Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401557.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4680.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 949

Length: 1583
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.23

Warning! 638 characters in sequence are not A, C, G, or T


Found at i:757 original size:171 final size:171

Alignment explanation


    Indices: 427--831  Score: 534
    Period size: 171  Copynumber: 2.4  Consensus size: 171

        417 NNNCCATTCT

                                        *              *   *              *  
        427 TTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCAGAATCAATTTTAAGTT-AAATT
          1 TTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTAATTTTAAGTTGAATTT

                                *         *   *         *                    
        491 TTTTATAGTTTTTACTAAAATAAACTATAATTCATTGCTTGCCTTGAGAAACGTATAGAAAAACC
         66 TTTTATAGTTTTTACTAAAAGAAACTATAAATCAATGCTTGCCTAGAGAAACGTATAGAAAAACC

                    *           *             *      
        556 CAGTTATTTGAAAGAAAAGTCTATTTATAGTCTCTCATACC
        131 CAGTTATTAGAAAGAAAAGTATATTTATAGTCTCCCATACC

                                *                           *                
        597 TTCAAAAGCCTTATTACTCGTTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTT
          1 TTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTAATTTTAAGTTGAATTT

                           *      *          *                               
        662 TTTTATA-TTTTTCATTAAAAGCAACTATAAATGAATGCTTGCCCTAGA-AAACGTATAGAAAAA
         66 TTTTATAGTTTTT-ACTAAAAGAAACTATAAATCAATGCTTG-CCTAGAGAAACGTATAGAAAAA

            *                                         * *
        725 GCCA-TTCATTA-AGAAGAAAAGTATATTTATAGTCTCCCATTCT
        129 CCCAGTT-ATTAGA-AAGAAAAGTATATTTATAGTCTCCCATACC

                    * *                                                      
        768 TTCAAAAGTCATATTACTCGCTTTAAA-AGGTTTTATAATCTCATAATTAATTTTAAGTTGAATT
          1 TTCAAAAGCCTTATTACTCGCTTTAAATA-GTTTTATAATCTCATAATTAATTTTAAGTTGAATT

        832 GNNNNNNNNN


Statistics
Matches: 206,  Mismatches: 23, Indels: 11
        0.86            0.10        0.05

Matches are distributed among these distances:
 170   63  0.31
 171  138  0.67
 172    5  0.02

ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40


Consensus pattern (171 bp):   
TTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTAATTTTAAGTTGAATTT
TTTTATAGTTTTTACTAAAAGAAACTATAAATCAATGCTTGCCTAGAGAAACGTATAGAAAAACC
CAGTTATTAGAAAGAAAAGTATATTTATAGTCTCCCATACC
Done.