--129172	18	2.6	19	86	3	62	58	0	2	39	1.10
129360--129504	77	1.9	77	95	0	263	45	4	17	31	1.70
133319--133351	16	2.1	16	88	11	50	48	6	6	39	1.53
145939--145981	21	2.0	22	90	9	70	32	9	18	39	1.83
145875--146004	61	2.1	59	78	9	136	31	10	16	42	1.81
146739--146803	32	2.0	32	100	0	130	52	15	9	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149857--149934	35	2.2	35	88	2	111	34	6	12	46	1.68
152842--152881	16	2.3	18	87	12	66	62	10	2	25	1.39
158041--158374	31	10.8	31	72	2	188	28	17	29	24	1.97
158143--158329	93	2.0	93	83	2	234	29	17	28	24	1.97
158199--158371	93	1.9	93	82	2	222	28	18	27	24	1.98
158031--158522	215	2.3	215	86	1	646	27	16	28	24	1.96
158555--158629	29	2.5	30	86	4	98	25	18	34	21	1.96
160423--160648	31	7.3	31	86	0	281	27	14	20	37	1.91
166984--167158	73	2.4	73	83	1	226	14	25	14	45	1.83
177547--177600	18	2.9	18	91	2	90	51	0	3	44	1.19
193840--193868	15	1.9	15	100	0	58	17	20	13	48	1.81
219455--219591	68	2.0	68	91	0	220	31	21	18	27	1.97
223141--223192	21	2.5	21	90	6	79	57	7	7	26	1.54
227039--227086	14	3.4	14	77	11	53	2	35	0	62	1.07
227037--227096	28	2.2	27	93	3	102	1	33	0	65	1.03
230385--230422	20	2.0	20	85	10	53	26	7	7	57	1.54
245971--246013	22	2.0	22	81	9	52	72	9	9	9	1.30
256527--256702	47	3.8	46	79	3	174	27	16	28	26	1.97
256539--256765	92	2.4	94	80	4	255	26	16	27	29	1.97
256732--256791	23	2.6	23	100	0	120	25	15	28	31	1.95
260299--260453	23	6.8	22	82	4	166	23	30	28	17	1.97
260299--260448	69	2.2	69	86	0	201	24	30	28	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264226--264457	31	7.5	31	81	2	234	35	17	17	29	1.93
264226--264457	62	3.7	62	82	3	279	35	17	17	29	1.93
270894--271058	23	7.3	22	77	9	145	33	13	18	33	1.91
278017--278057	21	2.0	21	90	0	64	63	4	21	9	1.44
278290--278336	18	2.4	20	89	10	71	63	2	31	2	1.18
290976--291209	115	2.0	115	87	5	337	50	4	8	36	1.55
304465--304502	13	2.9	13	96	0	67	63	0	21	15	1.31

Tables:   1

The End!