Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401554.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4678.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.23, C:0.07, G:0.08, T:0.20

Warning! 456 characters in sequence are not A, C, G, or T


Found at i:309 original size:170 final size:170

Alignment explanation


    Indices: 9--397  Score: 441
    Period size: 170  Copynumber: 2.3  Consensus size: 170

          1 CTAGAGAC

                                                              *     *        
          9 AAACATTCAATTATAATCTA-TTTTACTAAAAATATAAAAAAATTTCAA-TTAAAATCAATTATG
          1 AAACATTCAATTATAATCTAGTTTTA-TAAAAATATAAAAAAA-TTCAACATAAAACCAATTATG

                        *             *     *       *            *           
         72 AGGTTATAAAATCATTAAAAGCGAGTGATGAGCCTTTTGACGACATGAGAGACTATAAATAGACT
         64 AGGTTATAAAATAATTAAAAGCGAGTAATGAGACTTTTGAAGACATGAGAGACAATAAATAGACT

                                          *       *  *  
        137 TTTCTTGCTC-ATAGATATCTGTTTCATC-TGATTTCATGAGGT
        129 TTTCTTGC-CAATAGATATCTGTTTCATCACG-TTTCACGAAGT

             **                                                              
        179 AGGCATTCAATTATAATCTAGTTTTATAAAAAT-TATAAAAAATTCAACATAAAACCAATTATGA
          1 AAACATTCAATTATAATCTAGTTTTATAAAAATATA-AAAAAATTCAACATAAAACCAATTATGA

                   *       *                          *    * *          *    
        243 GGTTATACAATAATTTAAAGCGAGTAAT-AGGACTTTTGAAGGCATGGGTGACAATAAATGGACT
         65 GGTTATAAAATAATTAAAAGCGAGTAATGA-GACTTTTGAAGACATGAGAGACAATAAATAGACT

               *  *     *       *              *      
        307 TTTTTTTCCAATGGATATCTTTTTCATCACGTTTCCCGAAGT
        129 TTTCTTGCCAATAGATATCTGTTTCATCACGTTTCACGAAGT

                   *                                          
        349 AAACATTTAATTATAATCT-GTTTTAATAAAAAATATAAAAAAATTCAAC
          1 AAACATTCAATTATAATCTAGTTTT-AT-AAAAATATAAAAAAATTCAAC

        398 TTANNNNNNN


Statistics
Matches: 184,  Mismatches: 26, Indels: 17
        0.81            0.11        0.07

Matches are distributed among these distances:
 169   14  0.08
 170  144  0.78
 171   24  0.13
 172    2  0.01

ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35


Consensus pattern (170 bp):   
AAACATTCAATTATAATCTAGTTTTATAAAAATATAAAAAAATTCAACATAAAACCAATTATGAG
GTTATAAAATAATTAAAAGCGAGTAATGAGACTTTTGAAGACATGAGAGACAATAAATAGACTTT
TCTTGCCAATAGATATCTGTTTCATCACGTTTCACGAAGT
Done.