Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401563.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4688.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2146
ACGTcount: A:0.24, C:0.10, G:0.09, T:0.26

Warning! 668 characters in sequence are not A, C, G, or T


Found at i:2017 original size:172 final size:161

Alignment explanation


    Indices: 1708--2029  Score: 317
    Period size: 172  Copynumber: 1.9  Consensus size: 161

       1698 NNNNNNNNNN

                            * *                             *        *       
       1708 ACATTTTTTATTAAAATATACTATAATTGAATGTCTACCACAAGAAATGTGTAGAAACAAGTATT
          1 ACATTTTTTATTAAAAAAGACTATAATTGAATGTCTACCACAAGAAATATGTAGAAAAAAGTATT

                  *   *      *                  *                         *  
       1773 CATTGATAAGGAAAGTCTATTTAGAGTCACCCACTCTTTCAAAAAGCTTATTACTCGCTTTACAT
         66 CATTGAGAAGAAAAGTCCATTTAGAGTCACCCACTCCTTCAAAAAGCTTATTACTCGCTTTAAAT

                                                     
       1838 AGTTTTATAATCTCATAATTNNNNNNNNNNTGAATTTTTTT
        131 AGTTTTATAATCTCATAATT----------TGAATTTTTTT

                     *                           *  * *                      
       1879 ACATTTTTTGTTAAAAAAAGACTATAATTGAATGTCTGCCTCGAGAAATATGTA-AAAAAAGTCA
          1 ACATTTTTTATT-AAAAAAGACTATAATTGAATGTCTACCACAAGAAATATGTAGAAAAAAGT-A

                   *                 *    * *  *                             
       1943 TTCATTGGGAAGAAAAGTCCATTTATAGTCTCTCATTCCTT-AAAAAGCCTTATTA-TCTGCTTT
         64 TTCATTGAGAAGAAAAGTCCATTTAGAGTCACCCACTCCTTCAAAAAG-CTTATTACTC-GCTTT

                *          *        
       2006 AAATTGTTTTATAATTTCATAATT
        127 AAATAGTTTTATAATCTCATAATT

       2030 NNNNNNNNNN


Statistics
Matches: 127,  Mismatches: 20, Indels: 7
        0.82            0.13        0.05

Matches are distributed among these distances:
 171   26  0.20
 172  101  0.80

ACGTcount: A:0.35, C:0.13, G:0.11, T:0.38


Consensus pattern (161 bp):   
ACATTTTTTATTAAAAAAGACTATAATTGAATGTCTACCACAAGAAATATGTAGAAAAAAGTATT
CATTGAGAAGAAAAGTCCATTTAGAGTCACCCACTCCTTCAAAAAGCTTATTACTCGCTTTAAAT
AGTTTTATAATCTCATAATTTGAATTTTTTT
Done.